mRNA_H-elongata_contig13329.2365.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13329.2365.1
Unique NamemRNA_H-elongata_contig13329.2365.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: D7G7X5_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X5_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 5.450e-134
Identity = 288/625 (46.08%), Postives = 344/625 (55.04%), Query Frame = 1
Query:    1 MSAIRSAMTERPVDPKETVIGANRLPVIPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHS--GMIRQRGGGDCRLGVPVKWVKHQLPGAEIAYQVYGRHRGKSELAQLWKDMKRDTVSINGRVLKGEVGPEAIVGALMRCILAQAGRLPASDSLSKLSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQVTLHPRVPA----------------------------------------------------------------KAPPWSRR--------GNSGDRPLVSMCSP----------------------ELP-----TTPLSASPIGARLPLAPPDTPTPPSMNLCHNSRGHKYKKTA----GLVR-------DRYAKPSIELDHFIGGRSTDARSSGARS-VGGSGIFTSFARRWG-----GRTSQGIHSREGSSTSTTPSMV---DDTSAGREESRMGRGPAFASAGATTSRSLFVEDTTDEGGHGSDSTGDESTGDGRSSRRSHIRVACTARTSYKLFSSDPQDE-RDVYALITGLFEQTFTISRELPAGIGRRTASGIGTATYTEGSVAFLTFREPHIRRESI 1509
            +SAI++AMTERPV+P ET++G ++LP+IP DSCHR  M+SYLS R  LR A S EDYL+AL+ L   +G    G +++ G  D  +GVPVKWVK QLPG+E  YQ  GR RGKSELAQLWKDMKRDTVSINGRV+ GE GPE I+GAL RCILAQAGRL ASDSLSKLSEAQSLL ARDVLLACDRTTSGGDTYLV DNLCRNP LVVLVPASQEAEPL+I VTLHPR                                                                   ++PP +R         G  GD    +   P                      ++P     T   + S +G R  +AP   P PP M    +  G      A    GL R       +  A P+ +    +    T     G  S   G GIF S ARR       G +   +      S     S +   D +  G +E  +  G + A A A  S  +F  DT D+GG  S S+ DE   DG   R S+I+V CTARTSYKLFSSDPQDE RDVYA++TGLFEQ+FTISRE PAG G R +SG+G AT TEGSVAFLTF +P I+R+S+
Sbjct:   52 VSAIKAAMTERPVNPDETILGEDQLPIIPHDSCHRHHMESYLSARGFLRNATSTEDYLSALKGLMAEVGRGTGGGLQEGGEKDSSMGVPVKWVKQQLPGSERVYQASGRGRGKSELAQLWKDMKRDTVSINGRVMTGERGPEGIIGALTRCILAQAGRLSASDSLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCRNPPLVVLVPASQEAEPLDITVTLHPRAAQVQTQGHKQSPSRHYRHTIDGGTKGPQPNSPPSPGELPEXXXXSSLGSGSAAASPSFGHRSSGVQRSPPSARNSEGGFTSPGGGGDGDTKAQHQPVGKGGGRNGVQTGGGVKRRGRLKIPGSGRVTLTRTGSAMGGR--VAPTTLPVPPDMRQAASWDGGTQSLAATAPAGLGRPWAEDEGEAVASPTGQRKPGLVSSKTYGADGGEGSGATGGGIFASLARRRSVDQAAGYSGSNVGLNSKRSVPYAMSAIGQGDSSGKGHKEGGVRGGLSSAPAAALASYKMFFGDT-DDGGEESGSSNDEE--DGPLFRTSYIQVTCTARTSYKLFSSDPQDEERDVYAVVTGLFEQSFTISREFPAGSGSRASSGMGNATRTEGSVAFLTFHDPAIKRQSL 671          
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A6H5KYY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY2_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 6.390e-39
Identity = 153/444 (34.46%), Postives = 193/444 (43.47%), Query Frame = 1
Query:  544 CDRTTSGGDTYLV-ADNLCRNPDLVVLVPASQEAEPLEIQVTLHPRVPAK----------------------------------------------------------------APPWSRR----------GNSGD-------------------------RPLVSMCSPELPTTPLSASPIGARLPLAPPDTPTPPSMNLCHNSRGHKYKKTA----GLVR-------DRYAKPSIELDHFIGGRSTDARSSGARS-VGGSGIFTSFARR--------WGGRTSQGIHSREG-SSTSTTPSMVDDTSAGREESRMGRGPAFASAGATTSRSLFVEDTTDEGGHGSDSTGDESTGDGRSSRRSHIRVACTARTSYKLFSSDPQDE-RDVYALITGLFEQTFTISRELPAGIGRRTASGIGTATYTEGSVAFLTFREPHIRRESI 1509
