mRNA_H-elongata_contig133359.2371.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133359.2371.1
Unique NamemRNA_H-elongata_contig133359.2371.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig133359.2371.1 vs. uniprot
Match: D8LIF0_ECTSI (NAD(+) kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIF0_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.250e-38
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 ALDDLRDGIDFSRELEVFIPPDRSREAQMGPKGGKGPSPPPEEGDSESVDFVLTLGGDGLLMYSNTLFRRSVPPHLCFNLGSMGFLAPFEYERMKEEV 294
            ALD+  +G   + +LEVF PP+RS  A+MGP+GG GP+PP    D + VDFVLTLGGDGLLMYSNTLFRRSVPPHLCFNLGSMGFL+PFEYE MKEEV
Sbjct:  276 ALDEFTEGA--AGKLEVFTPPERSVVAEMGPRGGAGPAPPL---DGDRVDFVLTLGGDGLLMYSNTLFRRSVPPHLCFNLGSMGFLSPFEYESMKEEV 368
[Close]
BLAST of mRNA_H-elongata_contig133359.2371.1 vs. uniprot
Match: A0A7S4DFR2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFR2_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 6.380e-15
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:  139 ESVDFVLTLGGDGLLMYSNTLFRRSVPPHLCFNLGSMGFLAPFEYERMKEEV 294
            + VDF +T+GGDGLLMY+N+LF  + PP LCFN+GS+GFL PF Y+  K EV
Sbjct:  263 QPVDFAVTMGGDGLLMYANSLFPEAAPPVLCFNMGSLGFLTPFSYQDFKFEV 314
[Close]
BLAST of mRNA_H-elongata_contig133359.2371.1 vs. uniprot
Match: M2Y8C7_GALSU (NAD+ kinase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y8C7_GALSU)

HSP 1 Score: 76.6 bits (187), Expect = 3.150e-14
Identity = 28/50 (56.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:  145 VDFVLTLGGDGLLMYSNTLFRRSVPPHLCFNLGSMGFLAPFEYERMKEEV 294
            VDFV+ LGGDG++++++TLF+ ++PP +CFNLGS+GFL PFE++  +EE+
Sbjct:  499 VDFVICLGGDGIILHASTLFKTAMPPVVCFNLGSLGFLTPFEFDSFEEEI 548
[Close]
BLAST of mRNA_H-elongata_contig133359.2371.1 vs. uniprot
Match: A0A7R8W3K0_9CRUS (NAD(+) kinase n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8W3K0_9CRUS)

HSP 1 Score: 74.3 bits (181), Expect = 7.900e-14
Identity = 29/57 (50.88%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:  124 EEGDSESVDFVLTLGGDGLLMYSNTLFRRSVPPHLCFNLGSMGFLAPFEYERMKEEV 294
            E+  ++ +DF++ LGGDG L+Y+++LF++SVPP + F+LGS+GFLAPFE++  + EV
Sbjct:  189 EDDLTDRIDFIICLGGDGTLLYASSLFQQSVPPIMAFHLGSLGFLAPFEFDGFRAEV 245
[Close]
BLAST of mRNA_H-elongata_contig133359.2371.1 vs. uniprot
Match: A0A7R8W2F7_9CRUS (NAD(+) kinase n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8W2F7_9CRUS)

HSP 1 Score: 74.3 bits (181), Expect = 2.010e-13
Identity = 29/57 (50.88%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:  124 EEGDSESVDFVLTLGGDGLLMYSNTLFRRSVPPHLCFNLGSMGFLAPFEYERMKEEV 294
            E+  ++ +DF++ LGGDG L+Y+++LF++SVPP + F+LGS+GFLAPFE++  + EV
Sbjct:  189 EDDLTDRIDFIICLGGDGTLLYASSLFQQSVPPIMAFHLGSLGFLAPFEFDGFRAEV 245
[Close]
BLAST of mRNA_H-elongata_contig133359.2371.1 vs. uniprot
Match: UPI0010FAE31D (NAD kinase n=1 Tax=Protobothrops mucrosquamatus TaxID=103944 RepID=UPI0010FAE31D)

