mRNA_H-elongata_contig13354.2383.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13354.2383.1
Unique NamemRNA_H-elongata_contig13354.2383.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13354.2383.1 vs. uniprot
Match: D7G2X8_ECTSI (Nicotianamide aminotransferase A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X8_ECTSI)

HSP 1 Score: 356 bits (913), Expect = 1.220e-120
Identity = 161/216 (74.54%), Postives = 192/216 (88.89%), Query Frame = 1
Query:    1 TSGNPTGAVCPQRMMEKIARLCSEHGTWLVVDEAYEHFLYDSQRHYSPCGNRLGCPDNIVHLFTMSKSFGLAGWRVGYAVYPAWASEDMVKVQDTLPTHACTASQWVALAALEVGGCDWVRSRVASLTRCREAMWSAVRDAGGVKGEGAFYFLIPVQMDEDRAIDMLARRFGVLVTPGRAFGAPGHIRVSYGSLPEEECLAATERLHDGLQALSKE 648
            T GNP+GAVCP+  +E+IARLC E+  WLVVDEAYEHFL+D +RH+SPCGN LGCPDN++HLFTMSKSFGLAGWRVGYAVYP+WAS++MVKVQDTLPTHACT SQ +ALAALE GG DWV+S+V+SL+RCR AMW+AV+D GGV G+G+FYFL+PV ++EDRA+D+LARR+GVL TPGRAFGAPGHIRVSYGSLPEE+CL A   L +GL+ LS E
Sbjct:  144 TPGNPSGAVCPRETLEEIARLCGENNAWLVVDEAYEHFLHDGERHFSPCGNSLGCPDNVIHLFTMSKSFGLAGWRVGYAVYPSWASKEMVKVQDTLPTHACTGSQKIALAALE-GGVDWVKSKVSSLSRCRSAMWAAVKDMGGVMGKGSFYFLVPVPVEEDRAVDVLARRWGVLTTPGRAFGAPGHIRVSYGSLPEEQCLPAIRSLAEGLRELSNE 358          
BLAST of mRNA_H-elongata_contig13354.2383.1 vs. uniprot
Match: A0A6H5KAS1_9PHAE (VAS1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS1_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 3.740e-107
Identity = 161/297 (54.21%), Postives = 191/297 (64.31%), Query Frame = 1
Query:    1 TSGNPTGAVCPQRMMEKIARLCSEHGTWLVVDEAYEHFLYDSQR---------------------------------------------------------------------------------HYSPCGNRLGCPDNIVHLFTMSKSFGLAGWRVGYAVYPAWASEDMVKVQDTLPTHACTASQWVALAALEVGGCDWVRSRVASLTRCREAMWSAVRDAGGVKGEGAFYFLIPVQMDEDRAIDMLARRFGVLVTPGRAFGAPGHIRVSYGSLPEEECLAATERLHDGLQALSKE 648
            T GNP+GAVCP+  ME+I RLC E+  WLVVDEAYEHFL+D +R                                                                                 H+SPCGN LGCPDN++HLFTMSKSFGLAGWRVGYAVYP+WAS++MVKVQDTLPTHACT SQ +ALAALE GG DWV+S+V+SL+RCR AMW+AV+D GGV G+G+FYFL+PV ++EDRA+D+LARR+GVL TPGRAFGAPGHIRVSYGSLPEE+CL A   L +GL+ LS E
Sbjct:   19 TPGNPSGAVCPRETMEEITRLCGENNAWLVVDEAYEHFLHDGERWGTGPAGKVSAAIPRPKLHPLVFRRPHPLPDVGLVLLGLEPSPTPPIILPPSLNPYVGTPTVLPHYESPHPRLFDPFFFSRHFSPCGNSLGCPDNVIHLFTMSKSFGLAGWRVGYAVYPSWASKEMVKVQDTLPTHACTGSQKIALAALE-GGVDWVKSKVSSLSRCRSAMWAAVKDMGGVMGKGSFYFLVPVPVEEDRAVDVLARRWGVLTTPGRAFGAPGHIRVSYGSLPEEQCLPAIRSLAEGLRELSNE 314          
BLAST of mRNA_H-elongata_contig13354.2383.1 vs. uniprot
Match: A0A835YRY9_9STRA (Nicotianamide aminotransferase A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRY9_9STRA)

HSP 1 Score: 256 bits (655), Expect = 4.170e-81
Identity = 130/223 (58.30%), Postives = 161/223 (72.20%), Query Frame = 1
