mRNA_H-elongata_contig133377.2372.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133377.2372.1
Unique NamemRNA_H-elongata_contig133377.2372.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig133377.2372.1 vs. uniprot
Match: D7FYP8_ECTSI (Glutamate synthase, N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP8_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 3.720e-49
Identity = 82/102 (80.39%), Postives = 95/102 (93.14%), Query Frame = 1
Query:    1 EIRQYFVEADNESVPFSRNHRSVVYSRAKGTPDTLPFGTRRDVYREGYEWISHSMFPVELSEVELRSTVGGPLVTQPHSAALLNVSAMSHGALSNNAILALS 306
            EIRQYF+E+D+ESVPFSR HRSVVY+RAKG+ DTLPFGTRRD+Y+EGYEWI HSM+P + S VELR+TVGGPLVTQ +SAALLNVSAMS+GALS+NAILALS
Sbjct:  101 EIRQYFIESDSESVPFSRAHRSVVYARAKGSSDTLPFGTRRDLYKEGYEWICHSMYPAKPSNVELRATVGGPLVTQKYSAALLNVSAMSYGALSDNAILALS 202          
BLAST of mRNA_H-elongata_contig133377.2372.1 vs. uniprot
Match: A0A6H5JVG8_9PHAE (Glu_synthase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG8_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.990e-48
Identity = 83/102 (81.37%), Postives = 96/102 (94.12%), Query Frame = 1
Query:    1 EIRQYFVEADNESVPFSRNHRSVVYSRAKGTPDTLPFGTRRDVYREGYEWISHSMFPVELSEVELRSTVGGPLVTQPHSAALLNVSAMSHGALSNNAILALS 306
            EIRQYF+E+D+ESVPFSR HRSVVY+RAKG PDTLPFGTRRD+Y+EGYEWI HSM+P + S+VELR+TVGGPLVTQ +SAALLNVSAMS+GALS+NAILALS
Sbjct:  100 EIRQYFIESDSESVPFSRAHRSVVYARAKGCPDTLPFGTRRDLYKEGYEWICHSMYPAKPSDVELRATVGGPLVTQKYSAALLNVSAMSYGALSDNAILALS 201          
BLAST of mRNA_H-elongata_contig133377.2372.1 vs. uniprot
Match: A0A358NCF9_9BACT (FMN-binding glutamate synthase family protein (Fragment) n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A358NCF9_9BACT)

HSP 1 Score: 133 bits (334), Expect = 2.450e-37
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    1 EIRQYFVEADNESVPFSRNHRSVVYSRAKGTPDTLPFGTRRDVYREGYEWISHSMFPVELSEVELRSTVGGPLVTQPHSAALLNVSAMSHGALSNNAILALS 306
            EI QYFVE+D + VPF R+ RS+VY RAK   DT+PFGT+ +VY  GYEW++HSM PV  +  ++R T+GGP  TQP+SA+LLN+SAMS+GALS NAILALS
Sbjct:   71 EIYQYFVESDTDGVPFDRDTRSLVYQRAKDVRDTVPFGTKENVYEVGYEWVNHSMAPVHNAPEDMRVTIGGPDCTQPYSASLLNISAMSYGALSKNAILALS 172          
BLAST of mRNA_H-elongata_contig133377.2372.1 vs. uniprot
Match: A0A813J9W5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J9W5_POLGL)

HSP 1 Score: 136 bits (343), Expect = 3.550e-37
Identity = 63/102 (61.76%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    1 EIRQYFVEADNESVPFSRNHRSVVYSRAKGTPDTLPFGTRRDVYREGYEWISHSMFPVELSEVELRSTVGGPLVTQPHSAALLNVSAMSHGALSNNAILALS 306
            EI+QY +E+D+ +VPFSR+ RSV+Y RAK  PDT   GTR DVY+EGYEW++HSMFPV + ++  R  +GGP  TQP+SA+LLN+SAMS+GALS NAI AL+
Sbjct:  120 EIQQYLIESDDVAVPFSRHMRSVIYQRAKQAPDTRALGTRMDVYKEGYEWVNHSMFPVPIEQINTRVMIGGPACTQPYSASLLNISAMSYGALSGNAISALN 221          
BLAST of mRNA_H-elongata_contig133377.2372.1 vs. uniprot
Match: UPI0019902A14 (Uncharacterized protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI0019902A14)

