mRNA_H-elongata_contig132717.2338.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132717.2338.1
Unique NamemRNA_H-elongata_contig132717.2338.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132717.2338.1 vs. uniprot
Match: D7FP88_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP88_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 5.090e-38
Identity = 65/94 (69.15%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:    1 QLEELEDRDVAATSVILKKDGTIEAGATDGPLPLACRGKWSFRDKAFTMEISREFDASIPYTVSRILTGFVEEVLPATDTVILSGDITMENMEV 282
            QLEELEDRDVA TSV+L +DG++ AG T+GP+P+  RGKWSF   AF M++ REFDASIPY VSR++TG+VEEVL ATDTVI++GDI ME MEV
Sbjct:   98 QLEELEDRDVAETSVVLNEDGSVTAGKTNGPIPIQVRGKWSFDGTAFRMDLHREFDASIPYMVSRVMTGYVEEVLSATDTVIITGDIVMEEMEV 191
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BLAST of mRNA_H-elongata_contig132717.2338.1 vs. uniprot
Match: H6WBB0_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB0_VAULI)

HSP 1 Score: 102 bits (255), Expect = 4.350e-26
Identity = 47/93 (50.54%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    4 LEELEDRDVAATSVILKKDGTIEAGATDGPLPLACRGKWSFRDKAFTMEISREFDASIPYTVSRILTGFVEEVLPATDTVILSGDITMENMEV 282
            LEELED+D   TS++L +DG++  GAT GP+P++ RG+WS  +K F MEI+REF++  P+ V+R  +G +EE+L  T T+ILSGDI M+   V
Sbjct:   20 LEELEDKDSCETSIVLNEDGSVSLGATSGPIPMSARGEWSMEEKNFEMEITREFESIEPFEVTRKFSGEIEEILKETKTIILSGDILMDETPV 112
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BLAST of mRNA_H-elongata_contig132717.2338.1 vs. uniprot
Match: A0A835Z9V2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9V2_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.330e-24
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    1 QLEELEDRDVAATSVILKKDGTIEAGATDGPLPLACRGKWSFRDK-AFTMEISREFDASIPYTVSRILTGFVEEVLPATDTVILSGDITME 270
            QLEELED++ AATSV+L  DG++  GATDGPLP +  G WS  D+ AF M + REF++S  Y V+R  TG +EEV+ AT T+IL+G+I M+
Sbjct:   70 QLEELEDKETAATSVVLNGDGSVSFGATDGPLPKSTTGSWSMDDEGAFRMTVVREFESSYSYEVTRTFTGVIEEVMEATKTIILAGEIYMD 160
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BLAST of mRNA_H-elongata_contig132717.2338.1 vs. uniprot
Match: A0A6U0KI98_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0KI98_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.690e-11
Identity = 35/74 (47.30%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:    1 QLEELEDRDVAATSVILKKDGTIEAGATDGPLPLACRGKWSFRDKAFTMEISREFDASIPYTVSRILTGFVEEV 222
            QLEELEDRD  +T V+LK DGT+  GATDGP P    G W F    F ME+ R +    P   S  +  F  EV
Sbjct:   50 QLEELEDRDDCSTEVLLKDDGTVTTGATDGPPPSESSGTWEFAGDTFKMELKRVYQGGEPPLKSTDVGEFKYEV 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132717.2338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FP88_ECTSI5.090e-3869.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
H6WBB0_VAULI4.350e-2650.54Uncharacterized protein n=1 Tax=Vaucheria litorea ... [more]
A0A835Z9V2_9STRA1.330e-2454.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U0KI98_9STRA3.690e-1147.30Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132717contigH-elongata_contig132717:57..1446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_000370.1
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.1495254-CDS-H-elongata_contig132717:56..2031622929788.1495254-CDS-H-elongata_contig132717:56..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132717 57..203 +
1691679157.786564-CDS-H-elongata_contig132717:56..2031691679157.786564-CDS-H-elongata_contig132717:56..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132717 57..203 +
1622929788.2172213-CDS-H-elongata_contig132717:1311..14461622929788.2172213-CDS-H-elongata_contig132717:1311..1446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132717 1312..1446 +
1691679157.798775-CDS-H-elongata_contig132717:1311..14461691679157.798775-CDS-H-elongata_contig132717:1311..1446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132717 1312..1446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132717.2338.1prot_H-elongata_contig132717.2338.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132717 57..1446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132717.2338.1

