mRNA_H-elongata_contig133394.2373.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133394.2373.1
Unique NamemRNA_H-elongata_contig133394.2373.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig133394.2373.1 vs. uniprot
Match: A0A6H5K809_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K809_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.210e-16
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 GKQDRSSAYIKDEGGVLLRDAVLIRERWARWFQTLLNIKSPALEPNITEG---------LDQIQPTMQKLTDAIRSLANGKTVGPDGVSVELLK 255
            GK+  +S  IKDE G +LRD   IR+RWARWF  LLNIKSP ++ +  +          LD I P++ ++ +A+R +AN K +GPD +  EL+K
Sbjct:    6 GKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNIKSPTIDLHAADKVKLWPTCVPLDDI-PSLLEVEEAVREMANRKAIGPDDLPAELIK 98
[Close]
BLAST of mRNA_H-elongata_contig133394.2373.1 vs. uniprot
Match: A0A6H5K9P7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P7_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.800e-14
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:   16 SSAYIKDEGGVLLRDAVLIRERWARWFQTLLNIKSPALEPNITEG---------LDQIQPTMQKLTDAIRSLANGKTVGPDGVSVELLK 255
            +S  IKDE G +LRD   IR+RWARWF TLLNIK P ++ +  +          LD I P++ ++ +A+R +AN K VGPD +  EL+K
Sbjct:  180 TSQNIKDEDGKVLRDPTCIRQRWARWFHTLLNIKPPTIDLHAADKVKRWPTCVPLDDI-PSLLEVEEAVREMANRKAVGPDDLPAELIK 267
[Close]
BLAST of mRNA_H-elongata_contig133394.2373.1 vs. uniprot
Match: A0A6H5L1L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1L4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.380e-13
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    1 GKQDRSSAYIKDEGGVLLRDAVLIRERWARWFQTLLNIKSPALEPNITEGLDQIQPT-----MQKLTDAIRSLANGKTVGPDGVSVELLK 255
            G+Q R   ++ DE GVLLR+   I +RWAR+F TLLN KSPAL P+I E + Q   T     ++++  A + L N K  G D +  ELLK
Sbjct:  146 GRQARGQQFVADENGVLLRNRDDILQRWARFFSTLLNFKSPALNPDIIERVTQRPATVTLNELEEVARATKDLKNWKAPGHDSLPAELLK 235
[Close]
BLAST of mRNA_H-elongata_contig133394.2373.1 vs. uniprot
Match: A0A6H5KHC4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHC4_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.560e-13
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 GKQDRSSAYIKDEGGVLLRDAVLIRERWARWFQTLLNIKSPALEPNITEGLDQ-----------IQPTMQKLTDAIRSLANGKTVGPDGVSVELLK 255
            G+Q     ++ DE GVLLR+   I +RW R+F TLLN KSP L P++ E + Q             P ++++  A + L N K VGPD ++ ELLK
Sbjct:   52 GRQAGGQQFVTDENGVLLRNKNAILKRWRRFFDTLLNSKSPTLNPDVVEQVTQRPATRATRRLAAVPDLEEVEVATKGLGNWKAVGPDLLAAELLK 147
[Close]
BLAST of mRNA_H-elongata_contig133394.2373.1 vs. uniprot
Match: A0A6H5KEQ6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.690e-13
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 GKQDRSSAYIKDEGGVLLRDAVLIRERWARWFQTLLNIKSPALEPNITEGLDQ-----------IQPTMQKLTDAIRSLANGKTVGPDGVSVELLK 255
            G+Q     ++ DE GVLLR+   I +RW R+F TLLN KSP L P++ E + Q             P ++++  A + L N K VGPD ++ ELLK
Sbjct:   16 GRQAGGQQFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLK 111
[Close]
BLAST of mRNA_H-elongata_contig133394.2373.1 vs. uniprot
Match: A0A6H5K963_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K963_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.480e-12
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 GKQDRSSAYIKDEGGVLLRDAVLIRERWARWFQTLLNIKSPALEPNITEGLDQ-----------IQPTMQKLTDAIRSLANGKTVGPDGVSVELLK 255
            G+Q     ++ DE GVLLR+   I +RW R+F TLLN KSP L P++ E + Q             P ++++  A + L N K VGPD ++ ELLK
Sbjct:  115 GRQAGGQQFVTDENGVLLRNKNAILKRWRRFFDTLLNSKSPTLNPDVVEQVTQRPATRATRRLAAVPDLEEVEVATKGLGNWKAVGPDLLAAELLK 210
[Close]
BLAST of mRNA_H-elongata_contig133394.2373.1 vs. uniprot
Match: A0A6H5JJQ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJQ9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.860e-12
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:    1 GKQDRSSAYIKDEGGVLLRDAVLIRERWARWFQTLLNIKSPALEPNITEGLDQIQ-----------PTMQKLTDAIRSLANGKTVGPDGVSVELLK 255
            G+Q R   ++ DE GVLLR+   I +RWAR+F TLLN KSP L P+I E + Q             P ++++  A + L N K  G D +  ELLK
Sbjct:   16 GRQARGQQFVADEDGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLK 111
[Close]
BLAST of mRNA_H-elongata_contig133394.2373.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.030e-12
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 GKQDRSSAYIKDEGGVLLRDAVLIRERWARWFQTLLNIKSPALEPNITEGLDQ-----------IQPTMQKLTDAIRSLANGKTVGPDGVSVELLK 255
            G+Q     ++ DE GVLLR+   I +RW R+F TLLN KSP L P++ E + Q             P ++++  A + L N K VGPD ++ ELLK
Sbjct:  502 GRQAGGQQFVTDENGVLLRNKNAILKRWRRFFDTLLNSKSPTLNPDVVEQVTQRPATRAIRHLAAVPDLEEIEVATKGLGNWKAVGPDLLAAELLK 597
[Close]
