mRNA_H-elongata_contig132961.2348.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132961.2348.1
Unique NamemRNA_H-elongata_contig132961.2348.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132961.2348.1 vs. uniprot
Match: A0A7S1TZV2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZV2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.620e-31
Identity = 60/75 (80.00%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 LTLKDGSVHTGVSFGANVSAAGEVVFNTGMVGYPEALTDPSYRGQILVLTYPMVGNYGVPNEADMDEMGLPAHFE 225
            L L DG+  +G SFGA  S AGEVVFNTGMVGYPEALTDPSYRGQILVLTYP+VGNYGVPN+ DMDE  LPAHFE
Sbjct:   75 LVLSDGTEVSGWSFGAEASKAGEVVFNTGMVGYPEALTDPSYRGQILVLTYPLVGNYGVPNDEDMDEYDLPAHFE 149
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BLAST of mRNA_H-elongata_contig132961.2348.1 vs. uniprot
Match: W7U0U1_9STRA (Cad protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0U1_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.430e-30
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 LTLKDGSVHTGVSFGANVSAAGEVVFNTGMVGYPEALTDPSYRGQILVLTYPMVGNYGVPNEADMDEMGLPAHFE 225
            L L DGSVH G  FGA+V  AGEVVFNTGMVGYPEALTDPSYRGQILVLTYPMVGNYGVP+E  +D  GLP +FE
Sbjct:   89 LVLVDGSVHQGFGFGADVPVAGEVVFNTGMVGYPEALTDPSYRGQILVLTYPMVGNYGVPSEDALDAHGLPLYFE 163
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BLAST of mRNA_H-elongata_contig132961.2348.1 vs. uniprot
Match: A0A662ISX0_9CREN (Carbamoyl-phosphate synthase small subunit (Fragment) n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662ISX0_9CREN)

HSP 1 Score: 113 bits (283), Expect = 5.290e-30
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    1 LTLKDGSVHTGVSFGANVSAAGEVVFNTGMVGYPEALTDPSYRGQILVLTYPMVGNYGVPNEADMDEMGLPAHFE 225
            L L+DGSV  G  FG+     GEVVFNTGMVGYPEALTDPSYRGQIL  TYP++GNYGVP+ +D+DE GLP HFE
Sbjct:   16 LVLEDGSVFKGWGFGSPSLVVGEVVFNTGMVGYPEALTDPSYRGQILCFTYPLIGNYGVPSYSDVDEYGLPLHFE 90
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BLAST of mRNA_H-elongata_contig132961.2348.1 vs. uniprot
Match: A0A5A8E0Z2_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E0Z2_CAFRO)

HSP 1 Score: 119 bits (299), Expect = 9.260e-30
Identity = 56/75 (74.67%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:    1 LTLKDGSVHTGVSFGANVSAAGEVVFNTGMVGYPEALTDPSYRGQILVLTYPMVGNYGVPNEADMDEMGLPAHFE 225
            +TL DG+V  G SFGA V+AAGEVVFNT MVGYPEALTDPSYRGQILVLT+P++GNYGVP+ +++DE GLP HFE
Sbjct:   42 ITLADGTVIEGESFGAPVAAAGEVVFNTSMVGYPEALTDPSYRGQILVLTFPLIGNYGVPDMSEVDEWGLPKHFE 116
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BLAST of mRNA_H-elongata_contig132961.2348.1 vs. uniprot
Match: A0A7S3XV13_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV13_HETAK)

