mRNA_H-elongata_contig13307.2355.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13307.2355.1
Unique NamemRNA_H-elongata_contig13307.2355.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13307.2355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13307contigH-elongata_contig13307:3454..4101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size648
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13307.2355.1prot_H-elongata_contig13307.2355.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13307 3625..4005 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.5298316-UTR-H-elongata_contig13307:3453..36241622929789.5298316-UTR-H-elongata_contig13307:3453..3624Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13307 3454..3624 +
1691679158.28455-UTR-H-elongata_contig13307:3453..36241691679158.28455-UTR-H-elongata_contig13307:3453..3624Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13307 3454..3624 +
1622929789.5563698-UTR-H-elongata_contig13307:4005..41011622929789.5563698-UTR-H-elongata_contig13307:4005..4101Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13307 4006..4101 +
1691679158.3008084-UTR-H-elongata_contig13307:4005..41011691679158.3008084-UTR-H-elongata_contig13307:4005..4101Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13307 4006..4101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.5448418-CDS-H-elongata_contig13307:3624..40051622929789.5448418-CDS-H-elongata_contig13307:3624..4005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13307 3625..4005 +
1691679158.292417-CDS-H-elongata_contig13307:3624..40051691679158.292417-CDS-H-elongata_contig13307:3624..4005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13307 3625..4005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13307.2355.1

>prot_H-elongata_contig13307.2355.1 ID=prot_H-elongata_contig13307.2355.1|Name=mRNA_H-elongata_contig13307.2355.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MSCFSFTLKCVIIFILIFRLVIVFPGVGLSNDSCFIGSCHRFLGETRLID
SSVFVDWWLRVRRVPSTFPSFVECLKRWFRYLKKVRRRAITRLYRPCFPP
WQEGSDETSGRVVVRYFVPECVIAVG*
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mRNA from alignment at H-elongata_contig13307:3454..4101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13307.2355.1 ID=mRNA_H-elongata_contig13307.2355.1|Name=mRNA_H-elongata_contig13307.2355.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=648bp|location=Sequence derived from alignment at H-elongata_contig13307:3454..4101+ (Himanthalia elongata Himel1 dioecious)
GCTTCTCTAGTGTGTGGGGTCTAACCTACATGCCCTGGTTTAGTGGGAGA
AAACGCCCTGAAAAAGGGATATGGGTCTTATTTGCTTTGATTATGGGTGA
TCGCGGGTTTGTGGGGACAGTCGTATTTAATCAAGCATAGATATGGACAG
GGTTCGAAGCTATACGTATATATGTCTTGTTTCTCATTTACGTTGAAATG
CGTAATCATTTTTATTTTAATATTTCGGTTGGTTATCGTTTTTCCAGGTG
TTGGTTTAAGTAACGACTCTTGTTTCATCGGCAGCTGCCACAGATTTCTG
GGTGAAACGCGACTAATTGATTCTTCAGTCTTTGTTGATTGGTGGCTCCG
CGTTCGCCGTGTTCCATCAACTTTTCCCTCGTTCGTTGAGTGCTTAAAGC
GGTGGTTTCGGTATCTTAAGAAGGTTAGGAGGAGGGCTATCACGCGTCTC
TATCGCCCCTGCTTCCCCCCCTGGCAGGAGGGGTCTGATGAGACGTCAGG
GCGCGTCGTTGTGCGGTATTTCGTACCTGAATGCGTTATCGCGGTAGGCT
AGCTTTTCAAAAAAAGGAAAAGAAAAAAAAAGAGAAAATGTATACGGTCG
TGCTCGCTTTGACGTCCGAGGTCTTAATCTGATAAAATTGTTGTTTAT
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Coding sequence (CDS) from alignment at H-elongata_contig13307:3454..4101+

>mRNA_H-elongata_contig13307.2355.1 ID=mRNA_H-elongata_contig13307.2355.1|Name=mRNA_H-elongata_contig13307.2355.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig13307:3454..4101+ (Himanthalia elongata Himel1 dioecious)
ATGTCTTGTTTCTCATTTACGTTGAAATGCGTAATCATTTTTATTTTAAT
ATTTCGGTTGGTTATCGTTTTTCCAGGTGTTGGTTTAAGTAACGACTCTT
GTTTCATCGGCAGCTGCCACAGATTTCTGGGTGAAACGCGACTAATTGAT
TCTTCAGTCTTTGTTGATTGGTGGCTCCGCGTTCGCCGTGTTCCATCAAC
TTTTCCCTCGTTCGTTGAGTGCTTAAAGCGGTGGTTTCGGTATCTTAAGA
AGGTTAGGAGGAGGGCTATCACGCGTCTCTATCGCCCCTGCTTCCCCCCC
TGGCAGGAGGGGTCTGATGAGACGTCAGGGCGCGTCGTTGTGCGGTATTT
CGTACCTGAATGCGTTATCGCGGTAGGCTAGATGTCTTGTTTCTCATTTA
CGTTGAAATGCGTAATCATTTTTATTTTAATATTTCGGTTGGTTATCGTT
TTTCCAGGTGTTGGTTTAAGTAACGACTCTTGTTTCATCGGCAGCTGCCA
CAGATTTCTGGGTGAAACGCGACTAATTGATTCTTCAGTCTTTGTTGATT
GGTGGCTCCGCGTTCGCCGTGTTCCATCAACTTTTCCCTCGTTCGTTGAG
TGCTTAAAGCGGTGGTTTCGGTATCTTAAGAAGGTTAGGAGGAGGGCTAT
CACGCGTCTCTATCGCCCCTGCTTCCCCCCCTGGCAGGAGGGGTCTGATG
AGACGTCAGGGCGCGTCGTTGTGCGGTATTTCGTACCTGAATGCGTTATC
GCGGTAGGCTAG
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