mRNA_H-elongata_contig13303.2352.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig13303.2352.1 vs. uniprot
Match: D7G867_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G867_ECTSI) HSP 1 Score: 339 bits (870), Expect = 8.830e-100 Identity = 190/366 (51.91%), Postives = 224/366 (61.20%), Query Frame = 1
Query: 598 AEDVERGTHLDNAEINVGIVDSMCPEGERRRRIDNKELDILEIGHPDLFMSDQGNGAPRRLMTVDDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCIDKGPQGGGDPAAAWKDPRIQSSMAR-RTDPP---EVVENKTASDLYTFVWDRLRMVRSDYSMQ------------------------------------------------------------------VKGLASPHEPEITAYYILTVLKQDDGAEVQRCVTDLRKGRRQAVLGSPEVQDALRVVRAWQSEDYVIFFRALREQRIMHRCLLSQYVRSMRHTAIQVIAATFLNLHVLEIKRLLCFESERQTTVFLKAYGLK 1485
AEDV+RG+HLD+A+I G V++MCP E RR+ +L ILE HPD FM D G+G P RL DDLVVKRH RAAAG DISKPELLRTPLWLARTVDHLV+ C+DKGP GGGDPA W DPRIQ MA+ R + P + E +T DLY FVWDR RMVRSDY+MQ GLASP+EPEI AYY+LTVL+QD G EVQR V DL + RR+ VL SPE++ AL+VVRAW + DYV FFRA R+Q +MHRCL+SQYV+ MR +AI+VIA +F + E+ RLLCFESE Q FL Y LK
Sbjct: 239 AEDVQRGSHLDDAKIKQGTVEAMCPPEEMSRRVPG-DLHILEKEHPDFFMPDLGDGGPPRLWLHDDLVVKRHQRAAAGMDISKPELLRTPLWLARTVDHLVMICMDKGPHGGGDPALVWDDPRIQEYMAKFRANNPSRADSAEEETEHDLYNFVWDRFRMVRSDYNMQGYNPVVGLVSEASIVAHERMARWYVLMANRMEKNSMQTHRFNLKSIVETLKKLYEFYTIRVSRGEVSGGLASPNEPEIMAYYLLTVLEQDGGIEVQRLVKDLVRSRREEVLDSPEIRGALKVVRAWHAGDYVTFFRAFRQQGVMHRCLMSQYVKPMRDSAIKVIAQSFADFSTSELMRLLCFESEDQAVDFLMVYSLK 603
BLAST of mRNA_H-elongata_contig13303.2352.1 vs. uniprot
Match: UPI001AADBB62 (germinal-center associated nuclear protein n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AADBB62) HSP 1 Score: 87.0 bits (214), Expect = 3.330e-14 Identity = 97/323 (30.03%), Postives = 137/323 (42.41%), Query Frame = 1
Query: 619 THLDNAEINVGIVDSMCPEGERRRRIDNKELDILEIGHPDLFMSDQGNGAPRRLMTVDDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCIDKGPQGGGD-PAAAWK---------------DPRIQSSMARRT------------DPPEVVENKTASDLYTFVWDRLRMVRSDYSMQVKGLASPHEPEITAYYILTVLKQDDGAEVQRCVTDLRKGRRQAVLGSPEVQDALRVVRAWQSEDYVIFFRALREQRIMHRCLLSQYVRSMRHTAIQV--IAATFL----NLHVLE-IKRLLCFESERQTTVFLKAYGL 1482
T LD A + VG MCPE ER R +L I EI L SD+ + A +K + R++A + P LR L T+D+LV + +D G D W DP S M + +P E K ++ T L+ + D + +G P EPE Y +L L + D + R V ++ +V S EV+ AL+V A+ S +YV FF+ +R ++ C+L Y +R A+QV IA TF L LE + RLL F+ Q T FL AYGL
Sbjct: 977 TELDQANVFVGTCQDMCPEKERYMRETRNQLSIFEI----LPGSDKIDHAT---------AIKEYSRSSADQEEPLPHELRPLPVLCMTMDYLVTYIMDNGENNYRDWYDFVWNRTRGIRKDITQQHLCDPVTVSLMEKCMRFHIHCAYELCEEPMSAFEPKINNENLTKCLQSLKEMYQD--LHNRGETCPCEPEFRGYSVLLNLNKGD---ILREVQQFQE----SVRNSAEVKFALQVFSAFNSTNYVRFFKLVRSSSYLNSCILHGYFGQIRRRALQVMNIAYTFSPQRPTLFPLEEVVRLLLFQDADQATGFLTAYGL 1277
BLAST of mRNA_H-elongata_contig13303.2352.1 vs. uniprot