>prot_H-elongata_contig132717.2338.1 ID=prot_H-elongata_contig132717.2338.1|Name=mRNA_H-elongata_contig132717.2338.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
QLEELEDRDVAATSVILKKDGTIEAGATDGPLPLACRGKWSFRDKAFTME
ISREFDASIPYTVSRILTGFVEEVLPATDTVILSGDITMENMEV
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mRNA from alignment at H-elongata_contig132717:57..1446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132717.2338.1 ID=mRNA_H-elongata_contig132717.2338.1|Name=mRNA_H-elongata_contig132717.2338.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1390bp|location=Sequence derived from alignment at H-elongata_contig132717:57..1446+ (Himanthalia elongata Himel1 dioecious)
CAGCTGGAAGAGCTGGAAGACAGAGACGTTGCGGCAACCTCGGTGATCCT
AAAGAAGGACGGCACCATCGAGGCTGGGGCTACCGACGGCCCGCTGCCGC
TCGCCTGCCGAGGGAAATGGTCATTCCGAGACAAAGCGTTCACCATGGTA
CGCTAATTAGTACAGTATAGTATTTTTAAGTCGCTTTGATAGTCACTAGC
CCACTAGTCCACTATGGTACGGTTTATTAGCATTAGCCTTGTCACTAATA
TCTACTCTTAATACTCTTATCGTAATGAAAATGTCACTTTAATCGTCCAC
CACGGTATCGTTTTCATGCCCTTGCTAATAGTCGTGTTATTGCGAATAGT
CATGTCCTTGCGAATAGTCGTGTCCTTGCTAATAGTCGCTAGCCCCCTCC
TCCTAGTGATAAGTGTGTCGCGCTTCCGGAGACAAACGTTGCCACCGTGA
GAACTCCAACGGTCCTCCACAATAATAATGGATTACACGGCAAAATACTA
TTGCTATTACTAGTCACTGAGTCTCTCTTACGAAACGCTGACAAGTGACT
ATGTTATGTTATTATTCTAATTCTAATAGTAATAGTAATAGCAGCATCTT
TTAGTTGACATGCCGGTACTGTAAGCGGTAAGGAATGCCGGAAAGCGACG
TCATGCACGAGCAGGCTTGACGGCGTCGTATACCCCGAATGAATCTATTG
CCTGGAATAGGACAGGACAGGACGGGACGAGACAGTTTTGTAACCGTCAA
GGTAACATGTCCCACGTGGATGACCGCTTGAATGCGTGACGATCTGGTAT
CGATCGCGTATGAAGGGATAATCATACGCAACGGAAAGGTAGGTCGTGGC
TCTGTAGACCAAGACTCTCCAGGGGAAAGCTATCAAACATCCCCTCCCTT
CTCTTCCTTTCCCTAATTTTTCAATAAATTTCGCTCCTTCTTACGAACAG
TATCGCCATACTGTAGCTGGTATGTCTAGCCGATTGTCCATTTCGGCTTG
GGTAGCAGAGTGAGCAATTAACAATGTAGCGTTCACGCCTTTCAGTTCAA
TGAAACCCCTGTAAGTTGATGGAGTGAAACCCTCGACCTACTTCACTCCC
TCGTCTGCGGATCTGACGATTGGTATCCCCGCCCCCCTTTTTGAGTGAAC
ACCTTTATCAATCGAACACCCTCGATCAATTGAACACCCTCGTTATCTCC
CCACCCACACAGGATCCCCCTCCCCTCCCGCATTCTGATATTGATAACGT
TCCAGGAAATTTCGAGAGAATTCGACGCCTCCATCCCCTACACGGTGTCA
AGAATTCTGACCGGGTTCGTTGAGGAGGTGCTTCCCGCTACAGATACCGT
AATACTTTCCGGAGATATCACCATGGAGAACATGGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig132717:57..1446+

>mRNA_H-elongata_contig132717.2338.1 ID=mRNA_H-elongata_contig132717.2338.1|Name=mRNA_H-elongata_contig132717.2338.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig132717:57..1446+ (Himanthalia elongata Himel1 dioecious)
CAGCTGGAAGAGCTGGAAGACAGAGACGTTGCGGCAACCTCGGTGATCCT
AAAGAAGGACGGCACCATCGAGGCTGGGGCTACCGACGGCCCGCTGCCGC
TCGCCTGCCGAGGGAAATGGTCATTCCGAGACAAAGCGTTCACCATGCAG
CTGGAAGAGCTGGAAGACAGAGACGTTGCGGCAACCTCGGTGATCCTAAA
GAAGGACGGCACCATCGAGGCTGGGGCTACCGACGGCCCGCTGCCGCTCG
CCTGCCGAGGGAAATGGTCATTCCGAGACAAAGCGTTCACCATGGAAATT
TCGAGAGAATTCGACGCCTCCATCCCCTACACGGTGTCAAGAATTCTGAC
CGGGTTCGTTGAGGAGGTGCTTCCCGCTACAGATACCGTAATACTTTCCG
GAGATATCACCATGGAGAACATGGAGGTGGAAATTTCGAGAGAATTCGAC
GCCTCCATCCCCTACACGGTGTCAAGAATTCTGACCGGGTTCGTTGAGGA
GGTGCTTCCCGCTACAGATACCGTAATACTTTCCGGAGATATCACCATGG
AGAACATGGAGGTG
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