HSP 1 Score: 73.6 bits (179), Expect = 3.380e-13
Identity = 29/53 (54.72%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:  136 SESVDFVLTLGGDGLLMYSNTLFRRSVPPHLCFNLGSMGFLAPFEYERMKEEV 294
            S+ +DF++ LGGDG L+Y+++LF RSVPP + F+LGS+GFL PF +E +  EV
Sbjct:  207 SDQIDFIICLGGDGTLLYASSLFPRSVPPVMAFHLGSLGFLTPFNFENVLNEV 259
[Close]
BLAST of mRNA_H-elongata_contig133359.2371.1 vs. uniprot
Match: A0A2V3J0X2_9FLOR (NAD kinase 2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0X2_9FLOR)

HSP 1 Score: 73.6 bits (179), Expect = 3.800e-13
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:  139 ESVDFVLTLGGDGLLMYSNTLFRRSVPPHLCFNLGSMGFLAPFEYERMKEEV 294
            + VDFV+ LGGDGL+++ +TLFR +VPP + FNLGS+GFL PF++E  + E+
Sbjct:  441 QKVDFVICLGGDGLILHVSTLFRTAVPPVISFNLGSLGFLTPFQFEDFRTEI 492
[Close]
BLAST of mRNA_H-elongata_contig133359.2371.1 vs. uniprot
Match: K0KL40_WICCF (Putative inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Wickerhamomyces ciferrii (strain ATCC 14091 / BCRC 22168 / CBS 111 / JCM 3599 / NBRC 0793 / NRRL Y-1031 F-60-10) TaxID=1206466 RepID=K0KL40_WICCF)

HSP 1 Score: 73.2 bits (178), Expect = 4.990e-13
Identity = 29/54 (53.70%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:  133 DSESVDFVLTLGGDGLLMYSNTLFRRSVPPHLCFNLGSMGFLAPFEYERMKEEV 294
            +SE +D V+TLGGDG ++Y+++LF+RSVPP + F+LGS+GFL  F+YE  +E +
Sbjct:  148 NSELIDLVITLGGDGTVLYTSSLFQRSVPPVMSFSLGSLGFLTTFQYEEFRETL 201
[Close]
BLAST of mRNA_H-elongata_contig133359.2371.1 vs. uniprot
Match: R7QCX7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCX7_CHOCR)

HSP 1 Score: 73.2 bits (178), Expect = 5.190e-13
Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  139 ESVDFVLTLGGDGLLMYSNTLFRRSVPPHLCFNLGSMGFLAPFEYERMKEEV 294
            E VDFV+ LGGDGL+++ ++LF+++VPP + FNLGS+GFL PF+Y+  + EV
Sbjct:  463 EIVDFVVCLGGDGLILHVSSLFKQAVPPVISFNLGSLGFLTPFQYDHFRTEV 514
[Close]
BLAST of mRNA_H-elongata_contig133359.2371.1 vs. uniprot
Match: A0A6P7S5A7_OCTVU (NAD(+) kinase n=3 Tax=Octopus TaxID=6643 RepID=A0A6P7S5A7_OCTVU)