HSP 1 Score: 112 bits (280), Expect = 1.040e-29
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    1 LTLKDGSVHTGVSFGANVSAAGEVVFNTGMVGYPEALTDPSYRGQILVLTYPMVGNYGVPNEADMDEMGLPAHFE 225
            L L DG++  G SFGA  S +GEVVFNTGMVGYPE+LTDPSYRGQILVLTYP++GNYGVP+  D DE GLP   E
Sbjct:   40 LELTDGTITKGFSFGATTSMSGEVVFNTGMVGYPESLTDPSYRGQILVLTYPLIGNYGVPSPDDKDEHGLPKFME 114
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BLAST of mRNA_H-elongata_contig132961.2348.1 vs. uniprot
Match: A0A5D6YCR3_9STRA (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=A0A5D6YCR3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.380e-29
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 LTLKDGSVHTGVSFGANVSAAGEVVFNTGMVGYPEALTDPSYRGQILVLTYPMVGNYGVPNEADMDEMGLPAHFE 225
            L L DG+ +TG SFGA  S AGEVVFNTGMVGYPEAL+DPSYRGQILVLTYP++GNYGVP+ A  D+ GLP +FE
Sbjct:   28 LVLADGTTYTGYSFGAQTSMAGEVVFNTGMVGYPEALSDPSYRGQILVLTYPLIGNYGVPDMAVRDDFGLPKYFE 102
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BLAST of mRNA_H-elongata_contig132961.2348.1 vs. uniprot
Match: A0A7S1BAC4_9STRA (Hypothetical protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BAC4_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.380e-29
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 LTLKDGSVHTGVSFGANVSAAGEVVFNTGMVGYPEALTDPSYRGQILVLTYPMVGNYGVPNEADMDEMGLPAHFE 225
            L+L D SVH G +FGA+ S  GEVVFNTGMVGYPEALTDPSYRGQILVLT+P++GNYGVP   +MDE GLP +FE
Sbjct:  180 LSLDDSSVHEGYAFGASTSVHGEVVFNTGMVGYPEALTDPSYRGQILVLTFPLIGNYGVPGGDEMDEHGLPKYFE 254
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BLAST of mRNA_H-elongata_contig132961.2348.1 vs. uniprot
Match: A0A5N5PCB7_PANHP (CPSase_sm_chain domain-containing protein n=1 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=A0A5N5PCB7_PANHP)

HSP 1 Score: 108 bits (270), Expect = 4.980e-29
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 LTLKDGSVHTGVSFGANVSAAGEVVFNTGMVGYPEALTDPSYRGQILVLTYPMVGNYGVPNEADMDEMGL 210
            L L+DG+V  G SFG   SA+GE+VFNTG+VGYPEALTDPSYRGQIL LTYP+VGNYGVPN  ++DE+GL
Sbjct:   35 LVLEDGTVMKGYSFGHGQSASGELVFNTGLVGYPEALTDPSYRGQILTLTYPIVGNYGVPNMQELDEVGL 104
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BLAST of mRNA_H-elongata_contig132961.2348.1 vs. uniprot
Match: A0A8J1ZRX4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1ZRX4_9DINO)

HSP 1 Score: 116 bits (291), Expect = 1.110e-28
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 LTLKDGSVHTGVSFGANVSAAGEVVFNTGMVGYPEALTDPSYRGQILVLTYPMVGNYGVPNEADMDEMGLPAHFE 225
            L L++G  + G SFGA+ S +GEVVFNTGMVGYPEALTDPSY GQILVLTYP++GNYGVPNE  +D +GLP HFE
Sbjct:   56 LVLQNGLEYGGYSFGADCSVSGEVVFNTGMVGYPEALTDPSYTGQILVLTYPLIGNYGVPNEKHVDALGLPKHFE 130
[Close]
BLAST of mRNA_H-elongata_contig132961.2348.1 vs. uniprot
Match: UPI000711FBD4 (carbamoyl phosphate synthase small subunit n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711FBD4)

