mRNA_H-elongata_contig13332.2368.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13332.2368.1
Unique NamemRNA_H-elongata_contig13332.2368.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 1.220e-112
Identity = 164/229 (71.62%), Postives = 186/229 (81.22%), Query Frame = 3
Query:   72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
            +P A  E P+ GE L+SEQLE VTAEVF ELGNMDQTPVQHEMPVET+LEK GAKDARI+TGGKEKER TLC+AV  D  KVPL  IFKGTP  PP++PGKGK TQPRK SIA E+   NR+K G+P  GMSFGVQ+KSWCD REC LWI  SW LRPNNGS++ Q P ILVLD+FKCH+D  FIA+L+++ NT VI IPGGLTPLLQ LDRMLNK+MK+LLRG YT Y
Sbjct:   25 NPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253          
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 2.450e-108
Identity = 166/229 (72.49%), Postives = 184/229 (80.35%), Query Frame = 3
Query:   72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
            HP A DE P+ GE L+ EQL  V AEVF+ELGNMDQTPVQHEMPVETTLEK GAKDARISTGGKEKER TL +AVMADG KV   IIFKGTPF PP   GKGK T PRK S+A E+   NR K  HPA GMSFGVQ+KSW D REC  WIS SW+LRPNNGSI+ Q P ILVLD+FKCH+D+ +IA L++  NT VI+IPGGLTPLLQ LDRMLNK+MK+LLRGKYTAY
Sbjct:   87 HPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 315          
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 328 bits (841), Expect = 7.610e-108
Identity = 166/229 (72.49%), Postives = 183/229 (79.91%), Query Frame = 3
Query:   72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
            HP A DE P+ GE L+SEQL  V AEVF+ELGNMDQTPVQHE+PVETTLEK GAKDARISTGGKEKER TL +AVMADG KV   IIFKGTPF PP   GKGK T PRK S+A E+   NR K GHPA GMSFGVQ+KSW D REC  WIS SW+LRPNNGSI+ Q P ILVLD+FKCH+D+ FIA L++  NT VI IPG LTPLLQ LDRMLNK+MK+LLR KYTAY
Sbjct:   87 HPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAY 315          
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 1.060e-105
Identity = 162/229 (70.74%), Postives = 181/229 (79.04%), Query Frame = 3
Query:   72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
            HP A DE P+ GE L+SEQL  V AEVF++LGNMDQTPVQHEMPVETTLEK GAKDAR+STGG+EKER TL +AV ADG KV L IIF GTPF PP   GKGK T PRK S+A E+   NR K GHPA GMSFGVQ+KSW D REC  W S SW+LRPNNGSI+ Q P ILVLD+FKCH+D+ FIA L++  NT VI IPGGLTPLLQ LDRMLNK+ K+LLR KYTAY
Sbjct:   21 HPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAY 249          
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 2.010e-102
Identity = 165/229 (72.05%), Postives = 183/229 (79.91%), Query Frame = 3
Query:   72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
            +P A  E P+ GE LSS QLE VT E+F+ELGNMDQTPVQHEMPVETTLE  GAKDARI+TGGKEKER TLC+AV ADG KVPL IIFKGTPF PP  PGKGK TQPRK SIA EV   NR+K G P  GMSFGVQ+KSWCD REC LWI +SW+LRPNNGSI+ Q   ILVLD+FKCH+D  FIA L++  NT VI IPGGL PL Q LDRMLNK+MK+LLRG YTA+
Sbjct:  241 YPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAH 469          
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 1.500e-101
Identity = 164/237 (69.20%), Postives = 179/237 (75.53%), Query Frame = 3
Query:   72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRL--------RPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
            HP A DE P+ GE L+SEQ   V AEVF+ELGNMDQTPVQHEMPVETTLE  G KDARISTGGKEKER TL +AVMADG  V  CIIFKGTPF PP   GKGK T PRK S+A EV   NR K GHPA GMSFGVQ+KSW   +EC  WI  SW+L        RPNNGSI+ Q P ILVLD+FKCH+D+ FIA L +  NT VI IPGGLTPLLQ LDRMLNK+MK+LLRGKYTAY
Sbjct:  241 HPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 477          
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 4.120e-101
Identity = 162/230 (70.43%), Postives = 181/230 (78.70%), Query Frame = 3
Query:   72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGG-KEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
            HP A DE P+ GE L+SEQL  V AEVF+E+GNMDQ PVQHEMPVETTL+K GAKDARISTGG  EKER TL +AV ADG KV   IIF+GTPF PP   GKGK T+PRK  +A E+   NR K GHPA GMSFGVQ+KSW D REC  WIS SW+LRPNNGSI+ Q P ILVLD+FKCH D+ FIA L++  NT VI IPGGLTPLLQ LDRMLNK+MK+LLRGKYTAY
