mRNA_H-elongata_contig13334.2369.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13334.2369.1
Unique NamemRNA_H-elongata_contig13334.2369.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig13334.2369.1 vs. uniprot
Match: D8LM25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM25_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 2.660e-75
Identity = 136/167 (81.44%), Postives = 147/167 (88.02%), Query Frame = 1 
Query:    1 RNLQSTLAAERKKVILYCRREAIKRRTKDIAEGAKEARNMNKHKSDGMQNVSKNMFNDIEENVSSVDSDDERLEGWKPPTASGIDNSNALSTYEDIASGNVHKKLAQGTFGAEEVGTNG-LKTSGSRAMDAYRMKQTGATATFDPTRGGAQVKMGKFTVQPPPGAPP 498
            RNL STLAAERKKVILYCRREA KRRTKDIA GAKEAR MN HKSDGMQNVSKNMF D +++ S +DS+D+RLEGWKPPTA G+DNS ALS+YEDIASGNVHKKLA GTFGAEE G +G LKTSGSRAMDAYRMKQTGATATFDPTRGGA+V MG F  +PPPG PP
Sbjct:  218 RNLVSTLAAERKKVILYCRREATKRRTKDIAAGAKEARTMNAHKSDGMQNVSKNMFKDSDDSQSDIDSEDDRLEGWKPPTACGVDNSKALSSYEDIASGNVHKKLADGTFGAEEGGADGGLKTSGSRAMDAYRMKQTGATATFDPTRGGAKVNMGGFAQKPPPGVPP 384
[Close]
BLAST of mRNA_H-elongata_contig13334.2369.1 vs. uniprot
Match: A0A6H5KND4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND4_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 5.880e-61
Identity = 117/158 (74.05%), Postives = 129/158 (81.65%), Query Frame = 1 
Query:   58 REAIKRRTKDIAEGAKEARNMNKHKSDGMQNVSKNMFNDIEENVSSVDSDDERLEGWKPPTASGIDNSNALSTYEDIASGNV----------HKKLAQGTFGAEEVGTNG-LKTSGSRAMDAYRMKQTGATATFDPTRGGAQVKMGKFTVQPPPGAPP 498
            REA KRRTKDIA GAKEAR +N HKSDGMQNVSKNMF D +++ S +DS+D+RLEGWKPPTA G+DNS ALS+YEDIASGNV          HKKLA GTFGAEE G +G LKTSGSRAMDAYRMKQTGATATFDPTRGGA+V MG F  +PPPG PP
Sbjct:  209 REATKRRTKDIAAGAKEARKLNAHKSDGMQNVSKNMFKDSDDSQSDIDSEDDRLEGWKPPTACGVDNSKALSSYEDIASGNVRTSPGAANQVHKKLADGTFGAEEGGVDGGLKTSGSRAMDAYRMKQTGATATFDPTRGGAKVNMGGFAQKPPPGVPP 366
[Close]
BLAST of mRNA_H-elongata_contig13334.2369.1 vs. uniprot
Match: A0A835Z9J4_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9J4_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.770e-20
Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = 1 
Query:   85 DIAEGAKEARNMNKHKSDGMQNVSKNMFNDIEENVSSVDSD-DERLEGWKPPTASGIDNSNALSTYEDIASGNVHKKLAQGTFGAEEVGTNGLKTSGSRAMDAYRMKQTGATATFDPTRGGAQVKMGKFTV 474
            D+A  A+E R + +HKSDG++NVS+N      ++  S D   DERLEGW+ P  +G+ NS A+ +  D+ +G  H  L      +   G+  ++T+GSRAMDAYR+ Q+GA    DPTRGGA V+M   +V
Sbjct:  526 DVAAAARERRKLGQHKSDGLKNVSRNFAGSGSDDDDSYDEKKDERLEGWQAPAHAGVHNSQAIVSAHDVRAGTAHAALRAAAAASASAGSV-IETTGSRAMDAYRLMQSGAREAVDPTRGGAAVRMAASSV 655