HSP 1 Score: 108 bits (270), Expect = 1.350e-28
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    1 LTLKDGSVHTGVSFGANVSAAGEVVFNTGMVGYPEALTDPSYRGQILVLTYPMVGNYGVPNEADMDEMGLPAHFE 225
            L L DG+V  G SFG   S +GEVVFNTGMVGYPE+LTDPSYRGQILV T+PMVGNYG+P + ++DE GLP  FE
Sbjct:   27 LVLADGTVFEGYSFGEETSRSGEVVFNTGMVGYPESLTDPSYRGQILVFTFPMVGNYGIPGD-ELDEYGLPKWFE 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132961.2348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1TZV2_9STRA1.620e-3180.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7U0U1_9STRA1.430e-3078.67Cad protein n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
A0A662ISX0_9CREN5.290e-3070.67Carbamoyl-phosphate synthase small subunit (Fragme... [more]
A0A5A8E0Z2_CAFRO9.260e-3074.67Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A7S3XV13_HETAK1.040e-2970.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6YCR3_9STRA4.380e-2973.33Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A7S1BAC4_9STRA4.380e-2973.33Hypothetical protein n=4 Tax=Corethron hystrix Tax... [more]
A0A5N5PCB7_PANHP4.980e-2972.86CPSase_sm_chain domain-containing protein n=1 Tax=... [more]
A0A8J1ZRX4_9DINO1.110e-2872.00Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
UPI000711FBD41.350e-2869.33carbamoyl phosphate synthase small subunit n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132961contigH-elongata_contig132961:921..1145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue4.2e-25
Seed eggNOG ortholog653948.CCA26674
KEGG rclassRC00002,RC00010,RC00043,RC00064,RC00632,RC02750,RC02798,RC02850,RC03314
KEGG koko:K01954,ko:K11540,ko:K11541
KEGG ReactionR00256,R00575,R01395,R01397,R01993,R10948,R10949
KEGG Pathwayko00240,ko00250,ko01100,map00240,map00250,map01100
KEGG ModuleM00051
GOsGO:0000050,GO:0000166,GO:0003674,GO:0003824,GO:0004070,GO:0004087,GO:0004088,GO:0004151,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005951,GO:0006082,GO:0006139,GO:0006206,GO:0006207,GO:0006520,GO:0006525,GO:0006526,GO:0006541,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009112,GO:0009987,GO:0016053,GO:0016597,GO:0016740,GO:0016741,GO:0016743,GO:0016787,GO:0016810,GO:0016812,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019627,GO:0019752,GO:0019856,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046394,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0071941,GO:0072527,GO:0072528,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494
EggNOG free text desc.carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
EggNOG OGsCOG0458@1,KOG0370@2759
EC2.1.3.2,3.5.2.3,6.3.5.5
COG Functional cat.EF
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.007435-CDS-H-elongata_contig132961:920..11451622929789.007435-CDS-H-elongata_contig132961:920..1145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132961 921..1145 -
1691679158.0823274-CDS-H-elongata_contig132961:920..11451691679158.0823274-CDS-H-elongata_contig132961:920..1145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132961 921..1145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132961.2348.1prot_H-elongata_contig132961.2348.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132961 921..1145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132961.2348.1

>prot_H-elongata_contig132961.2348.1 ID=prot_H-elongata_contig132961.2348.1|Name=mRNA_H-elongata_contig132961.2348.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
LTLKDGSVHTGVSFGANVSAAGEVVFNTGMVGYPEALTDPSYRGQILVLT
YPMVGNYGVPNEADMDEMGLPAHFE
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mRNA from alignment at H-elongata_contig132961:921..1145-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132961.2348.1 ID=mRNA_H-elongata_contig132961.2348.1|Name=mRNA_H-elongata_contig132961.2348.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig132961:921..1145- (Himanthalia elongata Himel1 dioecious)
CTCACGCTGAAGGACGGCAGCGTGCACACGGGGGTCAGCTTCGGAGCCAA
CGTCTCTGCGGCGGGAGAGGTGGTGTTCAACACGGGAATGGTTGGCTACC
CGGAGGCCCTGACGGACCCCAGTTATCGGGGCCAGATCCTCGTGCTCACG
TATCCGATGGTGGGAAACTATGGGGTGCCCAACGAGGCGGACATGGACGA
GATGGGCCTTCCGGCACACTTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig132961:921..1145-

>mRNA_H-elongata_contig132961.2348.1 ID=mRNA_H-elongata_contig132961.2348.1|Name=mRNA_H-elongata_contig132961.2348.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig132961:921..1145- (Himanthalia elongata Himel1 dioecious)
CTCACGCTGAAGGACGGCAGCGTGCACACGGGGGTCAGCTTCGGAGCCAA
CGTCTCTGCGGCGGGAGAGGTGGTGTTCAACACGGGAATGGTTGGCTACC
CGGAGGCCCTGACGGACCCCAGTTATCGGGGCCAGATCCTCGTGCTCACG
TATCCGATGGTGGGAAACTATGGGGTGCCCAACGAGGCGGACATGGACGA
GATGGGCCTTCCGGCACACTTCGAGCTCACGCTGAAGGACGGCAGCGTGC
ACACGGGGGTCAGCTTCGGAGCCAACGTCTCTGCGGCGGGAGAGGTGGTG
TTCAACACGGGAATGGTTGGCTACCCGGAGGCCCTGACGGACCCCAGTTA
TCGGGGCCAGATCCTCGTGCTCACGTATCCGATGGTGGGAAACTATGGGG
TGCCCAACGAGGCGGACATGGACGAGATGGGCCTTCCGGCACACTTCGAG
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