mRNA_H-elongata_contig102742.238.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102742.238.1
Unique NamemRNA_H-elongata_contig102742.238.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: D8LGE8_ECTSI (EDR2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGE8_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 5.150e-63
Identity = 107/175 (61.14%), Postives = 130/175 (74.29%), Query Frame = 1
Query:    1 GPTLHAVYYFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRR------------------EAGAGG---------------EYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426
            GPTLHAV+Y  L+EETA+AL DLE+AEP+VRLLAEYFRRAESEPEMR RFKA+AVVNN + I+M RL++PFNGKP+LITESG+L+RG RR                   AG+ G               E+LE+DIHVR+WNFMARKGL+KL PKF ++NVS+AFLVEGR+DSE+
Sbjct:  117 GPTLHAVFYLTLREETAKALQDLESAEPSVRLLAEYFRRAESEPEMRTRFKAIAVVNNQEVINMARLIAPFNGKPVLITESGTLMRGTRRPGAEGEGAPDSVARVESDSAGSNGXXXXXXXXXXXFGADEFLELDIHVRRWNFMARKGLSKLTPKFGLINVSVAFLVEGREDSEL 291          
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A835ZBF7_9STRA (EDR2_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 6.930e-26
Identity = 62/148 (41.89%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 GPTLHAVYYFKLKEETARAL-----DDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGG-EYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426
            GPTL  V+Y  L  E ARAL         A  PA++LL ++   AE++   R RFKA+A +NNL    +   V   NG+P LIT+SG++  G+ R  G G   YLE+D +VR W F+AR+ L  L+P+   +++SI F++EGR D+E+
Sbjct:  281 GPTLQCVFYLALSAEAARALAXXXXXXXXALPPALQLLRDWCEGAEADAHTRSRFKAMARINNLHDAGLPGPVVQNNGRPTLITKSGTVTSGVGRVRGGGSARYLELDCNVRHWCFLARRALRHLLPRAPRVHLSIGFVIEGRADAEL 428          
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: W7U5D7_9STRA (EDR2_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5D7_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.810e-25
Identity = 64/161 (39.75%), Postives = 92/161 (57.14%), Query Frame = 1
Query:    1 GPTLHAVYYFKLKEETARAL-----------------DDLEA--AEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426
            GP   A++ F LKE T   L                 D  EA    PA++LL EYFRRA  +P++R R K +A   N+D + +   +S +NGKP+LIT+SG L +GI    G    Y+EMDI V ++ ++ARKG   L  +F+ + + IAFLVEGR++ E+
Sbjct:  214 GPGRSAIFVFALKESTVDMLEAHADSPSAAVRERKGKDHREAFSVPPALQLLQEYFRRAPHDPDVRGRLKVIASCANMDALHLPSFISNYNGKPVLITKSGRLHQGISSSNGEDLLYIEMDICVHRFAYVARKGFRYLQKRFSKMILDIAFLVEGREEDEL 374          
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S2KYG5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KYG5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.190e-24
Identity = 55/142 (38.73%), Postives = 85/142 (59.86%), Query Frame = 1
Query:    1 GPTLHAVYYFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426
            GP   AV Y  + ++T   L DL+ A PAV+LL E+ RRAE +   R R K + V ++++ + +   ++ +NGKP LIT SG+L R       A   YLEM++++R WN +ARKG++ L P       ++A  +EGRD+ E+
Sbjct:  557 GPCCMAVLYLAISKQTLLELKDLKTASPAVKLLEEWCRRAEGDFAFRSRCKFMVVADDVEALGVPSFLTRYNGKPCLITSSGTLTR----HRDAASHYLEMNVNIRMWNALARKGIHSLKPYIPSATFNLAITIEGRDNDEL 694          
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S2MX10_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MX10_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.740e-23
Identity = 53/141 (37.59%), Postives = 86/141 (60.99%), Query Frame = 1
Query:    4 PTLHAVYYFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426
            P+   V  F +++     L D++ A PAV+LLAE+ R AE+  E R RFKA+ +V  ++++ +   ++ +NGKP LIT+SG+  R  +        Y+EM I+V  W ++ARKG+  L+P F  L +++ F +EGR D E+
Sbjct:  119 PSYICVIVFAIEQWVVEELKDIDNASPAVKLLAEWCREAETNVEFRGRFKAIGLVEEMEKMGIPGFITQYNGKPTLITKSGNFTRHEK--------YIEMAINVHLWAYVARKGMLTLLPSFAKLLINVGFTIEGRSDMEL 251          
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S2M600_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M600_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.080e-22
Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = 1
Query:    1 GPTLHAVYYFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426