[Close]
BLAST of mRNA_H-elongata_contig13334.2369.1 vs. uniprot
Match: A0A836CAU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.630e-17
Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = 1 
Query:   28 ERKKVILYCRREAIKRRTKDIAEGAKEARNMNKHKSDGMQNVSKNMFNDIEENVSSVDSDDERLEGWKPPTASGIDNSNALSTYEDIASGNVHKKL------------AQGTFGAEEVGTNGLKTSGSRAMDAYRM 399
            ERKKVI+YCRR A+KR T+DI E A E R +   KSDGM+N+S+NM    +++ S  DS+ + ++ W  PT SG  NS A++ YED+ +G ++ +L            A  T+   E  T G KTSGSR  DA+R+
Sbjct:  276 ERKKVIMYCRRAALKRMTRDIKEEADEDRRIMAQKSDGMKNLSRNMVKAPDDSDSDEDSEGQAID-WIAPTTSGTTNSEAIAKYEDLKTGKIYTELEEMKRRGIKVEGAVATYTVVEA-TIGEKTSGSRLNDAFRI 409
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13334.2369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LM25_ECTSI2.660e-7581.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KND4_9PHAE5.880e-6174.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z9J4_9STRA1.770e-2042.75SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CAU2_9STRA3.630e-1743.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13334contigH-elongata_contig13334:3807..7330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_002630.1
Exons5
Model size861
Cds size861
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13334.2369.1prot_H-elongata_contig13334.2369.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13334 3807..7330 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.145819-CDS-H-elongata_contig13334:3806..41331622929791.145819-CDS-H-elongata_contig13334:3806..4133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13334 3807..4133 -
1691679158.9448483-CDS-H-elongata_contig13334:3806..41331691679158.9448483-CDS-H-elongata_contig13334:3806..4133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13334 3807..4133 -
1622929791.1584194-CDS-H-elongata_contig13334:4309..43931622929791.1584194-CDS-H-elongata_contig13334:4309..4393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13334 4310..4393 -
1691679158.9548993-CDS-H-elongata_contig13334:4309..43931691679158.9548993-CDS-H-elongata_contig13334:4309..4393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13334 4310..4393 -
1622929791.1937652-CDS-H-elongata_contig13334:4729..48791622929791.1937652-CDS-H-elongata_contig13334:4729..4879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13334 4730..4879 -
1691679158.964227-CDS-H-elongata_contig13334:4729..48791691679158.964227-CDS-H-elongata_contig13334:4729..4879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13334 4730..4879 -