            C  +  G  T  +  DNLCRNP LVVLVPASQEAEPL+I VTLHPR   K                                                                +PP +R           G  GD                         R  + +      T   + S +G R  +AP   P PP M    +  G      A    GL R       +  A P+ +    +    T     G  S   G GIF S ARR        + G ++ G++S+    S  +     D +  G +E  +  G + A A A  S  +F  DT D+GG  S S+ DE   DG   RRS+I+V CTARTSYKLFSSDPQDE RDVYA++TGLFEQ+FTISRE PAG G R +SG+G AT TEGSVAFLTF +P I+ +S+
Sbjct:   63 CSSSRCGKPTDAIQVDNLCRNPPLVVLVPASQEAEPLDITVTLHPRAAQKQTQGHKQNPSRHYRHTIDGGTKGSQANSPPSPGELPEXXXXXXLGSASAAASRSFEHRSSGVQRSPPSARNSEGEFTSPGGGGDGDTKAQHQLVGKGGGRNGVQTGGGSKRRGRLKIPGSGRVTLTRTGSAMGGR--VAPTTLPVPPDMRQTASWEGGTQSLAATAPAGLGRPWAEDEGEAVASPTGQRKPGLVSSKTYGADGGEGSGPTGGGIFASLARRRSVDQAAGYSG-SNVGLNSKRSVPSAMSAMGQGDSSGKGHKEGGVRGGLSSAPAAALASYKMFFGDT-DDGGEESGSSNDEE--DGPLFRRSYIQVTCTARTSYKLFSSDPQDEERDVYAVVTGLFEQSFTISREFPAGSGSRASSGMGNATRTEGSVAFLTFHDPAIKHQSL 500          
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A7S4HSG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HSG3_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.060e-33
Identity = 97/224 (43.30%), Postives = 128/224 (57.14%), Query Frame = 1
Query:   82 IPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALR--KLGGTLGHSGMIRQRGGGDCR-----------------LGVPVKWVKHQLPGAEIAYQVYG-RHRGKSE-LAQLWKDMKRDTVSINGRVLKGEV--GPEAIVGALMRCILAQ----AGRLPASDSLSK---LSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV 663
            +P  S +RAD++ YL+V+++++ A S E Y+ AL    L G  G  G +      D                   L VPV+W+K Q+  A     V   R  G S  +AQLWKDM RD+V+ING +LKG+   GPE IVGAL R I++     A    A  S  +   ++EAQS+  ARDVLLAC RT SGGD+Y   DNLC N DLVVL P++ EAEPL+I+V
Sbjct:    3 VPSRSPYRADLEQYLAVQSAVKKASSREAYMRALSVLMLPGGAGGGGSVLPSPPSDLASQASDAGSAQSQPSGRSLNVPVQWIKEQVEVASGGDGVRAFREEGVSTGIAQLWKDMSRDSVTINGELLKGDSPHGPECIVGALTRSIMSHDRSAAQNTAAPSSYRRKFAINEAQSVSYARDVLLACSRTRSGGDSYYCVDNLCSNSDLVVLCPSTAEAEPLKIEV 226          
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A6U3S3W6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3S3W6_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.620e-28
Identity = 80/205 (39.02%), Postives = 119/205 (58.05%), Query Frame = 1
Query:   79 VIPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHSGMIRQRGGGDCRLGVPVKWVKHQ---LPGAEIAYQVYGRHRGKSELAQLWKDMKRDTVSINGRVLKGEVG--PEAIVGALMRCILA---QAGRLPASDSLSK--LSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV 663
            ++PP+S ++ +++ YL V+  ++ A S E+Y+  L  L G                 L VPV+W+K     L  ++ A + +      + ++QLWKDM RD+VSING +  G+ G  PE I+G L RCI+     + R   S+ + K  ++E+ +L  ARDVLL+C+RT SGGD+Y   D LC NPDLVVL P+S  AEPL + V
Sbjct:  185 IVPPNSPYKQNLEEYLRVQKGVKNATSKEEYVGMLSLLCGV---------------PLNVPVQWIKEHVETLSSSQNASKAFEEDSVSNGISQLWKDMLRDSVSINGDLFAGDSGHGPEQIIGELTRCIMKFDRMSLRNVDSNVMKKFRITESMALSYARDVLLSCNRTRSGGDSYYCVDTLCSNPDLVVLCPSSTVAEPLTVTV 374          