Sbjct:  281 HPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510          
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 4.220e-101
Identity = 164/255 (64.31%), Postives = 186/255 (72.94%), Query Frame = 3
Query:   72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTG--------------------------GKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
            +P A  E P+ GE LSS QLE VT E+F++LGNMDQTPVQ+EMPVETTLEK GAKDARI+TG                          GKEKER TLC+AV ADG+KVPL IIFKGTPF PP  PGKGK TQPRK SIA EV   NR+K G P  GMSFGVQ+KSWCD RE  LWI +SW+LRPNNGS++ Q   ILVLD+FKCH+D  FIA L++  NT VI IPGGLTPLLQ LDRMLNK+MK+LLRG YTA+
Sbjct:  174 YPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 428          
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 1.900e-100
Identity = 160/224 (71.43%), Postives = 185/224 (82.59%), Query Frame = 3
Query:   72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRG 743
            +P AS E P+ G+ L+  QLE V A+VF+ELGNMDQTPVQ EMPVETTLEKRG KDARISTGGKEK+R T C+AVMADG KVP  IIFKG PF PP+  G+ K TQ RKG IAAEV L NRTK G+P  GM F VQ+KSWCDARECTLW+SESWR RPN+GS+I Q  SILVLD+F+CHR ++F+ DLR+R NT+VILIPGGLTPLLQ LDRMLNK+MK+L+RG
Sbjct:  156 NPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379          
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 1.520e-94
Identity = 155/229 (67.69%), Postives = 176/229 (76.86%), Query Frame = 3
Query:   72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
            +P AS E P+ G+ LS  QLE V  EVF+ELGNMDQTPVQ EMPVETTLEK GAKDARISTGGKEKER TLC+AVMADG KVPL IIFKG PF PP+   +GK TQPRKGSIAAEV   N+T  G+P  GMSFGVQ++SW DA ECTLW+SESW  RPN+GS+I Q  SILVLD+F              R NT+VILIPGGLTPLLQ LDRML+K+MK+L+R +YT Y
Sbjct:  260 NPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIKQRHSILVLDDF--------------RTNTTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQY 474          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI1.220e-11271.62DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE2.450e-10872.49DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE7.610e-10872.49DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE1.060e-10570.74DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE2.010e-10272.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE1.500e-10169.20DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE4.120e-10170.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE45_9PHAE4.220e-10164.31DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE1.900e-10071.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JQM5_9PHAE1.520e-9467.69DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13332contigH-elongata_contig13332:2453..3395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score294.3
Seed ortholog evalue4.3e-77
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size758
Cds size588
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13332.2368.1prot_H-elongata_contig13332.2368.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13332 2623..3395 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.044728-UTR-H-elongata_contig13332:2452..26221622929791.044728-UTR-H-elongata_contig13332:2452..2622Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13332 2453..2622 +
1691679158.9057715-UTR-H-elongata_contig13332:2452..26221691679158.9057715-UTR-H-elongata_contig13332:2452..2622Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13332 2453..2622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.0797763-CDS-H-elongata_contig13332:2622..27101622929791.0797763-CDS-H-elongata_contig13332:2622..2710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13332 2623..2710 +
1691679158.9203367-CDS-H-elongata_contig13332:2622..27101691679158.9203367-CDS-H-elongata_contig13332:2622..2710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13332 2623..2710 +