1622929791.2193515-CDS-H-elongata_contig13334:5076..52451622929791.2193515-CDS-H-elongata_contig13334:5076..5245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13334 5077..5245 -
1691679158.9758852-CDS-H-elongata_contig13334:5076..52451691679158.9758852-CDS-H-elongata_contig13334:5076..5245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13334 5077..5245 -
1622929791.2351735-CDS-H-elongata_contig13334:7199..73301622929791.2351735-CDS-H-elongata_contig13334:7199..7330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13334 7200..7330 -
1691679158.9930081-CDS-H-elongata_contig13334:7199..73301691679158.9930081-CDS-H-elongata_contig13334:7199..7330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13334 7200..7330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13334.2369.1

>prot_H-elongata_contig13334.2369.1 ID=prot_H-elongata_contig13334.2369.1|Name=mRNA_H-elongata_contig13334.2369.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=287bp
RNLQSTLAAERKKVILYCRREAIKRRTKDIAEGAKEARNMNKHKSDGMQN
VSKNMFNDIEENVSSVDSDDERLEGWKPPTASGIDNSNALSTYEDIASGN
VHKKLAQGTFGAEEVGTNGLKTSGSRAMDAYRMKQTGATATFDPTRGGAQ
VKMGKFTVQPPPGAPPLATALGLGTHAKSLKAKSDEDDDEDDDDDEDIKD
DLDGDGDNNDGEEENSENSDDDKPVGRTKGLHDAAKSPQLLDRAPCPSLK
SIGNPFQVRGFPGPPSGPLPSPFPVGGFGSSLGGPPG
back to top

mRNA from alignment at H-elongata_contig13334:3807..7330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13334.2369.1 ID=mRNA_H-elongata_contig13334.2369.1|Name=mRNA_H-elongata_contig13334.2369.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3524bp|location=Sequence derived from alignment at H-elongata_contig13334:3807..7330- (Himanthalia elongata Himel1 dioecious)
CGAAACTTGCAGTCTACGCTAGCTGCGGAGCGTAAGAAGGTGATATTATA
CTGCCGGAGGGAAGCTATCAAGCGCCGGACCAAAGACATTGCGGAGGGGG
CGAAGGAGGCACGCAACATGAACAAGCACAAGTGAGCAGGCTCTGGGCGG
GCGACGAACGGAACCCGAAGCATGGTCACATTTGACGCCGTTCGCTTTGC
CGTGACGAATCCGTTGCAATTCCTGATTTCTTAACTAATCGACCACGCTT
TCACCTTTATATGGTTTATACATTTCTTCCTTTTGGCTGATTGAATTGAT
TAAGTTCTCACATGATGAGCTGATGTCAAAATCCAGCCCGTGGTGGCAAG
GTAGATAAAACACTACCCGGAAGGAAAACATACAACATACTCTCCATACG
AAAAGGAAACGGCAATGAATGGTGCCTTAGCCTAAACATTTAATAGACAA
TCAGCTTCCGTCTACTGATCAATAATAAAAGCATACTTCAGTATAATATA
TATTATTCTACCTAAGACTGGTATCTAGCCCTTAGCATACAACTCTTAAA
CTTCTTACCGTACTATCACCCTACTTTAAAATAATGCCACCAACCCCCCC
CCGTGTCTTCTGACCCTAAAAATTATATACACATAATACAAATATCTACC
GGGCCTAACCAATATTTTTTCTAATTTGCATATTATGCCTAACAAGACAG
AAAAATAACATTAAAAGAAACCCTTCCTCTTTACAGCCCACTCTCTAAGC