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A7S2U7T9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7T9_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.800e-27
Identity = 82/207 (39.61%), Postives = 117/207 (56.52%), Query Frame = 1
Query:   82 IPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHSGMIRQRGGGDCRLGVPVKWVKHQLPGAEIAYQVYGRHRGKSE-----LAQLWKDMKRDTVSINGRVLKGEV--GPEAIVGALMRCILAQAGRLPASDSLS------KLSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV 663
            IP  S  + D+  YL V+T ++TA S   YL +L++  G                 L VPV+W++  +  +  +  + G    + E     + QLWKDM RD+VSING++ KG+   GPE I+GAL RCI+    R+  S   +      +++EAQ+L  ARDVLLAC+RT SGGD+Y   D LC N  LV L P+S EA+P++I V
Sbjct:  160 IPAQSPFKNDLIHYLKVQTKIKTARSKTHYLGSLKRCVGV---------------PLNVPVQWIREHVESSSSS--ITGAEAFREEDVSVGMKQLWKDMLRDSVSINGKIYKGDDPHGPERIMGALARCIM----RVDRSTEQAHIGDKHRITEAQALSYARDVLLACNRTRSGGDSYYCFDTLCNNSHLVALCPSSTEADPMKIVV 345          
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A7S1ZZ15_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ15_TRICV)

HSP 1 Score: 116 bits (290), Expect = 1.020e-26
Identity = 69/149 (46.31%), Postives = 94/149 (63.09%), Query Frame = 1
Query:  250 LGVPVKWVKHQLPGAEIAYQVYGRHRGKSE--LAQLWKDMKRDTVSINGRVLKGEVG--PEAIVGALMRCILAQ----AGRLPASDSLSK---LSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV 663
            L VPV+W+K Q+  +  A      H       + QL+KDM+RD+V ING + KG+ G  PE I+GAL R I+      A  + A+ +  +   ++EAQ++  ARDVLLAC+RT SGGD+Y   DNLC N DLVV+ P++ EAEPL IQV
Sbjct:   11 LNVPVQWIKEQVEVSSAANSEKAFHEEGVAGCVTQLFKDMQRDSVIINGELYKGDSGHGPERIIGALSRSIIKHDRTAAQNIQAAAAFKRKFGITEAQAISYARDVLLACNRTRSGGDSYFCVDNLCSNQDLVVVCPSTAEAEPLRIQV 159          
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A1Z5JSL6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSL6_FISSO)

HSP 1 Score: 118 bits (296), Expect = 1.550e-24
Identity = 80/216 (37.04%), Postives = 120/216 (55.56%), Query Frame = 1
Query:   82 IPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHSGMIRQRGGGDCRLGVPVKWVKHQ--LPGAEIAYQVYGRHRGKSELAQLWKDMKRDTVSINGRVLKGEVG--PEAIVGALMRCIL--AQAGRLPASDSLSKLSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV-------TLHPRVPAK 690
            I P S  R D++ +   ++ +R A S++DY+A LR   G L HS            L VP+KW+  Q  + G +     +        + QLW+D +RD++ I+G V +G+VG  PE I  AL+R IL  +Q G     D+   LSE+Q+L  ARD LLA +RT +GGD+Y    +LC+N +LVV+VP + E EP  ++V       +LH R+ +K
Sbjct:  305 IDPRSPFRDDLRLFAKSQSKMRNARSMQDYIAELR---GILNHS------------LEVPIKWIARQAIISGGDEMEGAFREETIDLSVDQLWRDQQRDSIKIDGVVYQGDVGHGPERITAALLRRILDVSQTG-----DAARSLSESQALALARDALLAGNRTRTGGDSYFCIKSLCKNDNLVVIVPKAGEVEPTSLEVCEDNSDNSLHSRLDSK 500          
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: K0TJJ1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJJ1_THAOC)

HSP 1 Score: 116 bits (290), Expect = 2.910e-24
Identity = 89/226 (39.38%), Postives = 120/226 (53.10%), Query Frame = 1