Query:    1 TSGNPTGAVCPQRMMEKIARLCSEHGTWLVVDEAYEHFLYDSQRHYSPCGNRLGCPDNIVHLFTMSKSFGLAGWRVGYAVYPAWASEDMVKVQDTLPTHACTASQWVALAALEVGGCD-----WVRSRVASLTRCREAMWSAVRDAGGVKGEGAFYFLIPVQ---MDEDRAIDMLARRFGVLVTPGRAFGAPGHIRVSYGSLPEEECLAATERLHDGLQALSK 645
            T GNP+GAV  + M+E+IA+LC EHGTWLV+DEAY  F++D  +HYSPC N LG  D+I+H+++ SKS+GLAGWRVGY VYP   SE + KVQDT+PTHA  ASQ +ALAA            WV+ +VA+L  CREAMWS V   G V+  GAFYF +P+      ED AI++LA + GVLVTPG AFGAPGHIRVSYGSLPE ECL A  RL  GL++L++
Sbjct:  173 TPGNPSGAVYSRAMIEEIAQLCREHGTWLVIDEAYCDFVHDGAQHYSPCANALGF-DSIIHIYSFSKSYGLAGWRVGYMVYPQRISEHIQKVQDTVPTHAAVASQRLALAAXXXXXXXXXXXAWVKQQVAALHTCREAMWSQVSPYGTVRTNGAFYFFVPLPGGPASEDAAIELLAMQCGVLVTPGSAFGAPGHIRVSYGSLPEPECLEAIARLGRGLRSLAQ 394          
BLAST of mRNA_H-elongata_contig13354.2383.1 vs. uniprot
Match: A0A4D9CSE6_9STRA (Aminotran_1_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSE6_9STRA)

HSP 1 Score: 225 bits (574), Expect = 3.120e-69
Identity = 115/226 (50.88%), Postives = 150/226 (66.37%), Query Frame = 1
Query:    1 TSGNPTGAVCPQRMMEKIARLCSEHGTWLVVDEAYEHFLYDSQRHYSPCGNRLGCPDNIVHLFTMSKSFGLAGWRVGYAVYPAWASEDMVKVQDTLPTHACTASQWVALAALEVGGCDWVRSRVASLTRCREAMWSAVRD--AGGVKGEGAFYFL--IPVQMDEDRAIDMLARRFGVLVTPGRAFGAPGHIRVSYGSLPEEECLAATERLHDGLQALSKEVKIKAS 666
            T GNPTGAVCP+ +++++A LC + G WLVVDE+YEHFL++  RH S C + L     +VH+++ SKS+G+AGWR+GY VYP      +  +QDT+PTHA   SQ V LAAL  G  +WV+ +VA LT CRE +W+ +     G V+ EGAFYFL  +P  + E  A+  LA  + VL TPG AFGAPG +R+SYGSLP  EC+ A  RL  GL AL KE   K S
Sbjct:  145 TPGNPTGAVCPESLLKEVAALCRKAGAWLVVDESYEHFLHEGARHVSLCASALDF-SGLVHVYSFSKSYGMAGWRLGYLVYPRGLKTALRSLQDTIPTHAAMVSQAVGLAALGAGR-EWVQRQVAGLTDCRERLWAVLSKHCPGSVRTEGAFYFLAQLPPHVSEAEAVHRLATEYRVLCTPGEAFGAPGTLRLSYGSLPPAECIDALGRLDAGLAALIKEGTDKVS 368          
BLAST of mRNA_H-elongata_contig13354.2383.1 vs. uniprot
Match: A0A7S2ZSN6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZSN6_9RHOD)

HSP 1 Score: 189 bits (479), Expect = 1.160e-56
Identity = 99/215 (46.05%), Postives = 132/215 (61.40%), Query Frame = 1
Query:    7 GNPTGAVCPQRMMEKIARLCSEHGTWLVVDEAYEHFLYDSQRHYSPCGNRLGCPDNIVHLFTMSKSFGLAGWRVGYAVYPAWASEDMVKVQDTLPTHACTASQWVALAALEVGGCDWVRSRVASLTRCREAMWSAVRDAGGVKGEGAFYFLI--PVQMDEDRAIDMLARRFGVLVTPGRAFGAPGHIRVSYGSLPEEECLAATERLHDGLQALSK 645
            GNP+G+V  + ++E++  LC + G WL+ DEAYEHFLY+S  HYSP       P+ ++++FTMSKS+ LAGWRVGY  YP   S+ M+K+ DT+PTHAC  SQ +A  ALE  G D+       L R R+ +W  V     VK  GAFYF I  P   D+  A  +LA ++ VLV PG AFG PG++R+SY  L  E    A   L +GL  LS+
Sbjct:   16 GNPSGSVAERELVEELETLCHDAGIWLISDEAYEHFLYNSVAHYSPSLY----PNQVINIFTMSKSYALAGWRVGYISYPKILSDSMLKINDTVPTHACRTSQSIATKALEDDG-DFPAVHAKELERNRDEIWRVVEKYATVKTTGAFYFFIKAPGGYDDLDATRILAEKYNVLVVPGVAFGMPGYLRISYAGLRYEVMKTAAACLEEGLLYLSR 225          