TTTGGTTTGGCGTCCCCACATCATGATGAATAATGTAAATGTACGGGATA
ATGGGGGACTTCTCCCCGACATGACATTATACTGCTGACCCGATTAGTTC
CACACTCTAACATTGGGGAACACAATTAACCACATATCATTGCAATGACT
TTGTGCTCAAAAAGTAGCGATGTACACAACATTCGAACCTGACGATAGTT
GGTTCCCTGGACTGCACCTCTCACGGTGCTAAGAAAGCGTGGGTGTTCGA
AGGGTTGGAATTAGCTCATATGTTTTTAAAGGATAATGGTCTGAAAAAGG
AATCTCCAAGGAAAAAAGAAACAAAAAAAGGGGACACAGAGAGTTGTTTT
TATTAATTGCGTGCGGCTGTCGGCGCGCATGCTTGTTGCGTGGTTATCAC
ATATATAACAGAAGAAGGATCAACCGGATTTGGTTGACTCCTGCTTGTCG
TCAGCTGAGCAGGGAAGCTGAGTTTTCCCTGTCTCCGTTCGCGCCTGAGA
ATTTGTCTCGCGAGACGGGTTTGACAGTCCCGTTCCGTGTCATCCTGCTC
TTTATCTCAACCCAGCCTGAATCTGGTGCGTACTCCCGGGATCCTCTCGA
TCCTCTCGTTTTCTGCGACAGTGTCCATCTCTGCCTTCAACCGCCATCGG
GTCAATCCCGATTTCAGCAGGTCATCACGTAATTATTGCGTACCCATGAT
GTTTACCACCGAGAGTCCGCAGACAATGAGCCAGCAGTCCTCAAGGTAGC
TTGAGTAACGGGTGCAGCCTACTGAGGAGGTAACCCCATGGACCAATTAT
TGCGCGCATCTCTTTCCCACACCCACTATTATTGGTAAAAAGGTGGACAT
GATGTGCGACACAGTACATATCATACAGTATTAGAGGCCTATCGAAGAAC
GATTGAACAAAGAGCCGTGGATTAAATGCAAACAAAAGACGAAAACGAAA
CAATGCTTACAATAAGTTTTGCATACACTCGAACCTGACGATAGTTGGTC
CCCTGAACTTCACCTCTCATGGTGTAAAGAAGGTGTGGATGTTTGAAGGG
TTTGAATGAGTTTATAGTTTTTTTTAAGAAAAAGGGATTGAATTAGTTTG
TATGCTTTAAGAGAAAAATTACAAAAAACCCCGTAACGCCAGAGAAAGGC
AGTATGGCATCGGCAAACAAAAACGCACGGAGTATACGAGTTCGCGCCAC
TTGTGGCTAATCAACTATGGTGAGCGAACCAGCACGAGGCCGCTTGCTTT
GAGCTATCCTTTCATTGGTCTTTCCCGTCATCCCATTCGGTCCGCCATGT
ATCGATAAATGGACATCAACTATCGATCCACCCAGGTCGGACGGCATGCA
AAATGTATCAAAGAACATGTTCAATGACATCGAAGAAAATGTCAGCAGCG
TGGATAGCGACGACGAGCGTCTGGAAGGATGGAAGCCCCCCACTGCATCA
GGAATTGACAACAGCAATGCCTTATCAACGTACGAAGATATCGCAAGCGG
AAATGTACGTTTCGAATAACGAAAAGATCTGACCGATCGTGCTGCTGGGT
TGAGTAAGACATTCTAGTAGACGATTGTCAAACGATATCCCACAGACAAA
AGTATGCGCAGTCGCCCTTAGGGGCACATGTTGCATCATACGTGCGGAAC
GTCGGGCTTGGTTGGACTGAACAGGTCGACTTTTGATCCCAATGTGATCA
GGTGCATAAAAAGCTTGCACAAGGGACGTTCGGAGCCGAAGAGGTCGGTA
CCAACGGCCTGAAAACGTCGGGTTCTAGGGCCATGGATGCCTATCGGATG
AAACAAACTGGGGCAACCGCGACCTTCGATCCCACCCGAGGAGGGGCACA
GGTGCGGTAAGCTACAGCAGACAAGCTCAAAATGTGCATAGGATATATAT
ATATATATATATATATAGGCGTGAGTTTCTTTGAGGTTCGTGTCCGTCAT
GATCTCCTGCCTGCCCATACTGACTACCTGGTACGCAGGTCGTAGGCAGC
CAGATCGTGGTTCGGGGAGGAGTTGTAATTATGACATTTCAAGAGCTACT
GTTGCGTGGTCAGTTTATTCTTTGACTAAATGATCTATCCCAAAAGCTCA
AATTTCCATGTTTCCGCCTAAAAAGTGTGAGTCTTGTGTTTCTCAGTGGG
ATGCGTCCAGCGATAATCGCCGTCCTTCGTGGTTCAGGTAAAAATGGGAA
AGTTTACGGTTCAGCCACCCCCGGGAGCACCTCCGTTAGCAACTGCTCTA
GGACTCGGGACTCACGCTAAGGTGATATGCCCCTCCGAGTGATCGAGCTT
AGGTCACAAAACAACCAAGGGGTGGTACTGCCTTGCGCCGTGAAAGTGTT
TGAGGGGAAAAAAATTAAATGTGGGCTATGGGATAACGCCCGTTTGTCCG
AATATGTGTGTGTACGTCTCACCGCCATTCAGTTCCTAAAAGGCGAGAGT