Query:    1 MSAIRSAMTERPVDPKETVIGANRLPVIPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHSGMIRQRGGGDCRLGVPVKWVKHQL-----PGAEIAYQVYGRHRGKSELAQLWKDMKRDTVSINGRVLKGEVGPEAIVGALMRCILAQAGRLPASDSLSKLSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV 663
            + AIR AM   P    +    A RLP   P S        +  +R +  +A S E+YL A+           ++R     D  L VPV +VK        PG      V        +LAQ+WKD++RD V +NGRVL GE  PE I+G+L   IL+   R   +D    ++E+Q++  ARDVLLACDRT S GD+YL A+NLC N D+VVL PAS  A+P+ I+V
Sbjct:  162 VEAIRRAMAGPPSAVVDGYSPAKRLPDSSPYSM-------FAVIRDATSSARSKEEYLQAIE----------LMR-----DKSLQVPVNFVKVNYAALGSPGDHAQTDV------TEDLAQMWKDLRRDFVDVNGRVLSGEPFPEPIMGSLALEILS---RYHGND----VTESQAVSCARDVLLACDRTKSSGDSYLCAENLCLNRDMVVLCPASTGAKPISIRV 352          
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: A0A7S1VEQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VEQ9_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.000e-23
Identity = 77/204 (37.75%), Postives = 113/204 (55.39%), Query Frame = 1
Query:  103 RADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHSGMIRQRGGGDCRLGVPVKWVKHQLPGAEIAYQVYGRHRGKSELAQLWKDMKRDTVSINGRVLKGEVG--PEAIVGALM-------RCILAQAGRL-------PASDSLSKLSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQVT 666
            + D++ YL ++  +R A   + Y++AL            I + G G   L VPV W++ Q    E   +++      S + QLWKD+ RDTV +NG + +G  G  PE I+GAL        R I+ Q+GR+       P     +++SE Q+L  ARD+LLA +RT SGGD+Y   D LCRN DLVV  P S EAEPL+++++
Sbjct:  501 KKDLEKYLRIQKDIRGATDKDTYVSAL------------ITKMGVGTS-LKVPVIWIE-QNSMFEDPDKIFKEEGVSSSVDQLWKDLFRDTVRVNGELFQGGSGHAPERIIGALTKEILSYDRSIMQQSGRVGFVNTASPNKRRKNEISEVQALAYARDILLAGNRTRSGGDSYYCVDALCRNADLVVATPRSAEAEPLQVKIS 690          
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Match: B8C5V8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5V8_THAPS)

HSP 1 Score: 112 bits (281), Expect = 1.000e-22
Identity = 76/198 (38.38%), Postives = 109/198 (55.05%), Query Frame = 1
Query:   82 IPPDSCHRADMKSYLSVRTSLRTALSIEDYLAALRKLGGTLGHSGMIRQRGGGDCRLGVPVKWVKHQLPGAE-IAYQVYGRHRGKSELAQLWKDMKRDTVSINGRVLKGEV--GPEAIVGALMRCILAQAGRLPASDSL-SKLSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCRNPDLVVLVPASQEAEPLEIQV 663
            +P +S + A ++ YL VR ++  A S +DYL AL  L G                 + +P++W+K QL  +   A+Q      G   + QLWKD+ RD+V ING+V+ GE   GP+ I+G L + I+         D   S ++E Q++  ARD++LA DRT SGGD+Y   +NLC N DLVV+ P S  A PL I V
Sbjct:  290 LPKNSPYSAFIEQYLQVREAINGAESKQDYLKALSILRGK---------------SIMIPIQWLKTQLDDSTPTAFQEADMSSG---VDQLWKDLLRDSVEINGQVISGESFHGPDRIIGNLTQLIIHHNQYNSCHDGKQSSITEVQAVSYARDIMLATDRTRSGGDSYYCIENLCLNRDLVVICPTSTVAAPLSITV 469          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13329.2365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7X5_ECTSI5.450e-13446.08PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KYY2_9PHAE6.390e-3934.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4HSG3_9STRA4.060e-3343.30Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A6U3S3W6_9STRA1.620e-2839.02Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2U7T9_9STRA1.800e-2739.61Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1ZZ15_TRICV1.020e-2646.31Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A1Z5JSL6_FISSO1.550e-2437.04Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