BLAST of mRNA_H-elongata_contig13354.2383.1 vs. uniprot
Match: L8GQ78_ACACA (Aspartate aminotransferase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQ78_ACACA)

HSP 1 Score: 191 bits (486), Expect = 6.470e-56
Identity = 102/218 (46.79%), Postives = 130/218 (59.63%), Query Frame = 1
Query:   10 NPTGAVCPQRMMEKIARLCSEHGTWLVVDEAYEHFLYDSQRHYSPCGNRLGCPDNIVHLFTMSKSFGLAGWRVGYAVYPAWASEDMVKVQDTLPTHACTASQWVALAALEVGGCDWVRSRVASLTRCREAMWSAV--------RDAGGVKGEGAFYFL--IPVQMDEDRAIDMLARRFGVLVTPGRAFGAPGHIRVSYGSLPEEECLAATERLHDGLQ 633
            NPTGA+ P   ++KI +LC + G WLV DEAYE F++D   H SP G       N++++FT SKS+GLAGWRVGY ++P    E M KVQDT+P +AC  SQ +AL AL   G  WV   VA+L R RE  W AV        R      G G+ Y    +P  +D+  AI  L+ +  V V PG+ FGAPGH+RVS+G+LP E C  A  RL  GLQ
Sbjct:  167 NPTGAITPPETIQKIQQLCLDKGLWLVADEAYEDFVFDGATHRSPTG------PNVINIFTFSKSYGLAGWRVGYVLFPPELKEGMDKVQDTVPINACQISQRLALHALTNAGPQWVAQMVATLQRNRELAWDAVEPLRTHHERQGRTAPGVGSLYVFAKLPEGVDDMAAIKYLSHQHKVCVLPGKGFGAPGHLRVSFGNLPPELCEQAALRLKQGLQ 378          
BLAST of mRNA_H-elongata_contig13354.2383.1 vs. uniprot
Match: A0A7S2ZU54_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZU54_9RHOD)

HSP 1 Score: 189 bits (479), Expect = 1.550e-54
Identity = 99/215 (46.05%), Postives = 132/215 (61.40%), Query Frame = 1
Query:    7 GNPTGAVCPQRMMEKIARLCSEHGTWLVVDEAYEHFLYDSQRHYSPCGNRLGCPDNIVHLFTMSKSFGLAGWRVGYAVYPAWASEDMVKVQDTLPTHACTASQWVALAALEVGGCDWVRSRVASLTRCREAMWSAVRDAGGVKGEGAFYFLI--PVQMDEDRAIDMLARRFGVLVTPGRAFGAPGHIRVSYGSLPEEECLAATERLHDGLQALSK 645
            GNP+G+V  + ++E++  LC + G WL+ DEAYEHFLY+S  HYSP       P+ ++++FTMSKS+ LAGWRVGY  YP   S+ M+K+ DT+PTHAC  SQ +A  ALE  G D+       L R R+ +W  V     VK  GAFYF I  P   D+  A  +LA ++ VLV PG AFG PG++R+SY  L  E    A   L +GL  LS+
Sbjct:  197 GNPSGSVAERELVEELETLCHDAGIWLISDEAYEHFLYNSVAHYSPSLY----PNQVINIFTMSKSYALAGWRVGYISYPKILSDSMLKINDTVPTHACRTSQSIATKALEDDG-DFPAVHAKELERNRDEIWRVVEKYATVKTTGAFYFFIKAPGGYDDLDATRILAEKYNVLVVPGVAFGMPGYLRISYAGLRYEVMKTAAACLEEGLLYLSR 406          
BLAST of mRNA_H-elongata_contig13354.2383.1 vs. uniprot
Match: A0A8J6CHH3_DIALT (Aminotran_1_2 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CHH3_DIALT)

HSP 1 Score: 179 bits (454), Expect = 7.440e-51
Identity = 98/230 (42.61%), Postives = 133/230 (57.83%), Query Frame = 1
Query:    7 GNPTGAVCPQRMMEKIARLCSEHGTWLVVDEAYEHFLYDSQRHYSPCGNRLGCPDNIVHLFTMSKSFGLAGWRVGYAVYPAWASEDMVKVQDTLPTHACTASQWVALAALE-------VGGCDWVRSRVASLTRCREAMWSAVR-------DAGGVKGEGAFYFLI--PVQMDEDRAIDMLARRFGVLVTPGRAFGAPGHIRVSYGSLP--EEECLAATERLHDGLQALS 642
            GNP+GAV P+R++  +      HG W++ DEAYEHF++D   H+SP   R     +++ LFTMSKS+G+AGWRVGY  YP    E M+K+QD+LPTHA T +Q +A AAL          G  WVR RVA+L   R A+W  V        DA  V+GEGA Y  +  P  + ++ A+  LA  F VLV PG   G  GH+R+S+ S+    +E   A   L  GL A++