HSP 1 Score: 72.4 bits (176), Expect = 7.400e-13
Identity = 28/53 (52.83%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:  136 SESVDFVLTLGGDGLLMYSNTLFRRSVPPHLCFNLGSMGFLAPFEYERMKEEV 294
            ++ +D V+ LGGDG LMY+ +LF++SVPP + F+LGS+GFLAPF++   KE++
Sbjct:   95 TDRIDLVICLGGDGTLMYAASLFQQSVPPVMSFHLGSLGFLAPFQFREFKEDI 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133359.2371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIF0_ECTSI1.250e-3872.45NAD(+) kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A7S4DFR2_HETAK6.380e-1561.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
M2Y8C7_GALSU3.150e-1456.00NAD+ kinase n=1 Tax=Galdieria sulphuraria TaxID=13... [more]
A0A7R8W3K0_9CRUS7.900e-1450.88NAD(+) kinase n=1 Tax=Cyprideis torosa TaxID=16371... [more]
A0A7R8W2F7_9CRUS2.010e-1350.88NAD(+) kinase n=1 Tax=Cyprideis torosa TaxID=16371... [more]
UPI0010FAE31D3.380e-1354.72NAD kinase n=1 Tax=Protobothrops mucrosquamatus Ta... [more]
A0A2V3J0X2_9FLOR3.800e-1355.77NAD kinase 2, chloroplastic n=1 Tax=Gracilariopsis... [more]
K0KL40_WICCF4.990e-1353.70Putative inorganic polyphosphate/ATP-NAD kinase n=... [more]
R7QCX7_CHOCR5.190e-1355.77Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A6P7S5A7_OCTVU7.400e-1352.83NAD(+) kinase n=3 Tax=Octopus TaxID=6643 RepID=A0A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133359contigH-elongata_contig133359:197..1413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue4.7e-32
Seed eggNOG ortholog2880.D8LIF0
KEGG rclassRC00002,RC00078
KEGG koko:K00858
KEGG ReactionR00104
KEGG Pathwayko00760,ko01100,map00760,map01100
EggNOG free text desc.NADP biosynthetic process
EggNOG OGsCOG0061@1,KOG2178@2759
EC2.7.1.23
COG Functional cat.G
BiGG ReactioniRC1080.CRv4_Au5_s7_g13893_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNAD( ) kinase
Ec32 orthologEc-18_003910.1
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.3306358-CDS-H-elongata_contig133359:196..4031622929791.3306358-CDS-H-elongata_contig133359:196..403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133359 197..403 +
1691679159.0124063-CDS-H-elongata_contig133359:196..4031691679159.0124063-CDS-H-elongata_contig133359:196..403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133359 197..403 +
1622929791.347081-CDS-H-elongata_contig133359:1326..14131622929791.347081-CDS-H-elongata_contig133359:1326..1413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133359 1327..1413 +
1691679159.0237825-CDS-H-elongata_contig133359:1326..14131691679159.0237825-CDS-H-elongata_contig133359:1326..1413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133359 1327..1413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133359.2371.1prot_H-elongata_contig133359.2371.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133359 197..1413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133359.2371.1

>prot_H-elongata_contig133359.2371.1 ID=prot_H-elongata_contig133359.2371.1|Name=mRNA_H-elongata_contig133359.2371.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
ALDDLRDGIDFSRELEVFIPPDRSREAQMGPKGGKGPSPPPEEGDSESVD
FVLTLGGDGLLMYSNTLFRRSVPPHLCFNLGSMGFLAPFEYERMKEEV
back to top