Match: A0A5J4Z7I1_PORPP (Germinal-center associated nuclear protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7I1_PORPP) HSP 1 Score: 84.7 bits (208), Expect = 1.730e-13 Identity = 93/346 (26.88%), Postives = 147/346 (42.49%), Query Frame = 1
Query: 625 LDNAEINVGIVDSMCPEGERRRRIDNKELDILEIGHPDLFMSDQGNGAPRRLMTVDDL-VVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCIDKGPQGGGDPAAAWKDPRIQSSMARRTDPPEVVENKTASDLYTFVWDRLRMVRSDYSMQVKGLASP-----HEPEITAYYILTV--LKQDDGA---------EVQRCVTDLRK-------------------GRRQA-------------------VLGSPEVQDALRVVRAWQSEDYVIFFRALREQRIMHRCLLSQYVRSMRHTAIQVIA----ATFLNLHVLEIKRLLCFESERQTTVFLKAYGLK 1485
L+ +E VG MCP ER R + ++L I EI G GA VD VK++ R+AA ++ ++PE +R P L RT+D+L+ +DKG + T D++ FV DR R +R D++ Q G+ S HE E ++IL+ L+ +D + ++++C+T LR+ G A VL SP + A+R + A + +D+ FF LR + CLL + + MRHTA+ +A +T ++ + E+ RLL S FL+ YGL+
Sbjct: 476 LEQSECLVGTCLDMCPAKERIDRQEQRDLSIFEIL--------PGTGANGEASLVDHAHAVKKYARSAAASEAARPEQIRPPQVLVRTMDYLIDEILDKGERN--------------------------FAGATFVDVHNFVRDRTRSIRQDFTYQ--GIRSMDCVRVHE-EAVRFHILSEFELRAEDPSVFSSAQNMEQLKKCLTSLREMYGELRRTQDQHAISGLHEGEMTAYQVVLTGDLQGLLRMLDAEVLASPLITLAVRALVAEKQKDFWTFFHVLRMSPYLMACLLYKMLDGMRHTALMCLAKASRSTKDSMTLGELVRLLDLASVDDGIQFLEHYGLE 784
BLAST of mRNA_H-elongata_contig13303.2352.1 vs. uniprot
Match: UPI00085440EF (germinal-center associated nuclear protein n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI00085440EF) HSP 1 Score: 84.3 bits (207), Expect = 2.250e-13 Identity = 95/323 (29.41%), Postives = 139/323 (43.03%), Query Frame = 1
Query: 619 THLDNAEINVGIVDSMCPEGERRRRIDNKELDILEIGHPDLFMSDQGNGAPRRLMTVDDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCIDKGPQGGGD-PAAAWK---------------DPRIQSSMARRT------------DPPEVVENKTASDLYTFVWDRLRMVRSDYSMQVKGLASPHEPEITAYYILTVLKQDDGAEVQRCVTDLRKGRRQAVLGSPEVQDALRVVRAWQSEDYVIFFRALREQRIMHRCLLSQYVRSMRHTAIQV--IAATFL----NLHVLE-IKRLLCFESERQTTVFLKAYGL 1482
T LD A++ VG MCPE ER R +L I EI L SD+ + A +K + R++A + P LR L T+D+LV + +D G D W DP S M + +P E K ++ T L+ + D + +G P EPE Y +L L + D + R V ++ +V S EV+ A++V A+ S +YV FF+ +R ++ C+L Y +R +A+QV +A TF +L LE I RLL F+ Q FL AYGL
Sbjct: 336 TELDQAKVFVGTCPDMCPEKERYMRETRNQLSIFEI----LPGSDKADHAA---------AIKEYSRSSADQEEPLPHELRPLPVLCMTMDYLVNYIMDHGENNYRDWYDFVWNRTRGIRKDITQQHLCDPVTVSLMEKCMRFHIHCAYELCEEPMSSFEPKINNENLTKCLLSLKEMYQD--LHNRGETCPCEPEFRGYSVLLNLNKGD---ILREVQQFKE----SVRNSAEVKFAVQVFAAFNSTNYVHFFKLVRSASYLNSCILHGYFSQIRRSALQVLNVAYTFSPQRPSLFPLEEIMRLLLFQDADQAAEFLTAYGL 636
BLAST of mRNA_H-elongata_contig13303.2352.1 vs. uniprot
Match: A0A397A3B7_9STRA (SAC3_GANP domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A3B7_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.370e-12 Identity = 88/337 (26.11%), Postives = 134/337 (39.76%), Query Frame = 1