BLAST of mRNA_H-elongata_contig133394.2373.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.820e-12
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 GKQDRSSAYIKDEGGVLLRDAVLIRERWARWFQTLLNIKSPALEPNITEGLDQ-----------IQPTMQKLTDAIRSLANGKTVGPDGVSVELLK 255
            G+Q     ++ DE GVLLR+   I +RW R+F TLLN KSP L P++ E + Q             P ++++  A + L N K VGPD ++ ELLK
Sbjct:  118 GRQAGGQQFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLK 213
[Close]
BLAST of mRNA_H-elongata_contig133394.2373.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.870e-12
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 GKQDRSSAYIKDEGGVLLRDAVLIRERWARWFQTLLNIKSPALEPNITEGLDQ-----------IQPTMQKLTDAIRSLANGKTVGPDGVSVELLK 255
            G+Q     ++ DE GVLLR+   I +RW R+F TLLN KSP L P++ E + Q             P ++++  A + L N K VGPD ++ ELLK
Sbjct:  447 GRQAGGQQFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLK 542
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133394.2373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K809_9PHAE4.210e-1643.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9P7_9PHAE1.800e-1444.94Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L1L4_9PHAE2.380e-1344.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHC4_9PHAE2.560e-1339.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KEQ6_9PHAE2.690e-1339.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K963_9PHAE1.480e-1239.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JJQ9_9PHAE1.860e-1240.63Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQZ7_9PHAE2.030e-1239.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JEX7_9PHAE3.820e-1239.58Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE3.870e-1239.58Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133394contigH-elongata_contig133394:37..315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.4691074-CDS-H-elongata_contig133394:36..1331622929791.4691074-CDS-H-elongata_contig133394:36..133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133394 37..133 -
1691679159.0742402-CDS-H-elongata_contig133394:36..1331691679159.0742402-CDS-H-elongata_contig133394:36..133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133394 37..133 -
1622929791.4841685-CDS-H-elongata_contig133394:157..3151622929791.4841685-CDS-H-elongata_contig133394:157..315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133394 158..315 -
1691679159.084029-CDS-H-elongata_contig133394:157..3151691679159.084029-CDS-H-elongata_contig133394:157..315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133394 158..315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133394.2373.1prot_H-elongata_contig133394.2373.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133394 37..315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133394.2373.1

>prot_H-elongata_contig133394.2373.1 ID=prot_H-elongata_contig133394.2373.1|Name=mRNA_H-elongata_contig133394.2373.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
GKQDRSSAYIKDEGGVLLRDAVLIRERWARWFQTLLNIKSPALEPNITEG
LDQIQPTMQKLTDAIRSLANGKTVGPDGVSVELLK
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mRNA from alignment at H-elongata_contig133394:37..315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133394.2373.1 ID=mRNA_H-elongata_contig133394.2373.1|Name=mRNA_H-elongata_contig133394.2373.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig133394:37..315- (Himanthalia elongata Himel1 dioecious)
GGGAAGCAAGACCGCAGCTCGGCGTACATCAAAGACGAGGGCGGCGTACT
CCTGAGAGACGCTGTACTTATCCGTGAACGATGGGCCCGCTGGTTCCAAA
CCCTCTTGAACATCAAATCGCCGGCGCTCGAGCCGAACATCACTGAAGGC
CTCGACCAGTGACCAGAGAACACGCCGCTGAGAATTCAGCCCACGATGCA
GAAGTTGACAGACGCCATTCGCTCGTTAGCGAACGGAAAGACTGTTGGAC
CGGACGGAGTCTCAGTTGAACTGCTCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig133394:37..315-

>mRNA_H-elongata_contig133394.2373.1 ID=mRNA_H-elongata_contig133394.2373.1|Name=mRNA_H-elongata_contig133394.2373.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig133394:37..315- (Himanthalia elongata Himel1 dioecious)
GGGAAGCAAGACCGCAGCTCGGCGTACATCAAAGACGAGGGCGGCGTACT
CCTGAGAGACGCTGTACTTATCCGTGAACGATGGGCCCGCTGGTTCCAAA
CCCTCTTGAACATCAAATCGCCGGCGCTCGAGCCGAACATCACTGAAGGC
CTCGACCAGGGAAGCAAGACCGCAGCTCGGCGTACATCAAAGACGAGGGC
GGCGTACTCCTGAGAGACGCTGTACTTATCCGTGAACGATGGGCCCGCTG
GTTCCAAACCCTCTTGAACATCAAATCGCCGGCGCTCGAGCCGAACATCA
CTGAAGGCCTCGACCAAATTCAGCCCACGATGCAGAAGTTGACAGACGCC
ATTCGCTCGTTAGCGAACGGAAAGACTGTTGGACCGGACGGAGTCTCAGT
TGAACTGCTCAAGAATTCAGCCCACGATGCAGAAGTTGACAGACGCCATT
CGCTCGTTAGCGAACGGAAAGACTGTTGGACCGGACGGAGTCTCAGTTGA
ACTGCTCAAG
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