mRNA_H-elongata_contig132900.2346.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE) HSP 1 Score: 177 bits (449), Expect = 1.770e-49 Identity = 87/102 (85.29%), Postives = 92/102 (90.20%), Query Frame = 1
Query: 1 RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKVSN 306
RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTL+ET EWR+RK A ++ KLPI ELKKV +
Sbjct: 970 RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWRQRKNALLSKSLAKLPISELKKVDH 1071
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI) HSP 1 Score: 174 bits (442), Expect = 1.550e-48 Identity = 86/99 (86.87%), Postives = 90/99 (90.91%), Query Frame = 1
Query: 1 RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKK 297
RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTL+ET EWR+RK A ++ KLPI ELKK
Sbjct: 880 RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWRQRKNALLSKSLAKLPISELKK 978
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: W7TAC7_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAC7_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 4.230e-22 Identity = 50/110 (45.45%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 25 LFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSEL---------TLRETPG-------EWRRRKAARWEEAFLKLPIPELKKVSN 306
L +AP+C H + +LL V+K+G N+GR+FYACS PRGE CDFFMW EDNP LV +EL T + G EW R+ W+ F K+ IPELK S
Sbjct: 696 LLKEVAPKCTHHLQTARLLRVKKSGANRGRRFYACSFPRGEECDFFMWVEDNPILVAAELGFSSVAASPTAGDIAGLDISELDEWTDRQVEGWKRRFQKMTIPELKDTSK 805
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A7S4AC91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AC91_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 9.330e-17 Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1
Query: 40 APRCPQHQRAGKLLTVRKTGL-NKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKVSN 306
AP+C +HQR KL+ V+KT N+GR+FYACS+PRGE CD F WA+D + L + + R+ A + + F KL +PELK+ ++
Sbjct: 66 APKCARHQRPCKLIKVKKTTSGNRGREFYACSMPRGEQCDHFQWADDTVEAARNILAKNTSYSSFITRQVAAYVDRFRKLTVPELKEETS 155
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A448ZEN4_9STRA (DNA helicase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEN4_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 6.110e-15 Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 37 LAPRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKVSN 306
+AP+C +HQR KL+ VRK T NKGR+FYACS+PRGE CD F WA+D + L + + R+ + F L +PELK+ ++
Sbjct: 610 VAPKCARHQRPCKLIKVRKNTSGNKGREFYACSMPRGEQCDHFQWADDTVEAARATLAKNSSYSSFVTRQVVAHVDRFRTLTVPELKRETS 700
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A482SRV8_9ARCH (RecQ family ATP-dependent DNA helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRV8_9ARCH) HSP 1 Score: 78.2 bits (191), Expect = 1.120e-14 Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 25 LFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALV 192
L +LAP CP H KLLTV+KTG NKGR+FYAC P + C+FF+WAEDNP L+
Sbjct: 125 LLEQLAPLCPGHSMPAKLLTVKKTGGNKGRRFYACCFPADQRCNFFLWAEDNPDLL 180
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A7S2Q2M5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q2M5_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.000e-13 Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 1
Query: 43 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELK 294
P C +HQR KLLTV+K T NKGRKFY CS+PRGE CDFF W ED L + + R+ A F +L +PEL+
Sbjct: 630 PMCTRHQRPCKLLTVKKNTKGNKGRKFYVCSMPRGEQCDFFKWEEDTVEATQRALLKSSSSSGFIARQVAASRIRFKELTVPELR 714
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: K0T7M4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T7M4_THAOC) HSP 1 Score: 73.9 bits (180), Expect = 3.490e-13 Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 1
Query: 43 PRCPQHQRAGKLLTVRKTGL-NKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELK 294
P C +HQR KLLTV+K NKGRKF+ CS+PRGE CDFF W ED L + + R+ A + F +L +PEL+
Sbjct: 551 PLCTRHQRPCKLLTVKKNNKGNKGRKFFVCSMPRGEQCDFFKWEEDTIEATQRALLQSSSSSGFIARQVAAAKTRFKELTVPELR 635
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A1Z5KAS2_FISSO (DNA helicase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAS2_FISSO) HSP 1 Score: 72.8 bits (177), Expect = 8.790e-13 Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 40 APRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKVSN 306
AP C HQ+ KL+TV+K T NKGRKFYACS PRGE CD F WA+D + + L ++ + R+ + L +PEL+ ++
Sbjct: 258 APSCSGHQQPCKLVTVKKNTRGNKGRKFYACSFPRGEQCDHFEWADDTQEAINAALQNNDSTSGFIARQVTGYVNQIRSLTVPELRTLTE 347
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A6S8XWW2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8XWW2_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 5.570e-12 Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 1
Query: 43 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELK 294
P CP+H R KLL V+K T NKGRKFYACS+P+GE CDFF W +D + L + + R+ A + L +PEL+
Sbjct: 502 PVCPRHSRPCKLLIVKKNTTGNKGRKFYACSMPQGERCDFFQWEDDTVDATRTALLHSSSNSGFIARQVAAHVDRLKVLTVPELR 586 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig132900.2346.1 >prot_H-elongata_contig132900.2346.1 ID=prot_H-elongata_contig132900.2346.1|Name=mRNA_H-elongata_contig132900.2346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGback to top mRNA from alignment at H-elongata_contig132900:376..1703- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig132900.2346.1 ID=mRNA_H-elongata_contig132900.2346.1|Name=mRNA_H-elongata_contig132900.2346.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1328bp|location=Sequence derived from alignment at H-elongata_contig132900:376..1703- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig132900:376..1703- >mRNA_H-elongata_contig132900.2346.1 ID=mRNA_H-elongata_contig132900.2346.1|Name=mRNA_H-elongata_contig132900.2346.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig132900:376..1703- (Himanthalia elongata Himel1 dioecious)back to top |