mRNA_H-elongata_contig133173.2359.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133173.2359.1
Unique NamemRNA_H-elongata_contig133173.2359.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig133173.2359.1 vs. uniprot
Match: A0A6H5L969_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L969_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.780e-43
Identity = 84/184 (45.65%), Postives = 116/184 (63.04%), Query Frame = 1 
Query:    1 RVLVVPDKISRGGKDGDARLRYVLATVHEAFDPDFVFFCNEHTFVIADNLRCFVQGFNPAEAVYVQNQFRENDGLPWIDPETDKVMLNSGAGGVVLSLGSLEVLQRAWKLIEPSS-PDGAKKAIRSSSTLSKTADEAR---LACLARSDFERDNPGVTLARCLEHFGVKAQDSVDDEVGVRFRS 540
            RVLVVPD ++RGG DGD RLRYVLA + E +DP F+F+CNEHT+VIA+NL C+ +  +P++ VY+ N+FR        + +  K +LNSGA G +LS GSL +L +AW+  E     D    ++  S   S    E R     C+A+S++ER NPG+TLARCL H  V A D+   + G RF +
Sbjct:  175 RVLVVPDDVTRGGTDGDGRLRYVLARISEIYDPAFLFYCNEHTYVIAENLLCYTRSLDPSDPVYLGNRFRRES-----ERDQGKALLNSGAAGFILSRGSLSLLHQAWRDGEGGGRADSLGGSVDHSGGHSDGKGEERGPPTECVAKSNYERGNPGITLARCLAHLRVYAMDTTGSQGGQRFNA 353
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BLAST of mRNA_H-elongata_contig133173.2359.1 vs. uniprot
Match: D7FS30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS30_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.490e-36
Identity = 72/164 (43.90%), Postives = 104/164 (63.41%), Query Frame = 1 
Query:   61 RYVLATVHEAFDPDFVFFCNEHTFVIADNLRCFVQGFNPAEAVYVQNQFRENDGLPWIDPETDKVMLNSGAGGVVLSLGSLEVLQRAWKLIEPSS-PDGAKKAIRSSSTLSKTADEAR---LACLARSDFERDNPGVTLARCLEHFGVKAQDSVDDEVGVRFRS 540
            RYVLA ++E +DPDF+F+CNEHT+VIA+NL+C+ +  +P++ VY+ N+FR        +    K +LNSGA G VLS GSL +L +AW+  E     D    ++  S   S    E R     C+A+S++ER NPG+TLARCL H GV A+D+  ++ G RF +
Sbjct:   35 RYVLARIYEIYDPDFLFYCNEHTYVIAENLQCYTRSLDPSDPVYLGNRFRREG-----EKNQGKALLNSGAAGFVLSRGSLSLLHQAWRGGEGGGRADSLGGSVDHSGGHSDGEGEERGPPTECVAKSNYERGNPGITLARCLAHLGVYAKDTTGNQGGQRFNA 193
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BLAST of mRNA_H-elongata_contig133173.2359.1 vs. uniprot
Match: A0A7S4J8K6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J8K6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.480e-10
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 1 
Query:    1 RVLVVPDKISRGGKDGDARLRYVLATVHEAFDPDFVFFCNEHTFVIADNLRCFVQGFNPAEAVYVQNQFRENDGLPWIDPETDKVMLNSGAGGVVLSLGSLEVLQRAWKLIEP 339
            ++LV+P+ I    + G  RL++ + T+H+A +PDF FF N+HTFV+ ++L  F+ G +P   +Y  +  +          E +    NSGA G VLS  ++  L + W   +P
Sbjct:  226 QLLVLPESIKE--ESGVLRLQHTVRTIHDAINPDFAFFVNDHTFVMPEHLCLFLSGRDPTRELYAGHAMKN---------EKEGYAFNSGAAGYVLSKRTMGDLVKKWDEKDP 327
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BLAST of mRNA_H-elongata_contig133173.2359.1 vs. uniprot
Match: K0TD75_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TD75_THAOC)

HSP 1 Score: 53.5 bits (127), Expect = 3.540e-5
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 1 
