mRNA_H-elongata_contig133345.2370.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133345.2370.1
Unique NamemRNA_H-elongata_contig133345.2370.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig133345.2370.1 vs. uniprot
Match: A0A6H5KBF3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF3_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.470e-23
Identity = 56/134 (41.79%), Postives = 82/134 (61.19%), Query Frame = 1
Query:    1 DVIKLQETKRDGHSEITASGYRVYLSGDCSGLKREKGQHGVGLAIKEEIVKKAGKDDIAIECISTRLLKARISI-KSNFITLVVTYAPTEEA-------TEEKAKYVAALNSTVSSVPAREYVFILTDANARTG 378
            DVI+LQET+R+G   I   GY +  SG  +G K +KG H VG+AIKE + +  G++   +ECIS RL+K R+ I ++  +T VV YAPTE            K  +  AL++ +  V +R+++ +L DANARTG
Sbjct:   13 DVIRLQETRREGQGSIAHDGYVIIWSGARAGTKDKKGVHRVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFSTALDAAIREVHSRDHLVVLMDANARTG 146          
BLAST of mRNA_H-elongata_contig133345.2370.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.600e-22
Identity = 57/134 (42.54%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 DVIKLQETKRDGHSEITASGYRVYLSGDCSGLKREKGQHGVGLAIKEEIVKKAGKDDIAIECISTRLLKARISI-KSNFITLVVTYAPTEEA-------TEEKAKYVAALNSTVSSVPAREYVFILTDANARTG 378
            DVI+LQET+R+G   I   GY +  SG  +G K ++G HGVG+AIKE + +  G++   +ECIS RL+KAR+ I ++  +T VV YAPTE            K  +  AL++ +  V +R+++ +L DANARTG
Sbjct:   13 DVIELQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDANARTG 146          
BLAST of mRNA_H-elongata_contig133345.2370.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.010e-15
Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = 1
Query:    7 IKLQETKRDGHSEITASGYRVYLSGDCSGLKREKGQHGVGLAIKEEIVKKAGKDDIAIECISTRLLKARISIKSN--FITLVVTYAPTEEAT-EEKAKYVAALNSTVSSVPAREYVFILTDANARTG 378
            + LQE +R G +E  ASG+RV+  G   G     G HGVG+A++E + K +       E +  RL+  R  +  +   +T V  YAPT+ AT E K  +   L+S V  +PA+EY+F+L DANA+TG
Sbjct:  342 VGLQEVRRPGRTEFAASGFRVFTCGTDKG-----GTHGVGIAVEETLCKSS---QYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRIPAKEYLFVLMDANAQTG 460          
BLAST of mRNA_H-elongata_contig133345.2370.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.190e-15
Identity = 49/127 (38.58%), Postives = 73/127 (57.48%), Query Frame = 1
Query:    7 IKLQETKRDGHSEITASGYRVYLSGDCSGLKREKGQHGVGLAIKEEIVKKAGKDDIAIECISTRLLKARISIKSN--FITLVVTYAPTEEAT-EEKAKYVAALNSTVSSVPAREYVFILTDANARTG 378
            + LQE +R G +E TASG+RV+  G   G     G HGVG+A++E + K +       E +  RL+  R  +  +   +  V  YAPT+ AT + K  +   L+S V  +PA+EY+F+L DANA+TG
Sbjct:   80 VGLQEVRRPGRTEFTASGFRVFTCGTDKG-----GTHGVGIAVEEALCKAS---QYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKEYLFVLMDANAQTG 198          
BLAST of mRNA_H-elongata_contig133345.2370.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.220e-15
Identity = 50/127 (39.37%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    7 IKLQETKRDGHSEITASGYRVYLSGDCSGLKREKGQHGVGLAIKEEIVKKAGKDDIAIECISTRLLKARISIKSN--FITLVVTYAPTEEAT-EEKAKYVAALNSTVSSVPAREYVFILTDANARTG 378
            + LQE +R G +E  ASG+RV+  G   G     G HGVG+A++E + K +       E +  RL+  R  +  +   +T V  YAPT+ AT E K  +   L+S V   PA+EY+F+L DANA+TG
Sbjct:  110 VGLQEVRRPGRTEFAASGFRVFTCGTDKG-----GTHGVGIAVEETLCKSS---QYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG 228          
BLAST of mRNA_H-elongata_contig133345.2370.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.540e-15