K0TJJ1_THAOC2.910e-2439.38Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1VEQ9_9STRA2.000e-2337.75Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
B8C5V8_THAPS1.000e-2238.38Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13329contigH-elongata_contig13329:4619..8073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score422.2
Seed ortholog evalue3.5e-115
Seed eggNOG ortholog2880.D7G7X5
EggNOG OGs2DN4Z@1,2S66D@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_010540.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size1509
Cds size1509
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929790.4702225-CDS-H-elongata_contig13329:4618..46701622929790.4702225-CDS-H-elongata_contig13329:4618..4670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 4619..4670 -
1691679158.6973796-CDS-H-elongata_contig13329:4618..46701691679158.6973796-CDS-H-elongata_contig13329:4618..4670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 4619..4670 -
1622929790.4838727-CDS-H-elongata_contig13329:4987..51151622929790.4838727-CDS-H-elongata_contig13329:4987..5115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 4988..5115 -
1691679158.7145126-CDS-H-elongata_contig13329:4987..51151691679158.7145126-CDS-H-elongata_contig13329:4987..5115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 4988..5115 -
1622929790.5497813-CDS-H-elongata_contig13329:5382..61291622929790.5497813-CDS-H-elongata_contig13329:5382..6129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 5383..6129 -
1691679158.7248876-CDS-H-elongata_contig13329:5382..61291691679158.7248876-CDS-H-elongata_contig13329:5382..6129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 5383..6129 -
1622929790.627196-CDS-H-elongata_contig13329:6598..67211622929790.627196-CDS-H-elongata_contig13329:6598..6721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 6599..6721 -
1691679158.7322044-CDS-H-elongata_contig13329:6598..67211691679158.7322044-CDS-H-elongata_contig13329:6598..6721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 6599..6721 -
1622929790.6411445-CDS-H-elongata_contig13329:6981..71311622929790.6411445-CDS-H-elongata_contig13329:6981..7131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 6982..7131 -
1691679158.7396643-CDS-H-elongata_contig13329:6981..71311691679158.7396643-CDS-H-elongata_contig13329:6981..7131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 6982..7131 -
1622929790.6567743-CDS-H-elongata_contig13329:7349..75391622929790.6567743-CDS-H-elongata_contig13329:7349..7539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 7350..7539 -