CTAAAGGCAAAGAGCGACGAAGACGATGACGAAGACGATGACGATGACGA
AGACATCAAGGACGACCTCGATGGTGATGGTGATAATAACGACGGAGAAG
AGGAAAATTCTGAAAACAGCGACGACGACAAACCGGTAGGACGGACAAAA
GGGTTGCATGATGCTGCAAAATCACCACAACTATTAGATAGGGCTCCTTG
CCCTTCGCTAAAATCAATTGGCAATCCCTTTCAAGTTCGAGGATTTCCAG
GACCTCCTTCTGGACCGTTACCTAGTCCATTCCCAGTCGGAGGCTTCGGC
TCATCACTTGGAGGACCGCCAGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig13334:3807..7330-

>mRNA_H-elongata_contig13334.2369.1 ID=mRNA_H-elongata_contig13334.2369.1|Name=mRNA_H-elongata_contig13334.2369.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1722bp|location=Sequence derived from alignment at H-elongata_contig13334:3807..7330- (Himanthalia elongata Himel1 dioecious)
CGAAACTTGCAGTCTACGCTAGCTGCGGAGCGTAAGAAGGTGATATTATA
CTGCCGGAGGGAAGCTATCAAGCGCCGGACCAAAGACATTGCGGAGGGGG
CGAAGGAGGCACGCAACATGAACAAGCACAACGAAACTTGCAGTCTACGC
TAGCTGCGGAGCGTAAGAAGGTGATATTATACTGCCGGAGGGAAGCTATC
AAGCGCCGGACCAAAGACATTGCGGAGGGGGCGAAGGAGGCACGCAACAT
GAACAAGCACAAGTCGGACGGCATGCAAAATGTATCAAAGAACATGTTCA
ATGACATCGAAGAAAATGTCAGCAGCGTGGATAGCGACGACGAGCGTCTG
GAAGGATGGAAGCCCCCCACTGCATCAGGAATTGACAACAGCAATGCCTT
ATCAACGTACGAAGATATCGCAAGCGGAAATGTCGGACGGCATGCAAAAT
GTATCAAAGAACATGTTCAATGACATCGAAGAAAATGTCAGCAGCGTGGA
TAGCGACGACGAGCGTCTGGAAGGATGGAAGCCCCCCACTGCATCAGGAA
TTGACAACAGCAATGCCTTATCAACGTACGAAGATATCGCAAGCGGAAAT
GTGCATAAAAAGCTTGCACAAGGGACGTTCGGAGCCGAAGAGGTCGGTAC
CAACGGCCTGAAAACGTCGGGTTCTAGGGCCATGGATGCCTATCGGATGA
AACAAACTGGGGCAACCGCGACCTTCGATCCCACCCGAGGAGGGGCACAG
GTGCATAAAAAGCTTGCACAAGGGACGTTCGGAGCCGAAGAGGTCGGTAC
CAACGGCCTGAAAACGTCGGGTTCTAGGGCCATGGATGCCTATCGGATGA
AACAAACTGGGGCAACCGCGACCTTCGATCCCACCCGAGGAGGGGCACAG
GTAAAAATGGGAAAGTTTACGGTTCAGCCACCCCCGGGAGCACCTCCGTT
AGCAACTGCTCTAGGACTCGGGACTCACGCTAAGGTAAAAATGGGAAAGT
TTACGGTTCAGCCACCCCCGGGAGCACCTCCGTTAGCAACTGCTCTAGGA
CTCGGGACTCACGCTAAGAGTCTAAAGGCAAAGAGCGACGAAGACGATGA
CGAAGACGATGACGATGACGAAGACATCAAGGACGACCTCGATGGTGATG
GTGATAATAACGACGGAGAAGAGGAAAATTCTGAAAACAGCGACGACGAC
AAACCGGTAGGACGGACAAAAGGGTTGCATGATGCTGCAAAATCACCACA
ACTATTAGATAGGGCTCCTTGCCCTTCGCTAAAATCAATTGGCAATCCCT
TTCAAGTTCGAGGATTTCCAGGACCTCCTTCTGGACCGTTACCTAGTCCA
TTCCCAGTCGGAGGCTTCGGCTCATCACTTGGAGGACCGCCAGGAAGTCT
AAAGGCAAAGAGCGACGAAGACGATGACGAAGACGATGACGATGACGAAG
ACATCAAGGACGACCTCGATGGTGATGGTGATAATAACGACGGAGAAGAG
GAAAATTCTGAAAACAGCGACGACGACAAACCGGTAGGACGGACAAAAGG
GTTGCATGATGCTGCAAAATCACCACAACTATTAGATAGGGCTCCTTGCC
CTTCGCTAAAATCAATTGGCAATCCCTTTCAAGTTCGAGGATTTCCAGGA
CCTCCTTCTGGACCGTTACCTAGTCCATTCCCAGTCGGAGGCTTCGGCTC
ATCACTTGGAGGACCGCCAGGA
back to top