Query: 604 DVERGTHLDNAEINVGIVDSMCPEGERRRRIDNKELDILEIGHPDLFMSDQGNGAPRRLMTVDDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCIDKGPQGGGDPAAAWKDPRIQSSMARRTDPPEVVENKTASDLYTFVWDRLRMVRSDYSMQ-------------------------------------------VKGLASPHEPEITAYYILTVLKQDDGAEVQRCVTDLRKGRRQAVLGSPEVQDALRVVRAWQSEDYVIFFRALREQRIMHRCLLSQYVRSMRHTAIQVIAATFLNLHVLE-IKRLLCFESERQTTVFLKAYGL 1482
DVE+ L +A G+ MC ER +I +L E G+P + ++KR+ R+AA + P +R L T +L H ID G DPR +PP V + DLY F W+R RM+R+D+++Q G +SP E E Y+IL L D + V + L + ++L S VQ A+ A + DYV FFR +R+ ++ CLL +Y R A+ +A + + + LE + RLLCF+S + + +GL
Sbjct: 8 DVEK-LDLSSAVTIDGLCVDMCSPKERDEQIRCDDLSTFEKGNPP-----------------EAFIIKRYQRSAADHKLDIPSEIRPLGVLRMTQLYLEQHVIDLDECG--------PDPRF--------NPPRVPD---FLDLYNFFWNRARMIRNDFTLQNYRGGGRHHVIAMDVHERIARFFILCEHELIENPKFIEQQNMEQLGKSSPFEAEFAGYFIL--LHLDKASAVLKFTKRLPR----SILHSTFVQFAMAAFVARHTNDYVAFFRLVRQASLLQACLLHRYFPLARSDALGCMARVYRHPYPLEPLVRLLCFDSLQHAATVVGLHGL 301
BLAST of mRNA_H-elongata_contig13303.2352.1 vs. uniprot
Match: A0A397DI83_9STRA (SAC3_GANP domain-containing protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DI83_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 5.800e-12 Identity = 88/337 (26.11%), Postives = 134/337 (39.76%), Query Frame = 1
Query: 604 DVERGTHLDNAEINVGIVDSMCPEGERRRRIDNKELDILEIGHPDLFMSDQGNGAPRRLMTVDDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCIDKGPQGGGDPAAAWKDPRIQSSMARRTDPPEVVENKTASDLYTFVWDRLRMVRSDYSMQ-------------------------------------------VKGLASPHEPEITAYYILTVLKQDDGAEVQRCVTDLRKGRRQAVLGSPEVQDALRVVRAWQSEDYVIFFRALREQRIMHRCLLSQYVRSMRHTAIQVIAATFLNLHVLE-IKRLLCFESERQTTVFLKAYGL 1482
DVE+ L +A G+ MC ER +I +L E G+P + ++KR+ R+AA + P +R L T +L H ID G DPR +PP V + DLY F W+R RM+R+D+++Q G +SP E E Y+IL L D + V + L + ++L S VQ A+ A + DYV FFR +R+ ++ CLL +Y R A+ +A + + + LE + RLLCF+S + + +GL
Sbjct: 8 DVEK-LDLSSAVTIDGLCVDMCSPKERDEQIRCDDLSTFEKGNPP-----------------EAFIIKRYQRSAADHKLDIPSEIRPLGVLRMTQLYLEQHVIDLDECG--------PDPRF--------NPPRVPD---FLDLYNFFWNRARMIRNDFTLQNYRGGGRHHVIAMDVHERIARFFILCEHELIENPKFIEQQNMEQLGKSSPFEAEFAGYFIL--LHLDKASAVLKFTKRLPR----SLLHSTFVQFAMAAFVARHTNDYVAFFRLVRQASLLQACLLHRYFPLARSDALGCMARVYRHPYPLEPLVRLLCFDSLQHAATVVGLHGL 301
BLAST of mRNA_H-elongata_contig13303.2352.1 vs. uniprot
Match: A0A1E1X5W6_9ACAR (Putative nuclear protein export factor (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1X5W6_9ACAR) HSP 1 Score: 76.3 bits (186), Expect = 7.700e-11 Identity = 88/358 (24.58%), Postives = 127/358 (35.47%), Query Frame = 1
Query: 607 VERGTHLDNAEINVGIVDSMCPEGERRRRIDNKELDILEIGHPDLFMSDQGNGAPRRLMTVDDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCIDKGP--QGGGDPAAAWKDPRIQSSMARRTDPPEVVENKTASDLYTFVWDRLRMVRSD---------------------------------------------------------YSMQVKGLASPHEPEITAYYILTVLKQDDGAEVQRCVTDLRKGRRQAVLGSPEVQDALRVVRAWQSEDYVIFFRALREQRIMHRCLLSQYVRSMRHTAIQVIAATFLNLHVLE------IKRLLCFESERQTTVFLKAYGLK 1485