1622929791.0949693-CDS-H-elongata_contig13332:2895..33951622929791.0949693-CDS-H-elongata_contig13332:2895..3395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13332 2896..3395 +
1691679158.9293153-CDS-H-elongata_contig13332:2895..33951691679158.9293153-CDS-H-elongata_contig13332:2895..3395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13332 2896..3395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13332.2368.1

>prot_H-elongata_contig13332.2368.1 ID=prot_H-elongata_contig13332.2368.1|Name=mRNA_H-elongata_contig13332.2368.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
MDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVP
LCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSF
GVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKA
FIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY
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mRNA from alignment at H-elongata_contig13332:2453..3395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13332.2368.1 ID=mRNA_H-elongata_contig13332.2368.1|Name=mRNA_H-elongata_contig13332.2368.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=943bp|location=Sequence derived from alignment at H-elongata_contig13332:2453..3395+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTTTAGAACAGTGAAGAAGCTTCGGAAGGCTCTCCTGGAGCGCGC TGGCAAAATCTTCGGTGAGCGCACCCGTGTGCTTCTGATGAGCTCCCCGT GAACGGGGAGAAGCTGAGTTCCGAGCAGCTGGAGTGGGTGACGGCGGAGG TTTTCCAAGAACTCGGCAATATGGACCAGACGCCCGTCCAGCACGAGATG CCGGTGGAAACAACTCTGGAGAAGCGTGGTGCAAAGGATGCTCGCATCAG CACAGGAGGTGAGAGTATTGCGGCTGTGTGCTTGGCGATAGTACGTATTT TGCATCGTTTAATGTTTTTATTGTACGGTTGCTGCTGCATTTTTGGCACC GTAAAAATGCCCCCTCATCGTAAATACGAAGTATAAATCAAAACATGCAA CTGTAACCCCATCCCGCCCTCTGTTTGTGTCGACTCTCCGTAGGCAAAGA GAAGGAGCGCATCACTCTCTGTATGGCTGTCATGGCGGACGGCAGTAAAG TTCCGCTATGCATCATCTTCAAAGGCACGCCGTTCAACCCGCCGAACAAG CCGGGGAAGGGCAAGAGAACTCAGCCGCGAAAGGGGTCCATCGCGGCAGA GGTTGCCCTCGGAAATCGTACCAAGCTCGGGCACCCCGCGGTGGGCATGT CGTTTGGTGTGCAGAAGAAAAGCTGGTGTGACGCGCGGGAGTGCACCCTT TGGATCTCGGAGAGCTGGAGGCTTCGCCCCAACAACGGAAGCATCATCAC GCAGTGCCCGAGCATCCTGGTGTTGGACAACTTCAAGTGCCACCGTGACA AGGCCTTCATCGCTGACCTCCGGAAGAGGTGCAACACCAGCGTCATCCTG ATCCCGGGCGGGCTGACTCCTCTCCTCCAGTCGCTGGACCGCATGCTCAA CAAGAAGATGAAGCAGCTACTGCGGGGAAAGTACACCGCCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig13332:2453..3395+

>mRNA_H-elongata_contig13332.2368.1 ID=mRNA_H-elongata_contig13332.2368.1|Name=mRNA_H-elongata_contig13332.2368.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig13332:2453..3395+ (Himanthalia elongata Himel1 dioecious)
ATGGACCAGACGCCCGTCCAGCACGAGATGCCGGTGGAAACAACTCTGGA
GAAGCGTGGTGCAAAGGATGCTCGCATCAGCACAGGAGATGGACCAGACG
CCCGTCCAGCACGAGATGCCGGTGGAAACAACTCTGGAGAAGCGTGGTGC
AAAGGATGCTCGCATCAGCACAGGAGGCAAAGAGAAGGAGCGCATCACTC
TCTGTATGGCTGTCATGGCGGACGGCAGTAAAGTTCCGCTATGCATCATC
TTCAAAGGCACGCCGTTCAACCCGCCGAACAAGCCGGGGAAGGGCAAGAG
AACTCAGCCGCGAAAGGGGTCCATCGCGGCAGAGGTTGCCCTCGGAAATC
GTACCAAGCTCGGGCACCCCGCGGTGGGCATGTCGTTTGGTGTGCAGAAG
AAAAGCTGGTGTGACGCGCGGGAGTGCACCCTTTGGATCTCGGAGAGCTG
GAGGCTTCGCCCCAACAACGGAAGCATCATCACGCAGTGCCCGAGCATCC
TGGTGTTGGACAACTTCAAGTGCCACCGTGACAAGGCCTTCATCGCTGAC
CTCCGGAAGAGGTGCAACACCAGCGTCATCCTGATCCCGGGCGGGCTGAC
TCCTCTCCTCCAGTCGCTGGACCGCATGCTCAACAAGAAGATGAAGCAGC
TACTGCGGGGAAAGTACACCGCCTACGCAAAGAGAAGGAGCGCATCACTC
TCTGTATGGCTGTCATGGCGGACGGCAGTAAAGTTCCGCTATGCATCATC
TTCAAAGGCACGCCGTTCAACCCGCCGAACAAGCCGGGGAAGGGCAAGAG
AACTCAGCCGCGAAAGGGGTCCATCGCGGCAGAGGTTGCCCTCGGAAATC
GTACCAAGCTCGGGCACCCCGCGGTGGGCATGTCGTTTGGTGTGCAGAAG
AAAAGCTGGTGTGACGCGCGGGAGTGCACCCTTTGGATCTCGGAGAGCTG
GAGGCTTCGCCCCAACAACGGAAGCATCATCACGCAGTGCCCGAGCATCC
TGGTGTTGGACAACTTCAAGTGCCACCGTGACAAGGCCTTCATCGCTGAC
CTCCGGAAGAGGTGCAACACCAGCGTCATCCTGATCCCGGGCGGGCTGAC
TCCTCTCCTCCAGTCGCTGGACCGCATGCTCAACAAGAAGATGAAGCAGC
TACTGCGGGGAAAGTACACCGCCTAC
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