            G T      F L ++T   L D++ A P V+LL+E+ RRAESEP+ + RFK +  + +++   + + +  +NGKP L+T+SG+  R           Y+E  I+V  W F+ARKGL+ LMP F     ++ F +E R D E+
Sbjct:  441 GDTYSIPMVFVLSKDTLEQLKDIDTASPGVKLLSEWCRRAESEPDFKGRFKCMGQIEDIESTSIPKFIHGYNGKPALVTKSGTFTRH--------ENYIEFTINVNYWAFLARKGLHSLMPYFQDFIFNVGFTIEARHDEEM 574          
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S1ZG30_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZG30_TRICV)

HSP 1 Score: 95.5 bits (236), Expect = 1.940e-21
Identity = 55/139 (39.57%), Postives = 81/139 (58.27%), Query Frame = 1
Query:   19 VYYFKLKEETARALDDLEA---AEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426
            ++Y K    T R LD+L       PA RL   + +  +++  +R RFK +A+V NL    +  L  P+NGKP+LITESGS  RG   E   G +YLEM  +V KW F+A+KG   L+P+F  + + + F VE  ++SE+
Sbjct:   59 IFYLK---PTQRLLDELTGKIPTSPAARLFLRWCQTCDTDRALRSRFKCMALVRNLKSHKLGWL-DPYNGKPVLITESGSARRGTTSE---GVKYLEMKSNVHKWAFVAKKGFVSLIPRFREMRIDVGFTVESTEESEM 190          
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S2W974_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W974_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.530e-21
Identity = 52/142 (36.62%), Postives = 85/142 (59.86%), Query Frame = 1
Query:    1 GPTLHAVYYFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426
            GPTL+AV+YF L+EET +AL  LE A  AV+LL  + R A ++P +  RFK + ++ N +++ M  ++  +NGKP+LI  + S ++G         + + M ++VR W  +AR GL+ L       ++ + F +EGR D E+
Sbjct:  171 GPTLNAVFYFGLREETQQALASLETAPKAVQLLETFCRSAHADPSVFNRFKCIGMLRNYEEVGMPSIMKGYNGKPVLI-RNRSAVKGGSGVMDQQQDSIIMHVNVRLWPLLARTGLHTLFGASAKCDLDVGFTIEGRADDEL 311          
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S4V5X3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V5X3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.040e-21
Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 1
Query:   25 YFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426
            Y K  +   + L       PA +L A +    E++  MR RFK +A V N+++ ++  +V  +NGKP+L+TESG    G+  + G    YLEM  +V  W+FMA+KG   L+PKF  +++ +   +E +DD E+
Sbjct:   26 YLKPSKRFLQELSGQRPKTPATKLFANWCATCETDKTMRSRFKCMASVRNIEKHNLG-MVKSYNGKPVLVTESGCAKWGVTEDGGVN--YLEMSANVHAWSFMAKKGFVSLIPKFQEISLDVGITIEAKDDDEM 156          
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S2EV63_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EV63_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.300e-20
Identity = 46/134 (34.33%), Postives = 75/134 (55.97%), Query Frame = 1
Query:   25 YFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426
            Y K  +   + L       PA +L   +    E++  MR RFK +A V N+++ ++  +V  +NGKP+L+TESG    G+  + G    YLEM  +V  W+FMA+KG   L+PKF  +++ +   +E +DD E+
Sbjct:   53 YLKPSKRFLQELSGQRPKTPATKLFVNWCATCETDKTMRSRFKCMASVRNIEKHNLG-MVKSYNGKPVLVTESGCAKWGVTEDGGVN--YLEMSANVHAWSFMAKKGFVSLIPKFQEISLDVGITIEAKDDDEM 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGE8_ECTSI5.150e-6361.14EDR2_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835ZBF7_9STRA6.930e-2641.89EDR2_C domain-containing protein n=1 Tax=Tribonema... [more]
W7U5D7_9STRA3.810e-2539.75EDR2_C domain-containing protein n=2 Tax=Monodopsi... [more]
A0A7S2KYG5_9STRA7.190e-2438.73Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2MX10_9STRA1.740e-2337.59Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2M600_9STRA1.080e-2236.62Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1ZG30_TRICV1.940e-2139.57Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2W974_9STRA3.530e-2136.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4V5X3_9STRA6.040e-2135.07Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2EV63_9STRA4.300e-2034.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102742contigH-elongata_contig102742:971..1728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.1
Seed ortholog evalue1.1e-50
Seed eggNOG ortholog2880.D8LGE8
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs2CYY6@1,2S76H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF1336
Ec32 orthologEc-16_003780.1
Exons3
Model size435
Cds size435