Sbjct:  180 GNPSGAVIPERLLRALVLEAIAHGLWVISDEAYEHFVFDGAAHFSPAAER-AFSAHVLSLFTMSKSYGMAGWRVGYVSYPERLDEVMLKIQDSLPTHATTLAQVIAAAALSDXXDSGASAGVAWVRERVATLRGVRRAVWDIVAETLEVGGDAKSVRGEGALYAFVRLPDGVCDEDAVARLADEFSVLVLPGSCAGMGGHVRISFASVEPGSDEAAGALAALRAGLGAIA 408          
BLAST of mRNA_H-elongata_contig13354.2383.1 vs. uniprot
Match: A0A067KM24_JATCU (Aminotran_1_2 domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067KM24_JATCU)

HSP 1 Score: 174 bits (441), Expect = 4.010e-49
Identity = 94/220 (42.73%), Postives = 135/220 (61.36%), Query Frame = 1
Query:    7 GNPTGAVCPQRMMEKIARLCSEHGTWLVVDEAYEHFLYDSQRHYSPCGNRLGCPDNIVHLFTMSKSFGLAGWRVGYAVYPAWAS---EDMVKVQDTLPTHACTASQWVALAALEVGGCDWVRSRVASLTRCREAMWSAVRDAG--GVKG-EGAFYF---LIPVQMDEDRAIDMLARRFGVLVTPGRAFGAPGHIRVSYGSLPEEECLAATERLHDGLQAL 639
            GNP+G   P+ ++++I+ LC E G+WL+VD  YE+F+YD  +H    G      D++V++F+ SK++G+ GWRVGY  YP+        ++KVQD +P  A   SQ++AL +LEVG  +WV  RV  L + RE +  A+   G   VKG EGA Y    L    +D+ + +  LA R GV+V PG A G PGH+R+S+G L E +C AA ERL  GL+ L
Sbjct:  175 GNPSGTYIPEPLLKRISDLCREAGSWLIVDNTYEYFMYDGLKHSCVEG------DHVVNIFSFSKAYGMMGWRVGYIAYPSGVEGVGTQLLKVQDNIPICASLISQYLALYSLEVGP-EWVSERVKDLVKNREILLKALSPLGEGAVKGGEGALYLWAKLPDKYLDDTKVVRWLATRHGVVVIPGDACGCPGHLRISFGGLIEADCKAAAERLKKGLEEL 387          
BLAST of mRNA_H-elongata_contig13354.2383.1 vs. uniprot
Match: A0A7J8MKQ0_9ROSI (Aminotran_1_2 domain-containing protein (Fragment) n=1 Tax=Gossypium lobatum TaxID=34289 RepID=A0A7J8MKQ0_9ROSI)

HSP 1 Score: 172 bits (436), Expect = 4.160e-49
Identity = 93/223 (41.70%), Postives = 138/223 (61.88%), Query Frame = 1
Query:    7 GNPTGAVCPQRMMEKIARLCSEHGTWLVVDEAYEHFLYDSQRHYSPCGNRLGCPDNIVHLFTMSKSFGLAGWRVGYAVYPAWA---SEDMVKVQDTLPTHACTASQWVALAALEVGGCDWVRSRVASLTRCREAMWSAVRDAGG---VKGEGAFYF--LIPVQ-MDEDRAIDMLARRFGVLVTPGRAFGAPGHIRVSYGSLPEEECLAATERLHDGLQALSKE 648
            GNP+G   P+ ++++I+ +C + G WLVVD  YE+F+YD  +H    G      D+IV++F+ SK++G+ GWRVGY  YP      +  ++KVQD +P  A   SQ +AL +LEVG  +WVR +V  L + RE +  A+   G    + GEGA Y    +P + MD+ + +  LA R GV+V PG A G+PGH+R+S+G L E +C AA +RL  GL+ L K+
Sbjct:  108 GNPSGTYIPELLLKRISDICKKAGCWLVVDNTYEYFMYDGLKHSCVEG------DHIVNIFSFSKAYGMMGWRVGYIAYPTEVEGLATQLLKVQDNIPICASIISQRLALHSLEVGP-EWVREQVKDLVKNREIVIEALSPLGEGAVLGGEGAIYLWATLPEKCMDDVKVVHWLAHRHGVVVIPGSACGSPGHLRISFGGLMENDCRAAAQRLKTGLEELVKD 323          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13354.2383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2X8_ECTSI1.220e-12074.54Nicotianamide aminotransferase A n=1 Tax=Ectocarpu... [more]
A0A6H5KAS1_9PHAE3.740e-10754.21VAS1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835YRY9_9STRA4.170e-8158.30Nicotianamide aminotransferase A n=1 Tax=Tribonema... [more]