HSP 1 Score: 130 bits (328), Expect = 2.330e-35
Identity = 64/105 (60.95%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 EIRQYFVEADNESVPFSRNHRSVVYSRAKGTPDTLPFGTRRDVYREGYEWISHSMFPVELSEVELRSTVGGP--LVTQPHSAALLNVSAMSHGALSNNAILALSG 309
            E+RQYF+E+DNE+ PFSR  RS+VY RAKG PD  PFGT+ DV+  GYEWI+HSM P EL   + R T+GG     TQP+SA++ N+SAMS GALS NA+LAL+G
Sbjct:   84 EMRQYFIESDNEAAPFSRQQRSLVYQRAKGDPDKRPFGTQLDVHASGYEWINHSMAPTELPTHDFRITIGGSGTSCTQPYSASIFNISAMSFGALSANAVLALNG 188          
BLAST of mRNA_H-elongata_contig133377.2372.1 vs. uniprot
Match: A0A835YM27_9STRA (Glu_synthase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM27_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.220e-35
Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = 1
Query:    1 EIRQYFVEADNESVPFSRNHRSVVYSRAKGTPDTLPFGTRRDVYREGYEWISHSMFPVELSEVELRSTVGGPLVTQPHSAALLNVSAMSHGALSNNAILALSG 309
            EIRQYF+E+D +SVPFSR  RS+VY RAK   D LPFGTRR+ Y EGYEWI HS+ PV L +   R  VGGP   QP+SA+++NVSAMS+G++S NA+LAL+G
Sbjct:   68 EIRQYFIESDTDSVPFSRAQRSIVYQRAKLQTDNLPFGTRRNTYGEGYEWIKHSLSPVHLDDACGRKVVGGPHCKQPYSASIMNVSAMSYGSISKNAVLALNG 170          
BLAST of mRNA_H-elongata_contig133377.2372.1 vs. uniprot
Match: A0A813G4Z2_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G4Z2_POLGL)

HSP 1 Score: 136 bits (343), Expect = 3.570e-35
Identity = 63/102 (61.76%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    1 EIRQYFVEADNESVPFSRNHRSVVYSRAKGTPDTLPFGTRRDVYREGYEWISHSMFPVELSEVELRSTVGGPLVTQPHSAALLNVSAMSHGALSNNAILALS 306
            EI+QY +E+D+ +VPFSR+ RSV+Y RAK  PDT   GTR DVY+EGYEW++HSMFPV + ++  R  +GGP  TQP+SA+LLN+SAMS+GALS NAI AL+
Sbjct:  151 EIQQYLIESDDVAVPFSRHMRSVIYQRAKQAPDTRALGTRMDVYKEGYEWVNHSMFPVPIEQINTRVMIGGPACTQPYSASLLNISAMSYGALSGNAISALN 252          
BLAST of mRNA_H-elongata_contig133377.2372.1 vs. uniprot
Match: A0A2D7E575_9BACT (FMN-binding glutamate synthase family protein n=2 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2D7E575_9BACT)

HSP 1 Score: 135 bits (339), Expect = 3.750e-35
Identity = 65/102 (63.73%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    1 EIRQYFVEADNESVPFSRNHRSVVYSRAKGTPDTLPFGTRRDVYREGYEWISHSMFPVELSEVELRSTVGGPLVTQPHSAALLNVSAMSHGALSNNAILALS 306
            EI QYFVE+D + VPF R+ RS+VY RAK   DT+PFGT+ DVY  GYEW++HSM PV  +  ++R T+GGP  TQP+SA+LLN+SAMS+GALS NAILALS
Sbjct:   71 EIYQYFVESDTDGVPFDRDTRSLVYQRAKDVRDTVPFGTKEDVYEVGYEWVNHSMAPVHNAPEDMRVTIGGPDCTQPYSASLLNISAMSYGALSKNAILALS 172          
BLAST of mRNA_H-elongata_contig133377.2372.1 vs. uniprot
Match: A0A7S4BDZ3_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BDZ3_CHRCT)

