prot_H-elongata_contig13334.2369.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13334.2369.1
Unique Nameprot_H-elongata_contig13334.2369.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length287
Homology
BLAST of mRNA_H-elongata_contig13334.2369.1 vs. uniprot
Match: D8LM25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM25_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 2.660e-75
Identity = 136/167 (81.44%), Postives = 147/167 (88.02%), Query Frame = 0
Query:    1 RNLQSTLAAERKKVILYCRREAIKRRTKDIAEGAKEARNMNKHKSDGMQNVSKNMFNDIEENVSSVDSDDERLEGWKPPTASGIDNSNALSTYEDIASGNVHKKLAQGTFGAEEVGTNG-LKTSGSRAMDAYRMKQTGATATFDPTRGGAQVKMGKFTVQPPPGAPP 166
            RNL STLAAERKKVILYCRREA KRRTKDIA GAKEAR MN HKSDGMQNVSKNMF D +++ S +DS+D+RLEGWKPPTA G+DNS ALS+YEDIASGNVHKKLA GTFGAEE G +G LKTSGSRAMDAYRMKQTGATATFDPTRGGA+V MG F  +PPPG PP
Sbjct:  218 RNLVSTLAAERKKVILYCRREATKRRTKDIAAGAKEARTMNAHKSDGMQNVSKNMFKDSDDSQSDIDSEDDRLEGWKPPTACGVDNSKALSSYEDIASGNVHKKLADGTFGAEEGGADGGLKTSGSRAMDAYRMKQTGATATFDPTRGGAKVNMGGFAQKPPPGVPP 384          
BLAST of mRNA_H-elongata_contig13334.2369.1 vs. uniprot
Match: A0A6H5KND4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND4_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 5.880e-61
Identity = 117/158 (74.05%), Postives = 129/158 (81.65%), Query Frame = 0
Query:   20 REAIKRRTKDIAEGAKEARNMNKHKSDGMQNVSKNMFNDIEENVSSVDSDDERLEGWKPPTASGIDNSNALSTYEDIASGNV----------HKKLAQGTFGAEEVGTNG-LKTSGSRAMDAYRMKQTGATATFDPTRGGAQVKMGKFTVQPPPGAPP 166
            REA KRRTKDIA GAKEAR +N HKSDGMQNVSKNMF D +++ S +DS+D+RLEGWKPPTA G+DNS ALS+YEDIASGNV          HKKLA GTFGAEE G +G LKTSGSRAMDAYRMKQTGATATFDPTRGGA+V MG F  +PPPG PP
Sbjct:  209 REATKRRTKDIAAGAKEARKLNAHKSDGMQNVSKNMFKDSDDSQSDIDSEDDRLEGWKPPTACGVDNSKALSSYEDIASGNVRTSPGAANQVHKKLADGTFGAEEGGVDGGLKTSGSRAMDAYRMKQTGATATFDPTRGGAKVNMGGFAQKPPPGVPP 366          
BLAST of mRNA_H-elongata_contig13334.2369.1 vs. uniprot
Match: A0A835Z9J4_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9J4_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.770e-20
Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = 0
Query:   29 DIAEGAKEARNMNKHKSDGMQNVSKNMFNDIEENVSSVDSD-DERLEGWKPPTASGIDNSNALSTYEDIASGNVHKKLAQGTFGAEEVGTNGLKTSGSRAMDAYRMKQTGATATFDPTRGGAQVKMGKFTV 158
            D+A  A+E R + +HKSDG++NVS+N      ++  S D   DERLEGW+ P  +G+ NS A+ +  D+ +G  H  L      +   G+  ++T+GSRAMDAYR+ Q+GA    DPTRGGA V+M   +V
Sbjct:  526 DVAAAARERRKLGQHKSDGLKNVSRNFAGSGSDDDDSYDEKKDERLEGWQAPAHAGVHNSQAIVSAHDVRAGTAHAALRAAAAASASAGSV-IETTGSRAMDAYRLMQSGAREAVDPTRGGAAVRMAASSV 655          
BLAST of mRNA_H-elongata_contig13334.2369.1 vs. uniprot
Match: A0A836CAU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.630e-17
Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = 0
Query:   10 ERKKVILYCRREAIKRRTKDIAEGAKEARNMNKHKSDGMQNVSKNMFNDIEENVSSVDSDDERLEGWKPPTASGIDNSNALSTYEDIASGNVHKKL------------AQGTFGAEEVGTNGLKTSGSRAMDAYRM 133
            ERKKVI+YCRR A+KR T+DI E A E R +   KSDGM+N+S+NM    +++ S  DS+ + ++ W  PT SG  NS A++ YED+ +G ++ +L            A  T+   E  T G KTSGSR  DA+R+
Sbjct:  276 ERKKVIMYCRRAALKRMTRDIKEEADEDRRIMAQKSDGMKNLSRNMVKAPDDSDSDEDSEGQAID-WIAPTTSGTTNSEAIAKYEDLKTGKIYTELEEMKRRGIKVEGAVATYTVVEA-TIGEKTSGSRLNDAFRI 409          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13334.2369.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LM25_ECTSI2.660e-7581.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KND4_9PHAE5.880e-6174.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z9J4_9STRA1.770e-2042.75SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CAU2_9STRA3.630e-1743.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13334contigH-elongata_contig13334:3807..7330 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13334.2369.1mRNA_H-elongata_contig13334.2369.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13334 3807..7330 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13334.2369.1 ID=prot_H-elongata_contig13334.2369.1|Name=mRNA_H-elongata_contig13334.2369.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=287bp
RNLQSTLAAERKKVILYCRREAIKRRTKDIAEGAKEARNMNKHKSDGMQN
VSKNMFNDIEENVSSVDSDDERLEGWKPPTASGIDNSNALSTYEDIASGN
VHKKLAQGTFGAEEVGTNGLKTSGSRAMDAYRMKQTGATATFDPTRGGAQ
VKMGKFTVQPPPGAPPLATALGLGTHAKSLKAKSDEDDDEDDDDDEDIKD
DLDGDGDNNDGEEENSENSDDDKPVGRTKGLHDAAKSPQLLDRAPCPSLK
SIGNPFQVRGFPGPPSGPLPSPFPVGGFGSSLGGPPG
back to top