+E+ + L A G MCPE ER R D K L E+ L SD R +VK + R++A + LR P L T+D+L++H +D GGG T PP + Y F+W+R R +R D Y + +KGL P+EPE AY +L L Q D + + D V SP+V+ A+ A+ S +YV FFR E + CL+ +Y +R A+Q F H E + + L F+S + F GL+
Sbjct: 657 LEKQSDLATARATKGCCPDMCPEKERYSRTDKKCLSTFEV----LPGSDGVMDHTR--------MVKEYSRSSADQEEPLAHELRPPHVLRHTMDYLIVHLMDYSALASGGG------------------TVPP-------VGEWYDFIWNRTRSIRKDITQQHLCDEACVALVEQCARFHIHCAAALCEEDMSAFDPKINDENLVKCLQTLKHFYYDLSLKGLRCPNEPEFRAYDVLLHLNQGDTIRQVQKLPDW-------VRWSPQVKQAVAAFGAFNSNNYVRFFRLGAEASYLAACLMHRYFGQVRVRALQTFLKAFCQSHQKEEFSLEVLGQHLGFDSVSEVQQFASTLGLR 970
BLAST of mRNA_H-elongata_contig13303.2352.1 vs. uniprot
Match: UPI001EE507CC (LOW QUALITY PROTEIN: germinal-center associated nuclear protein-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE507CC) HSP 1 Score: 75.5 bits (184), Expect = 1.460e-10 Identity = 80/322 (24.84%), Postives = 130/322 (40.37%), Query Frame = 1
Query: 622 HLDNAEINVGIVDSMCPEGERRRRIDNKELDILEIGHPDLFMSDQGNGAPRRLMTVDDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCIDKGPQGGGDP--AAAW-------KDPRIQSSMARRT--------------------DPPEVVENKTASDLYTFVWDRLRMVRSDYSMQVKGLASPHEPEITAYYILTVLKQDDGA-EVQRCVTDLRKGRRQAVLGSPEVQDALRVVRAWQSEDYVIFFRALREQRIMHRCLLSQYVRSMRHTAIQVIAATF----LNLHVLEIKRLLCFESERQTTVFLKAYGLK 1485
+L A VG MCPE ER R + + L + E ++ N + VVK + R++A D P LR L RT+D+L+ DKG G W KD Q M R + V + K ++ T L+ + D ++ + P E E A+ +L L + D EVQ +++R S E++ ++V A S +YV FFR ++E ++ C++ +Y +R A+Q + F + E+ R+L F++ + F + YGLK
Sbjct: 866 NLATARAFVGTCMDMCPEKERYDREEKRRLGMFE------YVPGSENIPGQNPRADHSRVVKEYSRSSADQDEPLPHELRPIPVLVRTMDYLLTEIADKGTDGRWMDWYGFLWDRTRGIRKDITQQQLMNREAVELLEKCARFHIFCSERLCEEDMHVFDEKINNENLTKCLQTLKEMYHDLDVKHQVFC-PSEAEFRAFIVLMNLNEGDTLREVQTLRSEVRT--------STEIKFVIKVYTALNSNNYVRFFRLMKESSFLNACIIHRYFTQVRSRALQTMIKAFGGKKSQFPLTELVRILSFDNVNEAAAFCQFYGLK 1172
BLAST of mRNA_H-elongata_contig13303.2352.1 vs. uniprot
Match: UPI00201FB359 (germinal-center associated nuclear protein-like isoform X13 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201FB359) HSP 1 Score: 72.8 bits (177), Expect = 9.610e-10 Identity = 76/323 (23.53%), Postives = 129/323 (39.94%), Query Frame = 1
Query: 619 THLDNAEINVGIVDSMCPEGERRRRIDNKELDILEIGHPDLFMSDQGNGAPRRLMTVDDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCIDKGPQGGG--------DPAAAWKDPRIQSSMARRT---------------------DPPEVVENKTASDLYTFVWDRLRMVRSDYSMQVKGLASPHEPEITAYYILTVLKQDDGA-EVQRCVTDLRKGRRQAVLGSPEVQDALRVVRAWQSEDYVIFFRALREQRIMHRCLLSQYVRSMRHTAIQVIAATF----LNLHVLEIKRLLCFESERQTTVFLKAYGLK 1485
++L A VG MCPE ER R + + L + E ++ N + VVK + R++A D P LR L RT+D+L+ DKG G D + Q + R + V + K ++ T L+ + D ++ + P+E E A+ +L L + D EVQ +++R S E++ ++V A S +YV FFR ++E ++ C++ +Y +R A+Q + F + E+ R+L F+ + F YGL+