HSP 1 Score: 133 bits (335), Expect = 4.250e-35
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    1 EIRQYFVEADNESVPFSRNHRSVVYSRAKGTPDTLPFGTRRDVYREGYEWISHSMFPVELSEVELRSTVGGPLVTQPHSAALLNVSAMSHGALSNNAILALS 306
            EI+QYF+E D+ + PFSR+ RS++Y R+KG PDT   GTR DVYREGYEWI+HSMFPV +S V  R  +GG   T+P+SA+LLN+SAMS+GALS NAI AL+
Sbjct:  213 EIQQYFIETDHAAEPFSRSMRSLIYQRSKGQPDTRALGTRLDVYREGYEWINHSMFPVPVSAVNKRVQIGGQACTKPYSASLLNISAMSYGALSGNAISALN 314          
BLAST of mRNA_H-elongata_contig133377.2372.1 vs. uniprot
Match: A0A813DU75_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DU75_POLGL)

HSP 1 Score: 130 bits (328), Expect = 4.890e-35
Identity = 60/98 (61.22%), Postives = 78/98 (79.59%), Query Frame = 1
Query:   13 YFVEADNESVPFSRNHRSVVYSRAKGTPDTLPFGTRRDVYREGYEWISHSMFPVELSEVELRSTVGGPLVTQPHSAALLNVSAMSHGALSNNAILALS 306
            Y +E+D+ +VPFSR+ RSV+Y RAK  PDT   GTR DVY+EGYEW++HSMFPV + ++  R  +GGP  TQP+SA+LLN+SAMS+GALS NAI AL+
Sbjct:    1 YLIESDDVAVPFSRHMRSVIYQRAKQAPDTRALGTRMDVYKEGYEWVNHSMFPVPIEQINTRVMIGGPACTQPYSASLLNISAMSYGALSGNAISALN 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133377.2372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYP8_ECTSI3.720e-4980.39Glutamate synthase, N-terminal n=1 Tax=Ectocarpus ... [more]
A0A6H5JVG8_9PHAE1.990e-4881.37Glu_synthase domain-containing protein n=1 Tax=Ect... [more]
A0A358NCF9_9BACT2.450e-3762.75FMN-binding glutamate synthase family protein (Fra... [more]
A0A813J9W5_POLGL3.550e-3761.76Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
UPI0019902A142.330e-3560.95Uncharacterized protein n=1 Tax=Chitinophagaceae b... [more]
A0A835YM27_9STRA3.220e-3562.14Glu_synthase domain-containing protein n=1 Tax=Tri... [more]
A0A813G4Z2_POLGL3.570e-3561.76Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A2D7E575_9BACT3.750e-3563.73FMN-binding glutamate synthase family protein n=2 ... [more]
A0A7S4BDZ3_CHRCT4.250e-3562.75Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A813DU75_POLGL4.890e-3561.22Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133377contigH-elongata_contig133377:432..1605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue8.4e-40
Seed eggNOG ortholog2880.D7FYP8
EggNOG OGs2D4BX@1,2SUMN@2759
Ec32 ortholog descriptionGlutamate synthase, N-terminal fragment
Ec32 orthologEc-26_004260.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.3873298-CDS-H-elongata_contig133377:431..5661622929791.3873298-CDS-H-elongata_contig133377:431..566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133377 432..566 +
1691679159.0385687-CDS-H-elongata_contig133377:431..5661691679159.0385687-CDS-H-elongata_contig133377:431..566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133377 432..566 +
1622929791.410202-CDS-H-elongata_contig133377:1428..16051622929791.410202-CDS-H-elongata_contig133377:1428..1605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133377 1429..1605 +
1691679159.060505-CDS-H-elongata_contig133377:1428..16051691679159.060505-CDS-H-elongata_contig133377:1428..1605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133377 1429..1605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133377.2372.1prot_H-elongata_contig133377.2372.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133377 432..1605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133377.2372.1