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102742.238.1prot_H-elongata_contig102742.238.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102742 971..1728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929564.775014-CDS-H-elongata_contig102742:970..10831622929564.775014-CDS-H-elongata_contig102742:970..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102742 971..1083 +
1691679072.4613335-CDS-H-elongata_contig102742:970..10831691679072.4613335-CDS-H-elongata_contig102742:970..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102742 971..1083 +
1622929564.7909327-CDS-H-elongata_contig102742:1319..14971622929564.7909327-CDS-H-elongata_contig102742:1319..1497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102742 1320..1497 +
1691679072.4728868-CDS-H-elongata_contig102742:1319..14971691679072.4728868-CDS-H-elongata_contig102742:1319..1497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102742 1320..1497 +
1622929564.8079877-CDS-H-elongata_contig102742:1584..17281622929564.8079877-CDS-H-elongata_contig102742:1584..1728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102742 1585..1728 +
1691679072.4829388-CDS-H-elongata_contig102742:1584..17281691679072.4829388-CDS-H-elongata_contig102742:1584..1728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102742 1585..1728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102742.238.1

>prot_H-elongata_contig102742.238.1 ID=prot_H-elongata_contig102742.238.1|Name=mRNA_H-elongata_contig102742.238.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
GPTLHAVYYFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRF
KALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLE
MDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEVRI*
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mRNA from alignment at H-elongata_contig102742:971..1728+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102742.238.1 ID=mRNA_H-elongata_contig102742.238.1|Name=mRNA_H-elongata_contig102742.238.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=758bp|location=Sequence derived from alignment at H-elongata_contig102742:971..1728+ (Himanthalia elongata Himel1 dioecious)
GGACCAACCTTGCACGCGGTATACTACTTCAAGCTCAAGGAGGAGACGGC CCGCGCCCTTGATGATCTCGAGGCCGCGGAACCCGCCGTGCGTTTGCTTG CTGAATACTTCAGGTGCGTGGCCTCGGACAAGACACACCGAATGTTGCGA CATGCCAGCCTTTCTCTCGCGTTTGGCGGAGCGTGTGAACGATTTAGCCG TGTTGAGACTCTAACCCCGAACCTAAAAATTCTTGATCGTCTCAAGGTCG ATACCACTCGTCGACCGCTCGGAACGAGTGGAAAAAAGTCGTTTAGACCT ACGTCTTCCGTAGAACGTGACCTCTGGTCGCCACCCGCAACTCGTGCAGG CGAGCGGAGTCGGAGCCGGAAATGAGGAAGCGATTTAAGGCACTCGCAGT TGTGAACAATCTGGACCAGATCGACATGAACCGATTAGTGTCGCCCTTCA ACGGTAAGCCAATCCTCATTACCGAGAGCGGCTCGCTCCTGAGAGGGATC CGACGGGAGGCAGGAGCAGGTGGGGAAGTAAAATATGGTCCTCTCACTGG AAGCGAGGCGACAGGAGGTGGCGCTAGTGGTGGCGGCGACGGAAACAGCT TCGGCCCGGAAGAGTATTTAGAGATGGACATTCACGTGCGAAAGTGGAAC TTCATGGCGCGTAAAGGGTTGAACAAGCTCATGCCCAAGTTCAACATGTT GAACGTGAGCATCGCGTTTTTGGTGGAGGGGAGAGACGACTCAGAGGTAA GAATTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig102742:971..1728+

>mRNA_H-elongata_contig102742.238.1 ID=mRNA_H-elongata_contig102742.238.1|Name=mRNA_H-elongata_contig102742.238.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig102742:971..1728+ (Himanthalia elongata Himel1 dioecious)
GGACCAACCTTGCACGCGGTATACTACTTCAAGCTCAAGGAGGAGACGGC
CCGCGCCCTTGATGATCTCGAGGCCGCGGAACCCGCCGTGCGTTTGCTTG
CTGAATACTTCAGGGACCAACCTTGCACGCGGTATACTACTTCAAGCTCA
AGGAGGAGACGGCCCGCGCCCTTGATGATCTCGAGGCCGCGGAACCCGCC
GTGCGTTTGCTTGCTGAATACTTCAGGCGAGCGGAGTCGGAGCCGGAAAT
GAGGAAGCGATTTAAGGCACTCGCAGTTGTGAACAATCTGGACCAGATCG
ACATGAACCGATTAGTGTCGCCCTTCAACGGTAAGCCAATCCTCATTACC
GAGAGCGGCTCGCTCCTGAGAGGGATCCGACGGGAGGCAGGAGCAGGTGG
GGAAGCGAGCGGAGTCGGAGCCGGAAATGAGGAAGCGATTTAAGGCACTC
GCAGTTGTGAACAATCTGGACCAGATCGACATGAACCGATTAGTGTCGCC
CTTCAACGGTAAGCCAATCCTCATTACCGAGAGCGGCTCGCTCCTGAGAG
GGATCCGACGGGAGGCAGGAGCAGGTGGGGAATATTTAGAGATGGACATT
CACGTGCGAAAGTGGAACTTCATGGCGCGTAAAGGGTTGAACAAGCTCAT
GCCCAAGTTCAACATGTTGAACGTGAGCATCGCGTTTTTGGTGGAGGGGA
GAGACGACTCAGAGGTAAGAATTTAGTATTTAGAGATGGACATTCACGTG
CGAAAGTGGAACTTCATGGCGCGTAAAGGGTTGAACAAGCTCATGCCCAA
GTTCAACATGTTGAACGTGAGCATCGCGTTTTTGGTGGAGGGGAGAGACG
ACTCAGAGGTAAGAATTTAG
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