1691679158.751057-CDS-H-elongata_contig13329:7349..75391691679158.751057-CDS-H-elongata_contig13329:7349..7539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 7350..7539 -
1622929790.6880043-CDS-H-elongata_contig13329:7954..80731622929790.6880043-CDS-H-elongata_contig13329:7954..8073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 7955..8073 -
1691679158.7586045-CDS-H-elongata_contig13329:7954..80731691679158.7586045-CDS-H-elongata_contig13329:7954..8073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13329 7955..8073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13329.2365.1prot_H-elongata_contig13329.2365.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13329 4619..8073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13329.2365.1

>prot_H-elongata_contig13329.2365.1 ID=prot_H-elongata_contig13329.2365.1|Name=mRNA_H-elongata_contig13329.2365.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=503bp
MSAIRSAMTERPVDPKETVIGANRLPVIPPDSCHRADMKSYLSVRTSLRT
ALSIEDYLAALRKLGGTLGHSGMIRQRGGGDCRLGVPVKWVKHQLPGAEI
AYQVYGRHRGKSELAQLWKDMKRDTVSINGRVLKGEVGPEAIVGALMRCI
LAQAGRLPASDSLSKLSEAQSLLTARDVLLACDRTTSGGDTYLVADNLCR
NPDLVVLVPASQEAEPLEIQVTLHPRVPAKAPPWSRRGNSGDRPLVSMCS
PELPTTPLSASPIGARLPLAPPDTPTPPSMNLCHNSRGHKYKKTAGLVRD
RYAKPSIELDHFIGGRSTDARSSGARSVGGSGIFTSFARRWGGRTSQGIH
SREGSSTSTTPSMVDDTSAGREESRMGRGPAFASAGATTSRSLFVEDTTD
EGGHGSDSTGDESTGDGRSSRRSHIRVACTARTSYKLFSSDPQDERDVYA
LITGLFEQTFTISRELPAGIGRRTASGIGTATYTEGSVAFLTFREPHIRR
ESI
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mRNA from alignment at H-elongata_contig13329:4619..8073-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13329.2365.1 ID=mRNA_H-elongata_contig13329.2365.1|Name=mRNA_H-elongata_contig13329.2365.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3455bp|location=Sequence derived from alignment at H-elongata_contig13329:4619..8073- (Himanthalia elongata Himel1 dioecious)
ATGAGTGCAATCCGGAGCGCGATGACCGAGCGGCCGGTGGACCCTAAGGA AACAGTAATCGGTGCAAATCGACTGCCGGTGATCCCGCCCGACTCTTGCC ACAGAGCTGACATGAAAAGGTACAGTGCGACGCGATCGCTCTCCGCCCTG GTCAAACGCTACCGTGAAGGCTAGCAGATAATCTTGTACTCGACGAACCG GTACGATGCGCGTGAGGCCGGCCGGGTCTAAGGTGTCGGGACACTCCAGA CAGGCAATCGGTTTACGGCGGCGTCGGAGAGAAAACCATTGCTAGTATTG GTCACCTGGGGTCGGGGGGGATGGAGGTCACGAGGGCTGCTGCAGTGAGA CGATGAAAGCATCTCAGCTTAGCCCTGTCGAGCTTGCGTAACACCCCCTT TATCCCAAGCGGTGTCCAGTCGATGCACCGACTCAGTGTTAATTCCCCGT TTTTTGGGGGGGGCGTCGACTGAACGAGGGGGCTGGCCTGACCGATTACA CGTAACTTCGCCCCAAACTCACCGTCAAGCGCAGCTATTTGTCTGTACGA ACGTCCCTCCGGACGGCGTTGAGCATCGAGGATTACCTGGCGGCTCTAAG GAAGCTAGGGGGAACGTTAGGACACTCGGGCATGATCAGGCAGAGAGGGG GAGGGGACTGTCGCCTGGGCGTTCCGGTGAAGTGGGTCAAGCACCAATTG CCTGGGGCAGAGATAGCCTACCAGGTAGGACTCTTCATCTCGAGCGAGTC ACCTAGAAGTCGGGGGCGTGATTGGCGGACTTCGGCGCACACTAATGCAC CCCTAAAAAAAACAAGAGCGGCTTGCGAGTCGAAGGTGTAGGGGCGTTGG AAGGCTGCTTATTTTCTCTGCCGCACTCAACCTCAAGAGCTTCTTCGTGC AACCCGCCACTTGCGCTTGGCTCGGCGGGGCGAACACCCAAGGTGTACGG TCGACACAGAGGGAAGTCGGAGTTGGCGCAGCTATGGAAGGACATGAAGC GGGACACTGTTTCCATCAACGGTCGGGTGCTCAAGGGGGAGGTGGGCCCC GAGGCCATCGTCGGGGCCCTGATGCGGTGCATCCTCGCGCAGGTGAAGCG ACTGGCGACGACGTCACAGGAAAATTATAGCGATCTGCTGCAGGGTACCT