Identity = 50/127 (39.37%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    7 IKLQETKRDGHSEITASGYRVYLSGDCSGLKREKGQHGVGLAIKEEIVKKAGKDDIAIECISTRLLKARISIKSN--FITLVVTYAPTEEAT-EEKAKYVAALNSTVSSVPAREYVFILTDANARTG 378
            + LQE +R G +E  ASG+RV+  G   G     G HGVG+A++E + K +       E +  RL+  R  +  +   +T V  YAPT+ AT E K  +   L+S V   PA+EY+F+L DANA+TG
Sbjct:   55 VGLQEVRRPGRTEFAASGFRVFTCGTDKG-----GTHGVGIAVEETLCKSS---QYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG 173          
BLAST of mRNA_H-elongata_contig133345.2370.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.690e-15
Identity = 50/127 (39.37%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    7 IKLQETKRDGHSEITASGYRVYLSGDCSGLKREKGQHGVGLAIKEEIVKKAGKDDIAIECISTRLLKARISIKSN--FITLVVTYAPTEEAT-EEKAKYVAALNSTVSSVPAREYVFILTDANARTG 378
            + LQE +R G +E  ASG+RV+  G   G     G HGVG+A++E + K +       E +  RL+  R  +  +   +T V  YAPT+ AT E K  +   L+S V   PA+EY+F+L DANA+TG
Sbjct:  546 VGLQEVRRPGRTEFAASGFRVFTCGTDKG-----GTHGVGIAVEETLCKSS---QYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG 664          
BLAST of mRNA_H-elongata_contig133345.2370.1 vs. uniprot
Match: A0A6H5L3X5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X5_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.430e-14
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    7 IKLQETKRDGHSEITASGYRVYLSGDCSGLKREKGQHGVGLAIKEEIVKKAGKDDIAIECISTRLLKARISIKSN--FITLVVTYAPTEEAT-EEKAKYVAALNSTVSSVPAREYVFILTDANARTG 378
            + LQE +R G +E TASG+RV+  G   G     G HGVG+A++E + K +       E +  RL+  R  +  +   +  V  YAPT+ AT + K  +   L+S V  +PA+E VF+L DANA+TG
Sbjct:  141 VGLQEVRRPGRTEFTASGFRVFTCGTDKG-----GTHGVGIAVEEALCKAS---QYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKECVFVLMDANAQTG 259          
BLAST of mRNA_H-elongata_contig133345.2370.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.170e-13
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:    4 VIKLQETKRDGHSEITASGYRVYLSGDCSGLKREKGQHGVGLAIKEEIVKKAGKDDIAIECISTRLLKARISIKSN--FITLVVTYAPTEEAT-EEKAKYVAALNSTVSSVPAREYVFILTDANARTG 378
            V+ +QET+R G +E  A+G+RV+  G  +G     G HGVG+A+KE + K +       E I  RL+  R+ +  +   +  V   APTE +T   K  +   L+S V  +P++E V++L DANARTG
Sbjct:   93 VVGMQETRRAGRTEFAAAGFRVFCCGTETG-----GVHGVGIAVKESLCKTS---TFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTG 212          
BLAST of mRNA_H-elongata_contig133345.2370.1 vs. uniprot
Match: A0A6H5K3U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3U7_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.730e-13
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    7 IKLQETKRDGHSEITASGYRVYLSGDCSGLKREKGQHGVGLAIKEEIVKKAGKDDIAIECISTRLLKARISIKSN--FITLVVTYAPTEEAT-EEKAKYVAALNSTVSSVPAREYVFILTDANARTG 378
            + LQE ++ G +E TASG+RV+  G   G     G HGVG+ ++E + K +      +E +  RL+  R  +  +   +  V  +APT+ AT + K  +   L+S V  VPA+E +F+L DANA+TG
Sbjct:   19 VGLQEVRKPGRTEFTASGFRVFTCGTDKG-----GTHGVGITVEEALCKAS---QYTMEYVDERLMAMRFEMTGHRGAVNFVAAHAPTDVATADSKRMFWEKLDSLVRRVPAKECLFVLMDANAQTG 137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133345.2370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBF3_9PHAE4.470e-2341.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUT2_9PHAE2.600e-2242.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K319_9PHAE3.010e-1539.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9G5_9PHAE7.190e-1538.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQZ7_9PHAE7.220e-1539.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7U5_9PHAE7.540e-1539.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM6_9PHAE7.690e-1539.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L3X5_9PHAE2.430e-1438.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBD7_9PHAE4.170e-1337.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K3U7_9PHAE4.730e-1336.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133345contigH-elongata_contig133345:252..629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score62.8