A0A4D9CSE6_9STRA3.120e-6950.88Aminotran_1_2 domain-containing protein n=1 Tax=Na... [more]
A0A7S2ZSN6_9RHOD1.160e-5646.05Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
L8GQ78_ACACA6.470e-5646.79Aspartate aminotransferase n=1 Tax=Acanthamoeba ca... [more]
A0A7S2ZU54_9RHOD1.550e-5446.05Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A8J6CHH3_DIALT7.440e-5142.61Aminotran_1_2 domain-containing protein n=1 Tax=Di... [more]
A0A067KM24_JATCU4.010e-4942.73Aminotran_1_2 domain-containing protein n=1 Tax=Ja... [more]
A0A7J8MKQ0_9ROSI4.160e-4941.70Aminotran_1_2 domain-containing protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13354contigH-elongata_contig13354:6525..8014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score178.7
Seed ortholog evalue3e-42
Seed eggNOG ortholog57918.XP_004302910.1
GOsGO:0000096,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006521,GO:0006555,GO:0006558,GO:0006568,GO:0006569,GO:0006570,GO:0006576,GO:0006586,GO:0006725,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009641,GO:0009698,GO:0009850,GO:0009851,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010252,GO:0010326,GO:0010364,GO:0010366,GO:0010565,GO:0010600,GO:0010817,GO:0016054,GO:0016740,GO:0016769,GO:0017144,GO:0019222,GO:0019439,GO:0019748,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031335,GO:0031336,GO:0032350,GO:0032351,GO:0032353,GO:0033238,GO:0033239,GO:0034641,GO:0042402,GO:0042430,GO:0042436,GO:0042445,GO:0042446,GO:0042592,GO:0042762,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0045763,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046885,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051175,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090354,GO:0090356,GO:0090357,GO:1900908,GO:1900909,GO:1900911,GO:1900912,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901996,GO:1901997,GO:1902221
EggNOG free text desc.Bifunctional aspartate aminotransferase and glutamate aspartate-prephenate
EggNOG OGs37RZD@33090,3G80E@35493,COG0436@1,KOG0257@2759
COG Functional cat.E
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionnicotianamide aminotransferase A
Ec32 orthologEc-09_004540.1
Exons4
Model size672
Cds size672
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13354.2383.1prot_H-elongata_contig13354.2383.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13354 6525..8014 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929792.7696311-CDS-H-elongata_contig13354:6524..66601622929792.7696311-CDS-H-elongata_contig13354:6524..6660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13354 6525..6660 -