mRNA from alignment at H-elongata_contig133359:197..1413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133359.2371.1 ID=mRNA_H-elongata_contig133359.2371.1|Name=mRNA_H-elongata_contig133359.2371.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1217bp|location=Sequence derived from alignment at H-elongata_contig133359:197..1413+ (Himanthalia elongata Himel1 dioecious)
GCGCTGGATGATCTAAGGGACGGAATCGACTTCAGCCGCGAGCTGGAGGT
GTTCATTCCCCCCGACAGGTCTCGCGAAGCACAAATGGGGCCCAAAGGAG
GCAAGGGGCCCTCACCCCCCCCCGAGGAAGGCGACAGCGAGAGCGTGGAT
TTTGTCCTCACTCTCGGGGGCGACGGCCTCCTCATGTACAGCAACACCCT
CTTCCGCGTGAGTTGAGGTGTTTCGTCTCGTTTTTGTTGCTGCACGAGAG
ACGGAGCGGTGTTTGGCAGGGCAAGCGGAGGCAAGTTTCGCCGCCTCGTC
CGTGTCGGCGCCCCCAGTCCTCGTCTATTCGCACCCGCGTTTTCCCTGCC
ATTTTGACGCAGCCCTCCCTCTTACCACCCCCTACTCCACTCCTCCTCCC
CGAATGCTCGGCGATTGACATGGCAACTTTTTTACCACTCAGTCGAGAAT
TCTTCGTGTATGTATGAATGTATGTATGTATATATGTATGCATCTATATA
TCTATGTATATTTATGAAATTGCACATAACCGCGCAATCCGGCCCTGTCG
ACCTAATCATTCGATGCCACTCGTATGTTTGTATGTATGCATGTATATTT
ATTAAATTGCACATAACCTGAATGTATGTATATGTATGTACGTGTAGTGA
TCACATATAGCAGAGTAAGATCAACCGGATTTGGTTGCCTCGTGCTCTTG
TAAACTCGCGCCAGTGATAGCGCTATCACCCTACCCTCTATCAATATAAC
CAACCGTAGCGTCAATTTATCAGTACATGATCAATTCTCGAAAACCTGTA
TGCAGACAGGCAAGGCAGGCAGAAGTACCGCCTCGGATATCCATCCCTCA
TACACACTCACGGATTCAAGACAACGTTTATGCTGGTTGTCCGGATTGCT
TTGCGATTTATAGCACCGTCGTTTCTTTTGGTTTGCCGAGAGCGGCCGTC
GCCGGCGACCTCCGCGATGAAACCTTACACCTGTTAACACCGCCCGCCGA
TGATCTGCGCCCCCATTACACCGATTCCGCACTCCCCGCTCCCTGTCGCT
CGCTCCCAAACGCCTTCACGGTACGAACTCCTTCGCTGGTCTCCGTTGGT
GGGCTGTTGTTCGGCTGACGTGGGCGATAGAGATCCGTCCCCCCACATCT
CTGCTTTAACCTGGGCTCTATGGGGTTCCTGGCACCTTTCGAATACGAAC
GGATGAAGGAAGAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig133359:197..1413+

>mRNA_H-elongata_contig133359.2371.1 ID=mRNA_H-elongata_contig133359.2371.1|Name=mRNA_H-elongata_contig133359.2371.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig133359:197..1413+ (Himanthalia elongata Himel1 dioecious)
GCGCTGGATGATCTAAGGGACGGAATCGACTTCAGCCGCGAGCTGGAGGT
GTTCATTCCCCCCGACAGGTCTCGCGAAGCACAAATGGGGCCCAAAGGAG
GCAAGGGGCCCTCACCCCCCCCCGAGGAAGGCGACAGCGAGAGCGTGGAT
TTTGTCCTCACTCTCGGGGGCGACGGCCTCCTCATGTACAGCAACACCCT
CTTCCGCGCGCTGGATGATCTAAGGGACGGAATCGACTTCAGCCGCGAGC
TGGAGGTGTTCATTCCCCCCGACAGGTCTCGCGAAGCACAAATGGGGCCC
AAAGGAGGCAAGGGGCCCTCACCCCCCCCCGAGGAAGGCGACAGCGAGAG
CGTGGATTTTGTCCTCACTCTCGGGGGCGACGGCCTCCTCATGTACAGCA
ACACCCTCTTCCGCAGATCCGTCCCCCCACATCTCTGCTTTAACCTGGGC
TCTATGGGGTTCCTGGCACCTTTCGAATACGAACGGATGAAGGAAGAGGT
GAGATCCGTCCCCCCACATCTCTGCTTTAACCTGGGCTCTATGGGGTTCC
TGGCACCTTTCGAATACGAACGGATGAAGGAAGAGGTG
back to top