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog13616.ENSMODP00000033995
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs39VM0@33154,3BPUP@33208,3D6HY@33213,3JJKA@40674,48CXU@7711,4992I@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.2831023-CDS-H-elongata_contig133345:251..6291622929791.2831023-CDS-H-elongata_contig133345:251..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133345 252..629 +
1691679159.0016372-CDS-H-elongata_contig133345:251..6291691679159.0016372-CDS-H-elongata_contig133345:251..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133345 252..629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133345.2370.1prot_H-elongata_contig133345.2370.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133345 252..629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133345.2370.1

>prot_H-elongata_contig133345.2370.1 ID=prot_H-elongata_contig133345.2370.1|Name=mRNA_H-elongata_contig133345.2370.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
DVIKLQETKRDGHSEITASGYRVYLSGDCSGLKREKGQHGVGLAIKEEIV
KKAGKDDIAIECISTRLLKARISIKSNFITLVVTYAPTEEATEEKAKYVA
ALNSTVSSVPAREYVFILTDANARTG
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mRNA from alignment at H-elongata_contig133345:252..629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133345.2370.1 ID=mRNA_H-elongata_contig133345.2370.1|Name=mRNA_H-elongata_contig133345.2370.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=378bp|location=Sequence derived from alignment at H-elongata_contig133345:252..629+ (Himanthalia elongata Himel1 dioecious)
GATGTTATTAAACTACAGGAGACAAAACGGGACGGACATTCTGAAATAAC TGCATCTGGATACCGGGTCTATTTAAGTGGTGATTGCAGCGGGCTAAAAA GGGAAAAGGGGCAACATGGGGTGGGACTAGCGATAAAGGAGGAGATCGTT AAAAAGGCCGGCAAGGACGACATCGCAATCGAGTGCATCAGCACACGTCT TCTGAAGGCTCGAATATCGATTAAATCTAATTTTATTACGCTTGTGGTAA CCTACGCTCCGACCGAGGAAGCGACGGAGGAGAAGGCCAAGTATGTCGCA GCCCTCAACAGCACCGTATCATCAGTGCCCGCTCGGGAATACGTCTTCAT TTTGACCGACGCGAATGCCAGGACAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig133345:252..629+

>mRNA_H-elongata_contig133345.2370.1 ID=mRNA_H-elongata_contig133345.2370.1|Name=mRNA_H-elongata_contig133345.2370.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig133345:252..629+ (Himanthalia elongata Himel1 dioecious)
GATGTTATTAAACTACAGGAGACAAAACGGGACGGACATTCTGAAATAAC
TGCATCTGGATACCGGGTCTATTTAAGTGGTGATTGCAGCGGGCTAAAAA
GGGAAAAGGGGCAACATGGGGTGGGACTAGCGATAAAGGAGGAGATCGTT
AAAAAGGCCGGCAAGGACGACATCGCAATCGAGTGCATCAGCACACGTCT
TCTGAAGGCTCGAATATCGATTAAATCTAATTTTATTACGCTTGTGGTAA
CCTACGCTCCGACCGAGGAAGCGACGGAGGAGAAGGCCAAGTATGTCGCA
GCCCTCAACAGCACCGTATCATCAGTGCCCGCTCGGGAATACGTCTTCAT
TTTGACCGACGCGAATGCCAGGACAGGAGATGTTATTAAACTACAGGAGA
CAAAACGGGACGGACATTCTGAAATAACTGCATCTGGATACCGGGTCTAT
TTAAGTGGTGATTGCAGCGGGCTAAAAAGGGAAAAGGGGCAACATGGGGT
GGGACTAGCGATAAAGGAGGAGATCGTTAAAAAGGCCGGCAAGGACGACA
TCGCAATCGAGTGCATCAGCACACGTCTTCTGAAGGCTCGAATATCGATT
AAATCTAATTTTATTACGCTTGTGGTAACCTACGCTCCGACCGAGGAAGC
GACGGAGGAGAAGGCCAAGTATGTCGCAGCCCTCAACAGCACCGTATCAT
CAGTGCCCGCTCGGGAATACGTCTTCATTTTGACCGACGCGAATGCCAGG
ACAGGA
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