mRNA_H-elongata_contig132851.2345.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132851.2345.1
Unique NamemRNA_H-elongata_contig132851.2345.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132851.2345.1 vs. uniprot
Match: D7FJI7_ECTSI (Pleckstrin homology (PH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI7_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 7.380e-8
Identity = 25/29 (86.21%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   25 FFQRARSDPRCQDHDAQSLLIMPIQRIPR 111
               RARSDPRCQD DAQSLLIMPIQRIPR
Sbjct:  375 LLHRARSDPRCQDLDAQSLLIMPIQRIPR 403
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132851.2345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJI7_ECTSI7.380e-886.21Pleckstrin homology (PH) domain-containing protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132851contigH-elongata_contig132851:245..358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.8138494-CDS-H-elongata_contig132851:244..3581622929788.8138494-CDS-H-elongata_contig132851:244..358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132851 245..358 -
1691679158.0278234-CDS-H-elongata_contig132851:244..3581691679158.0278234-CDS-H-elongata_contig132851:244..358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132851 245..358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132851.2345.1prot_H-elongata_contig132851.2345.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132851 245..358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132851.2345.1

>prot_H-elongata_contig132851.2345.1 ID=prot_H-elongata_contig132851.2345.1|Name=mRNA_H-elongata_contig132851.2345.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
MPPSIPRPFFQRARSDPRCQDHDAQSLLIMPIQRIPR*
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mRNA from alignment at H-elongata_contig132851:245..358-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132851.2345.1 ID=mRNA_H-elongata_contig132851.2345.1|Name=mRNA_H-elongata_contig132851.2345.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig132851:245..358- (Himanthalia elongata Himel1 dioecious)
ATGCCTCCATCCATCCCTCGCCCCTTTTTCCAGCGAGCCCGATCGGACCC
TCGATGCCAAGACCACGACGCACAGAGCCTCCTTATCATGCCCATCCAAA
GGATACCCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig132851:245..358-

>mRNA_H-elongata_contig132851.2345.1 ID=mRNA_H-elongata_contig132851.2345.1|Name=mRNA_H-elongata_contig132851.2345.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig132851:245..358- (Himanthalia elongata Himel1 dioecious)
ATGCCTCCATCCATCCCTCGCCCCTTTTTCCAGCGAGCCCGATCGGACCC
TCGATGCCAAGACCACGACGCACAGAGCCTCCTTATCATGCCCATCCAAA
GGATACCCAGGTGAATGCCTCCATCCATCCCTCGCCCCTTTTTCCAGCGA
GCCCGATCGGACCCTCGATGCCAAGACCACGACGCACAGAGCCTCCTTAT
CATGCCCATCCAAAGGATACCCAGGTGA
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