CGTCGCTTGGTGCTTGCTCCCATCCGGATCGGATTATTTTTCGGTGGTGG TTGTGGCGGCGGCTGCCGATGATGCCGATGCTCGTGCGGGCGTGAGCGCA ACTTGCTCCCTCCGGGAAATAATTTCTCGATGTGTAGACATTATATATTT ATATACCAGTATAGGTCACTCGATTTATAATGCCGTGCGTCGCGCACATC AGGCTGGGCGACTCCCGGCGTCTGACTCGTTATCGAAGCTGTCGGAGGCC CAGAGCCTTTTGACCGCACGTGACGTTCTGCTCGCGTGTGACCGCACCAC CTCGGGAGGAGACACCTACCTCGTGGTGAGCATTACGCAACACTCGTTCA TGTTTTGGGGAATGGGGAGTTGTCTGCAAGAGCGACGCGCATATTCCGAG CGGGCTGGGTGCTGACAGCGAGCGTTACTCGTGTTGTTCGTAAGACCCAG AGACCGTCAATTGGATTGTCAAAATAAAAGAGCATCGCTTGTCGGATGAA TTTTGTGGTCGCCATTGTGGTCGGAAGTATGCGGCATCGTTTTTGGTTCG TGATCGTTGTCGTCTAGTAGACGCCAAGCGCCGTTCGGGTACTGCTGGCT CTCCGGCGCGTATCACCATATGTCGTCTGCTCCGAACTTGTCACGTTGAT CCACCTGCCGATTATCAACTTGTGCTCCTCTCGGGATACGGCTCGCGCCG TAGGAGACGCTTCTGGAAGCATCTCATCAGTATATCTTTTTGAGGTGAAG CGCTCGTGTTCTTTTCAACCCACTGAATCTTTCGGCAAATCCAGGCGGAC AACCTGTGCCGCAACCCCGACCTAGTGGTCCTAGTCCCGGCCTCTCAAGA GGCCGAGCCGCTCGAGATACAAGTTACCCTCCACCCTCGCGTTCCGGCGA AAGCCCCACCGTGGTCTCGTAGAGGAAACTCGGGCGACCGTCCGCTTGTG AGCATGTGTTCTCCCGAGCTTCCGACGACCCCTCTTTCGGCGTCTCCCAT TGGGGCTCGTTTGCCCCTGGCACCACCGGACACTCCTACGCCCCCATCGA TGAACTTATGCCATAACTCTAGGGGACATAAATATAAGAAGACTGCTGGG TTGGTGCGCGATCGATACGCGAAGCCGAGCATAGAGCTGGATCATTTTAT TGGCGGAAGGTCAACCGACGCCAGGTCAAGCGGTGCTAGATCAGTCGGCG GCAGCGGTATATTTACTTCTTTCGCGCGACGGTGGGGTGGCCGCACCTCA CAGGGAATCCATTCGCGAGAAGGCTCCAGTACATCGACTACGCCGAGCAT GGTGGACGACACTTCAGCGGGTCGAGAGGAATCGAGGATGGGCCGTGGAC CAGCCTTCGCCTCCGCTGGGGCAACAACGTCGCGATCTTTGTTTGTCGAG GACACCACCGATGAAGGCGGGCATGGATCTGACTCGACGGGGGACGAGAG CACTGGGGACGGGCGATCGAGTCGCAGGAGTCACATCAGGGTGGCGTGCA CAGCGAGGACGTCTTACAAATTGTTTTCGAGCGATCCTCAGGTGCAGACA TCTAAGAGGTATCTGGTCTTGGCCCCCAAAAGTGCCGTTATCTGAGGCCT AAACAGCCGAAAGGTGTTATGGCGGATCTCTCGATACCTCCAAACAATAT GAAGTAGACGCTTAACTCTACACCACGGATTTTCTCCCCCCCCCCTTTCA TTCTGAAACCAAAAACGCCTCGCCAAGATAGTAAAAACATGTAGCCATTA ACCTTTGCCTCTGGTGTTACATTCCTCCTGTGTGCCCTTTTGATAAAAAA TCGGACAGGATGAACGAGACGTGTATGCCCTGATAACCGGCCTGTTCGAA CAGACCTTCACGATTTCGAGGGAACTTCCCGCTGGCATCGGAAGACGAAC CGCCTCTGGGATTGGTACTGCCACATATACCGAAGGGTGAGACTCCGGCG GCCTAACCCCGGATTGTCAGCACACGCGTTTTTGCCCAAAATCTGGAACG GGCGTTGCGTGTATCGCTTCTGAATTGTGACTTGTTTGACCCACCTGTAT CCCTCGGACAACACCTCAAGATACGGCCCGTAGTCGTGGCGCGATACTTG CGAGTTAACTCAGCGAATATTTCAGCTCTTGTGCGTGCGAACGCACTTTG TCTCGACCAAAAGATTCGTTCCTCTGGAGCACGGAGGAACCGCTGCCGAG TTCACAATTCCGACGAATTCGGTGCGCCACGTATTCCCCCGTGACTACCA CAGGAGCGTTGCGTTTCTTACTTTCAGAGAGCCCCATATCAGGCGCGAAA GCATC
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Coding sequence (CDS) from alignment at H-elongata_contig13329:4619..8073-

>mRNA_H-elongata_contig13329.2365.1 ID=mRNA_H-elongata_contig13329.2365.1|Name=mRNA_H-elongata_contig13329.2365.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3018bp|location=Sequence derived from alignment at H-elongata_contig13329:4619..8073- (Himanthalia elongata Himel1 dioecious)
ATGAGTGCAATCCGGAGCGCGATGACCGAGCGGCCGGTGGACCCTAAGGA
AACAGTAATCGGTGCAAATCGACTGCCGGTGATCCCGCCCGACTCTTGCC
ACAGAGCTGACATGAAAAGATGAGTGCAATCCGGAGCGCGATGACCGAGC