Query:    1 RVLVVPDKISRGGKDGDARLRYVLATVHEAFDPDFVFFCNEHTFVIADNLRCFVQGFNPAEAVYVQNQFRENDGLPWIDPETDKVMLNSGAGGVVLS 291
            +VL +P  I      G  RL Y + TV E  +P F+FF N+HTFV+ ++L  F+Q  + ++  YV +  +   G P        V  NSGA G VLS
Sbjct:  143 QVLKLPSDIKVD--QGVERLLYSIRTVSETVNPSFIFFTNDHTFVLPNHLCRFLQKRDASKDAYVGHALK-GKGTP--------VAFNSGAAGYVLS 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133173.2359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L969_9PHAE1.780e-4345.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS30_ECTSI2.490e-3643.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4J8K6_9STRA1.480e-1032.74Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
K0TD75_THAOC3.540e-537.11Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133173contigH-elongata_contig133173:195..1320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue1e-29
Seed eggNOG ortholog2880.D7FS30
EggNOG free text desc.glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity
EggNOG OGsKOG2246@1,KOG2246@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-16_004550.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size540
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133173.2359.1prot_H-elongata_contig133173.2359.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133173 195..1320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.8641527-CDS-H-elongata_contig133173:194..2801622929789.8641527-CDS-H-elongata_contig133173:194..280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133173 195..280 -
1691679158.4162688-CDS-H-elongata_contig133173:194..2801691679158.4162688-CDS-H-elongata_contig133173:194..280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133173 195..280 -
1622929789.8789668-CDS-H-elongata_contig133173:465..6791622929789.8789668-CDS-H-elongata_contig133173:465..679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133173 466..679 -
1691679158.4254134-CDS-H-elongata_contig133173:465..6791691679158.4254134-CDS-H-elongata_contig133173:465..679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133173 466..679 -
1622929789.8940585-CDS-H-elongata_contig133173:1080..13201622929789.8940585-CDS-H-elongata_contig133173:1080..1320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133173 1081..1320 -
1691679158.4327943-CDS-H-elongata_contig133173:1080..13201691679158.4327943-CDS-H-elongata_contig133173:1080..1320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133173 1081..1320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133173.2359.1

>prot_H-elongata_contig133173.2359.1 ID=prot_H-elongata_contig133173.2359.1|Name=mRNA_H-elongata_contig133173.2359.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
RVLVVPDKISRGGKDGDARLRYVLATVHEAFDPDFVFFCNEHTFVIADNL
RCFVQGFNPAEAVYVQNQFRENDGLPWIDPETDKVMLNSGAGGVVLSLGS
LEVLQRAWKLIEPSSPDGAKKAIRSSSTLSKTADEARLACLARSDFERDN
PGVTLARCLEHFGVKAQDSVDDEVGVRFRS