1691679159.6037476-CDS-H-elongata_contig13354:6524..66601691679159.6037476-CDS-H-elongata_contig13354:6524..6660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13354 6525..6660 -
1622929792.7823484-CDS-H-elongata_contig13354:6888..70841622929792.7823484-CDS-H-elongata_contig13354:6888..7084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13354 6889..7084 -
1691679159.6132517-CDS-H-elongata_contig13354:6888..70841691679159.6132517-CDS-H-elongata_contig13354:6888..7084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13354 6889..7084 -
1622929792.877387-CDS-H-elongata_contig13354:7462..76711622929792.877387-CDS-H-elongata_contig13354:7462..7671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13354 7463..7671 -
1691679159.6214354-CDS-H-elongata_contig13354:7462..76711691679159.6214354-CDS-H-elongata_contig13354:7462..7671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13354 7463..7671 -
1622929792.8881977-CDS-H-elongata_contig13354:7883..80141622929792.8881977-CDS-H-elongata_contig13354:7883..8014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13354 7884..8014 -
1691679159.6298168-CDS-H-elongata_contig13354:7883..80141691679159.6298168-CDS-H-elongata_contig13354:7883..8014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13354 7884..8014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13354.2383.1

>prot_H-elongata_contig13354.2383.1 ID=prot_H-elongata_contig13354.2383.1|Name=mRNA_H-elongata_contig13354.2383.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp
TSGNPTGAVCPQRMMEKIARLCSEHGTWLVVDEAYEHFLYDSQRHYSPCG
NRLGCPDNIVHLFTMSKSFGLAGWRVGYAVYPAWASEDMVKVQDTLPTHA
CTASQWVALAALEVGGCDWVRSRVASLTRCREAMWSAVRDAGGVKGEGAF
YFLIPVQMDEDRAIDMLARRFGVLVTPGRAFGAPGHIRVSYGSLPEEECL
AATERLHDGLQALSKEVKIKASS*
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mRNA from alignment at H-elongata_contig13354:6525..8014-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13354.2383.1 ID=mRNA_H-elongata_contig13354.2383.1|Name=mRNA_H-elongata_contig13354.2383.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1490bp|location=Sequence derived from alignment at H-elongata_contig13354:6525..8014- (Himanthalia elongata Himel1 dioecious)
ACCTCAGGGAACCCTACCGGAGCGGTTTGTCCTCAAAGAATGATGGAGAA AATAGCGCGACTTTGCAGCGAGCACGGCACCTGGCTCGTCGTGGACGAGG CGTACGAGCATTTTCTGTACGATAGTCAACGGTGAGAGGGTGCACGAATG AGCCATGACTTGGAAACTCCAGGTGCGCTGAAATAACGTTTGAGCTAGAA ATATAAACTTAAATCCTTCGAGGGTATCGGTATGGTATTGGCGAAATATA GTGATGGCCTTGTTCGTAGGCACGATCGTACCGGGGGGCCACGCGTTTAC GAAAACCTTCCCTATCTTCCGCCAAACGCTCCCGGTTCGGAAGGCATTAC AGTCCCTGTGGAAACCGACTGGGCTGCCCTGACAACATTGTACACCTCTT CACGATGTCGAAGTCATTCGGCCTCGCGGGCTGGCGGGTGGGCTATGCGG TGTACCCCGCCTGGGCAAGCGAGGACATGGTAAAAGTACAGGACACGCTG CCGACACACGCGTGCACCGCCAGCCAATGGGTAGCGCTCGCCGCACTAGA