Sbjct: 170 SNLATARAFVGTCMDMCPEKERYDREEKRRLGMFE------YVPGSENIPGQNPRADHSRVVKEYSRSSADQDEPLPHELRPIPVLVRTMDYLLTEIADKGTDGRWMDWYGFLWDRTRGIRKDITQQQLINREAVELLEKCARFHIFCSERLCEEDMHVFDEKINNENLTKCLQTLKEMYHDLDVKHQVFC-PNEAEFRAFIVLMNLNEGDTLREVQTLRSEVRN--------SWEIKFVIKVYTALNSNNYVRFFRLVKESSFLNACIIHRYFTQVRSLALQTMIKAFGGKKSQFPLTELVRILSFDDVNEAAAFCSFYGLR 477
BLAST of mRNA_H-elongata_contig13303.2352.1 vs. uniprot
Match: UPI00201F4885 (germinal-center associated nuclear protein-like isoform X1 n=18 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F4885) HSP 1 Score: 72.8 bits (177), Expect = 1.030e-9 Identity = 76/323 (23.53%), Postives = 129/323 (39.94%), Query Frame = 1
Query: 619 THLDNAEINVGIVDSMCPEGERRRRIDNKELDILEIGHPDLFMSDQGNGAPRRLMTVDDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCIDKGPQGGG--------DPAAAWKDPRIQSSMARRT---------------------DPPEVVENKTASDLYTFVWDRLRMVRSDYSMQVKGLASPHEPEITAYYILTVLKQDDGA-EVQRCVTDLRKGRRQAVLGSPEVQDALRVVRAWQSEDYVIFFRALREQRIMHRCLLSQYVRSMRHTAIQVIAATF----LNLHVLEIKRLLCFESERQTTVFLKAYGLK 1485
++L A VG MCPE ER R + + L + E ++ N + VVK + R++A D P LR L RT+D+L+ DKG G D + Q + R + V + K ++ T L+ + D ++ + P+E E A+ +L L + D EVQ +++R S E++ ++V A S +YV FFR ++E ++ C++ +Y +R A+Q + F + E+ R+L F+ + F YGL+
Sbjct: 896 SNLATARAFVGTCMDMCPEKERYDREEKRRLGMFE------YVPGSENIPGQNPRADHSRVVKEYSRSSADQDEPLPHELRPIPVLVRTMDYLLTEIADKGTDGRWMDWYGFLWDRTRGIRKDITQQQLINREAVELLEKCARFHIFCSERLCEEDMHVFDEKINNENLTKCLQTLKEMYHDLDVKHQVFC-PNEAEFRAFIVLMNLNEGDTLREVQTLRSEVRN--------SWEIKFVIKVYTALNSNNYVRFFRLVKESSFLNACIIHRYFTQVRSLALQTMIKAFGGKKSQFPLTELVRILSFDDVNEAAAFCSFYGLR 1203 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13303.2352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13303.2352.1 >prot_H-elongata_contig13303.2352.1 ID=prot_H-elongata_contig13303.2352.1|Name=mRNA_H-elongata_contig13303.2352.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=495bp GNGGGLAGVEKSPFNSTRTTSAGGGMGEGFGMKPGGETSRSWATGGKTPPback to top mRNA from alignment at H-elongata_contig13303:2308..7920+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13303.2352.1 ID=mRNA_H-elongata_contig13303.2352.1|Name=mRNA_H-elongata_contig13303.2352.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5613bp|location=Sequence derived from alignment at H-elongata_contig13303:2308..7920+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13303:2308..7920+ >mRNA_H-elongata_contig13303.2352.1 ID=mRNA_H-elongata_contig13303.2352.1|Name=mRNA_H-elongata_contig13303.2352.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2970bp|location=Sequence derived from alignment at H-elongata_contig13303:2308..7920+ (Himanthalia elongata Himel1 dioecious)back to top |