GGCCGGTGGACCCTAAGGAAACAGTAATCGGTGCAAATCGACTGCCGGTG
ATCCCGCCCGACTCTTGCCACAGAGCTGACATGAAAAGCTATTTGTCTGT
ACGAACGTCCCTCCGGACGGCGTTGAGCATCGAGGATTACCTGGCGGCTC
TAAGGAAGCTAGGGGGAACGTTAGGACACTCGGGCATGATCAGGCAGAGA
GGGGGAGGGGACTGTCGCCTGGGCGTTCCGGTGAAGTGGGTCAAGCACCA
ATTGCCTGGGGCAGAGATAGCCTACCAGCTATTTGTCTGTACGAACGTCC
CTCCGGACGGCGTTGAGCATCGAGGATTACCTGGCGGCTCTAAGGAAGCT
AGGGGGAACGTTAGGACACTCGGGCATGATCAGGCAGAGAGGGGGAGGGG
ACTGTCGCCTGGGCGTTCCGGTGAAGTGGGTCAAGCACCAATTGCCTGGG
GCAGAGATAGCCTACCAGGTGTACGGTCGACACAGAGGGAAGTCGGAGTT
GGCGCAGCTATGGAAGGACATGAAGCGGGACACTGTTTCCATCAACGGTC
GGGTGCTCAAGGGGGAGGTGGGCCCCGAGGCCATCGTCGGGGCCCTGATG
CGGTGCATCCTCGCGCAGGTGTACGGTCGACACAGAGGGAAGTCGGAGTT
GGCGCAGCTATGGAAGGACATGAAGCGGGACACTGTTTCCATCAACGGTC
GGGTGCTCAAGGGGGAGGTGGGCCCCGAGGCCATCGTCGGGGCCCTGATG
CGGTGCATCCTCGCGCAGGCTGGGCGACTCCCGGCGTCTGACTCGTTATC
GAAGCTGTCGGAGGCCCAGAGCCTTTTGACCGCACGTGACGTTCTGCTCG
CGTGTGACCGCACCACCTCGGGAGGAGACACCTACCTCGTGGCTGGGCGA
CTCCCGGCGTCTGACTCGTTATCGAAGCTGTCGGAGGCCCAGAGCCTTTT
GACCGCACGTGACGTTCTGCTCGCGTGTGACCGCACCACCTCGGGAGGAG
ACACCTACCTCGTGGCGGACAACCTGTGCCGCAACCCCGACCTAGTGGTC
CTAGTCCCGGCCTCTCAAGAGGCCGAGCCGCTCGAGATACAAGTTACCCT
CCACCCTCGCGTTCCGGCGAAAGCCCCACCGTGGTCTCGTAGAGGAAACT
CGGGCGACCGTCCGCTTGTGAGCATGTGTTCTCCCGAGCTTCCGACGACC
CCTCTTTCGGCGTCTCCCATTGGGGCTCGTTTGCCCCTGGCACCACCGGA
CACTCCTACGCCCCCATCGATGAACTTATGCCATAACTCTAGGGGACATA
AATATAAGAAGACTGCTGGGTTGGTGCGCGATCGATACGCGAAGCCGAGC
ATAGAGCTGGATCATTTTATTGGCGGAAGGTCAACCGACGCCAGGTCAAG
CGGTGCTAGATCAGTCGGCGGCAGCGGTATATTTACTTCTTTCGCGCGAC
GGTGGGGTGGCCGCACCTCACAGGGAATCCATTCGCGAGAAGGCTCCAGT
ACATCGACTACGCCGAGCATGGTGGACGACACTTCAGCGGGTCGAGAGGA
ATCGAGGATGGGCCGTGGACCAGCCTTCGCCTCCGCTGGGGCAACAACGT
CGCGATCTTTGTTTGTCGAGGACACCACCGATGAAGGCGGGCATGGATCT
GACTCGACGGGGGACGAGAGCACTGGGGACGGGCGATCGAGTCGCAGGAG
TCACATCAGGGTGGCGTGCACAGCGAGGACGTCTTACAAATTGTTTTCGA
GCGATCCTCAGGCGGACAACCTGTGCCGCAACCCCGACCTAGTGGTCCTA
GTCCCGGCCTCTCAAGAGGCCGAGCCGCTCGAGATACAAGTTACCCTCCA
CCCTCGCGTTCCGGCGAAAGCCCCACCGTGGTCTCGTAGAGGAAACTCGG
GCGACCGTCCGCTTGTGAGCATGTGTTCTCCCGAGCTTCCGACGACCCCT
CTTTCGGCGTCTCCCATTGGGGCTCGTTTGCCCCTGGCACCACCGGACAC
TCCTACGCCCCCATCGATGAACTTATGCCATAACTCTAGGGGACATAAAT
ATAAGAAGACTGCTGGGTTGGTGCGCGATCGATACGCGAAGCCGAGCATA
GAGCTGGATCATTTTATTGGCGGAAGGTCAACCGACGCCAGGTCAAGCGG
TGCTAGATCAGTCGGCGGCAGCGGTATATTTACTTCTTTCGCGCGACGGT
GGGGTGGCCGCACCTCACAGGGAATCCATTCGCGAGAAGGCTCCAGTACA
TCGACTACGCCGAGCATGGTGGACGACACTTCAGCGGGTCGAGAGGAATC
GAGGATGGGCCGTGGACCAGCCTTCGCCTCCGCTGGGGCAACAACGTCGC
GATCTTTGTTTGTCGAGGACACCACCGATGAAGGCGGGCATGGATCTGAC
TCGACGGGGGACGAGAGCACTGGGGACGGGCGATCGAGTCGCAGGAGTCA
CATCAGGGTGGCGTGCACAGCGAGGACGTCTTACAAATTGTTTTCGAGCG
ATCCTCAGGATGAACGAGACGTGTATGCCCTGATAACCGGCCTGTTCGAA
CAGACCTTCACGATTTCGAGGGAACTTCCCGCTGGCATCGGAAGACGAAC
CGCCTCTGGGATTGGTACTGCCACATATACCGAAGGGATGAACGAGACGT
GTATGCCCTGATAACCGGCCTGTTCGAACAGACCTTCACGATTTCGAGGG
AACTTCCCGCTGGCATCGGAAGACGAACCGCCTCTGGGATTGGTACTGCC
ACATATACCGAAGGGAGCGTTGCGTTTCTTACTTTCAGAGAGCCCCATAT
CAGGCGCGAAAGCATCGAGCGTTGCGTTTCTTACTTTCAGAGAGCCCCAT
ATCAGGCGCGAAAGCATC
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