>prot_H-elongata_contig133377.2372.1 ID=prot_H-elongata_contig133377.2372.1|Name=mRNA_H-elongata_contig133377.2372.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
EIRQYFVEADNESVPFSRNHRSVVYSRAKGTPDTLPFGTRRDVYREGYEW
ISHSMFPVELSEVELRSTVGGPLVTQPHSAALLNVSAMSHGALSNNAILA
LSG*
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mRNA from alignment at H-elongata_contig133377:432..1605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133377.2372.1 ID=mRNA_H-elongata_contig133377.2372.1|Name=mRNA_H-elongata_contig133377.2372.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1174bp|location=Sequence derived from alignment at H-elongata_contig133377:432..1605+ (Himanthalia elongata Himel1 dioecious)
GAGATCCGTCAGTACTTCGTGGAAGCGGACAACGAAAGCGTGCCCTTCTC CCGCAACCACCGCTCCGTGGTGTACTCCCGCGCCAAGGGGACCCCGGACA CGTTGCCCTTCGGCACGCGGCGCGACGTCTATCGGGTATGCATGCGATTG GAATGTTACTTGTAATACGCTAGTGTATCTGTGTCTTGTGTGTTCGTCAC ACTAGTAATAGTCTATAATATTATCCGATTGGAGCCTCCAACCGACCATA CCGGTTGCATTGAAGTGCCAATTTCATTGTGATACGTAAAGGGACTCACC AAGCTCAACGATATATCGCAGGCGTTTTTTTGCGGGGATAGCGTGCACGC GAAGGTGTCGTTTTGATATGCGCTTTCCCACACTAACCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCACACTAGTAAGATAGCGGGGGTTGGAGGATGGA AGGAGTAGAATCGTGCGCATGTCCGCTGCTGTTGAAGATCTCTTGAGGAG CAACACTTCTGATCGCTGTTTTGAGGTTTGCCGTTTGCCGTTTCTGTGTG GACCGAGTCTTGCGTGCCGTCGATCCCTCCCTCGCCGAGTGCGACAGAAC CACCGATATTGTCAAGTAAATGATCGCCCTTTGTTTCTAAAAGCCTCGAG AACCTGACGTGTGCAAGGTAATGGTAATAATATCCACGGTAAGCCTATAA TGTCTATAATGGTAATAGTATCAACGATAACCCTTGCCTGCTGGTACTGG TACAGTATACTGCCGACTAATTATAGTATACATATACACATGTATACACT ATTGTAGATGATACTTGTAGCTACTCTAGATAGGCAAGTGACGAAACGCA ACGGGTGTTCCAATAAGCTTCCATTCCATTATTTTACCGAGACCCCGCTC CCCTTTTACATAGTCAGCCTATATATATATATATATATATATCCCTCCCT CCCTCCCCGCTTCCCTGGGTGCAAACGCCTCTTTATTTTCGCTGCAGGAA GGATATGAGTGGATCTCTCACAGCATGTTCCCCGTCGAGCTCTCCGAGGT CGAGCTGAGGTCTACCGTCGGCGGGCCGCTGGTGACGCAACCCCACTCAG CGGCGTTGCTGAACGTTAGCGCCATGTCGCACGGCGCGCTCAGCAACAAC GCCATCCTCGCGCTCAGCGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig133377:432..1605+

>mRNA_H-elongata_contig133377.2372.1 ID=mRNA_H-elongata_contig133377.2372.1|Name=mRNA_H-elongata_contig133377.2372.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig133377:432..1605+ (Himanthalia elongata Himel1 dioecious)
GAGATCCGTCAGTACTTCGTGGAAGCGGACAACGAAAGCGTGCCCTTCTC
CCGCAACCACCGCTCCGTGGTGTACTCCCGCGCCAAGGGGACCCCGGACA
CGTTGCCCTTCGGCACGCGGCGCGACGTCTATCGGGAGATCCGTCAGTAC
TTCGTGGAAGCGGACAACGAAAGCGTGCCCTTCTCCCGCAACCACCGCTC
CGTGGTGTACTCCCGCGCCAAGGGGACCCCGGACACGTTGCCCTTCGGCA
CGCGGCGCGACGTCTATCGGGAAGGATATGAGTGGATCTCTCACAGCATG
TTCCCCGTCGAGCTCTCCGAGGTCGAGCTGAGGTCTACCGTCGGCGGGCC
GCTGGTGACGCAACCCCACTCAGCGGCGTTGCTGAACGTTAGCGCCATGT
CGCACGGCGCGCTCAGCAACAACGCCATCCTCGCGCTCAGCGGGTAAGAA
GGATATGAGTGGATCTCTCACAGCATGTTCCCCGTCGAGCTCTCCGAGGT
CGAGCTGAGGTCTACCGTCGGCGGGCCGCTGGTGACGCAACCCCACTCAG
CGGCGTTGCTGAACGTTAGCGCCATGTCGCACGGCGCGCTCAGCAACAAC
GCCATCCTCGCGCTCAGCGGGTAA
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