AGGTAGGTTGGCACTCTTTTTCTTCTGCTGCTGATGGACGACGCGGGCGG AAAATGCAAAGCGTGTTTTGTTGATCCACGTCCTAGGCAGCACATTCCCA CTACTCCCTAGAGCGATCTTTCGATGTAAAGAGTATATATATCTACAGTA CCTAGGGCACCCTCCCCCGAAGAGCTCGGTACTCACCCCGGAGAACATTT GTACCCTACTTTATAATGTAATATGAAGTACAAGGCCAATATCTTGGGGA GGGGACCACACAAAAAGTATTCATTATTACCCAGCTTGCACATTAGAGAC TGGAGTGCCGCTGACTACGCGCTTCATTCCTTAGCCACCGCTTATAAAAT ATCCCGGTTGTGTAATACGCATGTGCCAAGTTGGAGGATGTGACTGGGTA CGCTCCAGGGTGGCGTCGCTAACGCGATGCCGGGAGGCCATGTGGTCTGC AGTTCGAGATGCGGGAGGTGTTAAGGGCGAGGGAGCTTTTTACTTCCTGA TCCCTGTGCAGATGGACGAGGATAGAGCAATCGATATGCTCGCTAGGCGT TTCGGGGTACTGGTCACGCCCGGGAGGTAACCTGGTATATTTCTAGACTA ACACTACATCCGCCATCTACAGATGGGCTAGGAAATAATTTAACAATCTC AAACATCAAACATCTTGCCCGTGTAGCAGGAACATAAAACATCTTCACGC CCATTATCGTCAGTGAAGTATTCCCCCTTCCTTCCTCGACTGTTGCTTCG TTGACACTTCGAACCCTTCACTGCTTTCCCGTAAACATGGCGGATCATTT CAAGGGCGTTTGGGGCACCGGGACACATCCGAGTCTCCTATGGGTCTCTC CCGGAAGAGGAATGCCTCGCTGCCACAGAACGCCTTCATGATGGCTTGCA GGCTTTGTCAAAAGAAGTGAAAATAAAAGCGTCATCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig13354:6525..8014-

>mRNA_H-elongata_contig13354.2383.1 ID=mRNA_H-elongata_contig13354.2383.1|Name=mRNA_H-elongata_contig13354.2383.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig13354:6525..8014- (Himanthalia elongata Himel1 dioecious)
ACCTCAGGGAACCCTACCGGAGCGGTTTGTCCTCAAAGAATGATGGAGAA
AATAGCGCGACTTTGCAGCGAGCACGGCACCTGGCTCGTCGTGGACGAGG
CGTACGAGCATTTTCTGTACGATAGTCAACGACCTCAGGGAACCCTACCG
GAGCGGTTTGTCCTCAAAGAATGATGGAGAAAATAGCGCGACTTTGCAGC
GAGCACGGCACCTGGCTCGTCGTGGACGAGGCGTACGAGCATTTTCTGTA
CGATAGTCAACGGCATTACAGTCCCTGTGGAAACCGACTGGGCTGCCCTG
ACAACATTGTACACCTCTTCACGATGTCGAAGTCATTCGGCCTCGCGGGC
TGGCGGGTGGGCTATGCGGTGTACCCCGCCTGGGCAAGCGAGGACATGGT
AAAAGTACAGGACACGCTGCCGACACACGCGTGCACCGCCAGCCAATGGG
TAGCGCTCGCCGCACTAGAAGGCATTACAGTCCCTGTGGAAACCGACTGG
GCTGCCCTGACAACATTGTACACCTCTTCACGATGTCGAAGTCATTCGGC
CTCGCGGGCTGGCGGGTGGGCTATGCGGTGTACCCCGCCTGGGCAAGCGA
GGACATGGTAAAAGTACAGGACACGCTGCCGACACACGCGTGCACCGCCA
GCCAATGGGTAGCGCTCGCCGCACTAGAAGTTGGAGGATGTGACTGGGTA
CGCTCCAGGGTGGCGTCGCTAACGCGATGCCGGGAGGCCATGTGGTCTGC
AGTTCGAGATGCGGGAGGTGTTAAGGGCGAGGGAGCTTTTTACTTCCTGA
TCCCTGTGCAGATGGACGAGGATAGAGCAATCGATATGCTCGCTAGGCGT
TTCGGGGTACTGGTCACGCCCGGGAGTTGGAGGATGTGACTGGGTACGCT
CCAGGGTGGCGTCGCTAACGCGATGCCGGGAGGCCATGTGGTCTGCAGTT
CGAGATGCGGGAGGTGTTAAGGGCGAGGGAGCTTTTTACTTCCTGATCCC
TGTGCAGATGGACGAGGATAGAGCAATCGATATGCTCGCTAGGCGTTTCG
GGGTACTGGTCACGCCCGGGAGGGCGTTTGGGGCACCGGGACACATCCGA
GTCTCCTATGGGTCTCTCCCGGAAGAGGAATGCCTCGCTGCCACAGAACG
CCTTCATGATGGCTTGCAGGCTTTGTCAAAAGAAGTGAAAATAAAAGCGT
CATCCTGAGGCGTTTGGGGCACCGGGACACATCCGAGTCTCCTATGGGTC
TCTCCCGGAAGAGGAATGCCTCGCTGCCACAGAACGCCTTCATGATGGCT
TGCAGGCTTTGTCAAAAGAAGTGAAAATAAAAGCGTCATCCTGA
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