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mRNA from alignment at H-elongata_contig133173:195..1320-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133173.2359.1 ID=mRNA_H-elongata_contig133173.2359.1|Name=mRNA_H-elongata_contig133173.2359.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-elongata_contig133173:195..1320- (Himanthalia elongata Himel1 dioecious)
CGGGTACTCGTGGTGCCCGACAAAATTTCGCGCGGCGGGAAAGACGGAGA
CGCGCGTCTGCGATACGTTTTGGCCACGGTACACGAGGCGTTCGATCCTG
ACTTCGTCTTCTTTTGCAATGAGCACACCTTCGTGATCGCGGATAATCTG
CGCTGCTTCGTACAAGGGTTTAACCCTGCTGAAGCTGTTTACGTCCAGAA
TCAGTTCCGGGAAAACGATGGTCTTCCATGGATCGATCCAGTCGGCAACG
TCACGGCCAGTAGGGTAAGGGGGTTCACGGTGAACGCTCGTGCTTGTACC
AGGCCTTGATCAATAGAGGGTTTTCCCGGTTCGGCTGTAATATGCACATA
TATTATACATGCCTCGGAGTGTTGTGATGACCTCATAAAGCTCCCTGCTA
CTATACAACTTATATTATTATACCGTTGTGCTGTTGATTCGCCCACCAGA
GCCATTCGTTCACGATTTGCTTCATAAGCATTTTGTTATGGCATTTTGAT
GACATCCATCCATTACCATCGCGTTACCCTCCTGCCCTATGATATCCCCC
CTCTTCCGCCTAAATATCTCGCTCTACTTACTACATAACATGCCCATGAA
ATTCAATGCCGAACATGAACCGCTCTCCTCGTGTCTAAAAGGAAACGGAC
AAGGTTATGCTCAATTCTGGGGCAGGTGGCGTCGTGCTTAGCCTCGGCTC
CCTTGAGGTACTACAGAGAGCGTGGAAACTGATCGAGCCTTCGTCACCGG
ACGGGGCGAAGAAAGCAATCAGGAGCAGCTCAACCCTTTCAAAAACAGCA
GACGAAGCTCGTTTGGCATGCTTGGCGAGGTCGGACTTTGAACGAGATAA
TCCAGGTACAGTGAGTCACCTCGGAGAGTAAAACGACCCCTACCCGAGTT
CGAGGAGGTGAAAATAATATCCGATTGCGACCCCTCTGAATGCCACCCCA
ACCAACCCCCGTTGAAAAACAATACGAATACGTATGGCTCATTTCAGAAG
TTCCCAAAATCTGCCATTTGTTTTCTTCGTACGTTTCCAGGTGTCACGTT
GGCCCGCTGCCTCGAGCACTTCGGCGTGAAGGCTCAGGATAGTGTAGATG
ACGAGGTAGGCGTGAGGTTTAGAAGC
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Coding sequence (CDS) from alignment at H-elongata_contig133173:195..1320-

>mRNA_H-elongata_contig133173.2359.1 ID=mRNA_H-elongata_contig133173.2359.1|Name=mRNA_H-elongata_contig133173.2359.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig133173:195..1320- (Himanthalia elongata Himel1 dioecious)
CGGGTACTCGTGGTGCCCGACAAAATTTCGCGCGGCGGGAAAGACGGAGA
CGCGCGTCTGCGATACGTTTTGGCCACGGTACACGAGGCGTTCGATCCTG
ACTTCGTCTTCTTTTGCAATGAGCACACCTTCGTGATCGCGGATAATCTG
CGCTGCTTCGTACAAGGGTTTAACCCTGCTGAAGCTGTTTACGTCCAGAA
TCAGTTCCGGGAAAACGATGGTCTTCCATGGATCGATCCACGGGTACTCG
TGGTGCCCGACAAAATTTCGCGCGGCGGGAAAGACGGAGACGCGCGTCTG
CGATACGTTTTGGCCACGGTACACGAGGCGTTCGATCCTGACTTCGTCTT
CTTTTGCAATGAGCACACCTTCGTGATCGCGGATAATCTGCGCTGCTTCG
TACAAGGGTTTAACCCTGCTGAAGCTGTTTACGTCCAGAATCAGTTCCGG
GAAAACGATGGTCTTCCATGGATCGATCCAGAAACGGACAAGGTTATGCT
CAATTCTGGGGCAGGTGGCGTCGTGCTTAGCCTCGGCTCCCTTGAGGTAC
TACAGAGAGCGTGGAAACTGATCGAGCCTTCGTCACCGGACGGGGCGAAG
AAAGCAATCAGGAGCAGCTCAACCCTTTCAAAAACAGCAGACGAAGCTCG
TTTGGCATGCTTGGCGAGGTCGGACTTTGAACGAGATAATCCAGGAAACG
GACAAGGTTATGCTCAATTCTGGGGCAGGTGGCGTCGTGCTTAGCCTCGG
CTCCCTTGAGGTACTACAGAGAGCGTGGAAACTGATCGAGCCTTCGTCAC
CGGACGGGGCGAAGAAAGCAATCAGGAGCAGCTCAACCCTTTCAAAAACA
GCAGACGAAGCTCGTTTGGCATGCTTGGCGAGGTCGGACTTTGAACGAGA
TAATCCAGGTGTCACGTTGGCCCGCTGCCTCGAGCACTTCGGCGTGAAGG
CTCAGGATAGTGTAGATGACGAGGTAGGCGTGAGGTTTAGAAGCGTGTCA
CGTTGGCCCGCTGCCTCGAGCACTTCGGCGTGAAGGCTCAGGATAGTGTA
GATGACGAGGTAGGCGTGAGGTTTAGAAGC
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