mRNA_H-elongata_contig13303.2351.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13303.2351.1
Unique NamemRNA_H-elongata_contig13303.2351.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13303.2351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13303contigH-elongata_contig13303:1435..2172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size740
Cds size603
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.2348802-UTR-H-elongata_contig13303:1434..15691622929789.2348802-UTR-H-elongata_contig13303:1434..1569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13303 1435..1569 +
1691679158.163719-UTR-H-elongata_contig13303:1434..15691691679158.163719-UTR-H-elongata_contig13303:1434..1569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13303 1435..1569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.2546058-CDS-H-elongata_contig13303:1569..21721622929789.2546058-CDS-H-elongata_contig13303:1569..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13303 1570..2172 +
1691679158.1790206-CDS-H-elongata_contig13303:1569..21721691679158.1790206-CDS-H-elongata_contig13303:1569..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13303 1570..2172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13303.2351.1prot_H-elongata_contig13303.2351.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13303 1570..2172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13303.2351.1

>prot_H-elongata_contig13303.2351.1 ID=prot_H-elongata_contig13303.2351.1|Name=mRNA_H-elongata_contig13303.2351.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp
MFGSAITKIDESSSSRGRDGTGEGARNEVSSEKRVQTGAFAIRADASRPV
APPMSESSTLIGGPNIFPRSDTSSPTTIISGGLRKSPLTSSAASEATASG
GFGLGSGFASFASRAPAWPVSEEKSNIFWTSGDTRGRGTEGGVFSTSRGF
GTSEGFGIRKSSDTGGEFVTGGSLGYATGFGSEGGFGSFVNNAGSGGGSG
G
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mRNA from alignment at H-elongata_contig13303:1435..2172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13303.2351.1 ID=mRNA_H-elongata_contig13303.2351.1|Name=mRNA_H-elongata_contig13303.2351.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=738bp|location=Sequence derived from alignment at H-elongata_contig13303:1435..2172+ (Himanthalia elongata Himel1 dioecious)
AGCAGACCCTGTCAAGAGCAGGGAATGACCACGCCTCCTAGAAAAGGACA
AAGGCGTAAACTTAGGTTACTAGCTTACCTGTTGGTGGCTTGTATCCACG
AAGGTTAAACGTGCTTCGGTTTTACCAAAGTCAAAATGTTCGGGTCTGCC
ATCACGAAAATCGACGAGAGCAGCTCCTCCCGAGGACGAGATGGGACGGG
AGAAGGGGCAAGGAATGAAGTATCATCAGAAAAAAGAGTGCAGACTGGAG
CTTTTGCCATTCGCGCTGATGCGTCAAGACCTGTAGCTCCACCAATGTCG
GAATCGTCGACCTTGATCGGTGGACCCAACATTTTTCCCAGGAGCGATAC
CAGTAGTCCCACCACTATCATTAGTGGGGGCCTAAGGAAGTCACCTTTGA
CCTCATCGGCCGCCTCTGAAGCAACCGCTTCTGGTGGATTCGGCTTGGGA
TCAGGTTTCGCTTCCTTTGCCAGCAGAGCTCCTGCGTGGCCGGTGTCAGA
GGAAAAATCCAATATTTTTTGGACTAGTGGTGACACTAGAGGCAGGGGTA
CCGAAGGAGGAGTCTTCAGCACATCTCGAGGCTTTGGTACCAGTGAAGGA
TTCGGGATTCGAAAAAGCTCCGACACGGGTGGAGAGTTCGTCACTGGAGG
AAGCTTAGGCTATGCGACAGGCTTTGGCTCAGAAGGAGGCTTCGGTAGTT
TCGTAAACAATGCAGGCAGTGGAGGAGGTAGCGGAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig13303:1435..2172+

>mRNA_H-elongata_contig13303.2351.1 ID=mRNA_H-elongata_contig13303.2351.1|Name=mRNA_H-elongata_contig13303.2351.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig13303:1435..2172+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGGGTCTGCCATCACGAAAATCGACGAGAGCAGCTCCTCCCGAGG
ACGAGATGGGACGGGAGAAGGGGCAAGGAATGAAGTATCATCAGAAAAAA
GAGTGCAGACTGGAGCTTTTGCCATTCGCGCTGATGCGTCAAGACCTGTA
GCTCCACCAATGTCGGAATCGTCGACCTTGATCGGTGGACCCAACATTTT
TCCCAGGAGCGATACCAGTAGTCCCACCACTATCATTAGTGGGGGCCTAA
GGAAGTCACCTTTGACCTCATCGGCCGCCTCTGAAGCAACCGCTTCTGGT
GGATTCGGCTTGGGATCAGGTTTCGCTTCCTTTGCCAGCAGAGCTCCTGC
GTGGCCGGTGTCAGAGGAAAAATCCAATATTTTTTGGACTAGTGGTGACA
CTAGAGGCAGGGGTACCGAAGGAGGAGTCTTCAGCACATCTCGAGGCTTT
GGTACCAGTGAAGGATTCGGGATTCGAAAAAGCTCCGACACGGGTGGAGA
GTTCGTCACTGGAGGAAGCTTAGGCTATGCGACAGGCTTTGGCTCAGAAG
GAGGCTTCGGTAGTTTCGTAAACAATGCAGGCAGTGGAGGAGGTAGCGGA
GGAATGTTCGGGTCTGCCATCACGAAAATCGACGAGAGCAGCTCCTCCCG
AGGACGAGATGGGACGGGAGAAGGGGCAAGGAATGAAGTATCATCAGAAA
AAAGAGTGCAGACTGGAGCTTTTGCCATTCGCGCTGATGCGTCAAGACCT
GTAGCTCCACCAATGTCGGAATCGTCGACCTTGATCGGTGGACCCAACAT
TTTTCCCAGGAGCGATACCAGTAGTCCCACCACTATCATTAGTGGGGGCC
TAAGGAAGTCACCTTTGACCTCATCGGCCGCCTCTGAAGCAACCGCTTCT
GGTGGATTCGGCTTGGGATCAGGTTTCGCTTCCTTTGCCAGCAGAGCTCC
TGCGTGGCCGGTGTCAGAGGAAAAATCCAATATTTTTTGGACTAGTGGTG
ACACTAGAGGCAGGGGTACCGAAGGAGGAGTCTTCAGCACATCTCGAGGC
TTTGGTACCAGTGAAGGATTCGGGATTCGAAAAAGCTCCGACACGGGTGG
AGAGTTCGTCACTGGAGGAAGCTTAGGCTATGCGACAGGCTTTGGCTCAG
AAGGAGGCTTCGGTAGTTTCGTAAACAATGCAGGCAGTGGAGGAGGTAGC
GGAGGA
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