mRNA_H-elongata_contig132703.2336.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 4.060e-13 Identity = 33/90 (36.67%), Postives = 49/90 (54.44%), Query Frame = 1
Query: 25 VWHRRLGNLHAPNLDILRKRYGTNITFEGAVSDCGVCAVGKAQQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTK 294
+WHRRL + H ++ + T + + C C + K+ Q + KTA H +P Q Y DL+GP +P GG+ YVSK TDEY++
Sbjct: 470 LWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSR 559
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 3.690e-10 Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 1
Query: 91 TNITFEGAVSDCGVCAVGKAQQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTK 294
T + + ++ C C + K+ Q + KTA H +P Q Y DL+GP +P GGY YVSK TDEY++
Sbjct: 10 TGVKLKDKMAPCETCIIQKSTQKKHPKTAQHTAVQPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSR 77
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: UPI0006A70348 (uncharacterized protein LOC106324114 n=2 Tax=Brassica TaxID=3705 RepID=UPI0006A70348) HSP 1 Score: 57.8 bits (138), Expect = 1.390e-7 Identity = 31/97 (31.96%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 4 NAVVNAQVWHRRLGNLHAPNLDILRKRYGTNITFEGAVSDCGVCAVGKAQQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTK 294
N VV+A +WH RLG+ LD + G + + +S C +C + K + L ++ N + F+L + ++ GPF+ I GYKY I D++T+
Sbjct: 592 NIVVDASLWHHRLGHPSIQKLDSIANVLGLSQRNK-TLSHCAICPLAKQKHLPFISHKNMCIEA-FELLHINIWGPFSVPSIEGYKYFLTILDDHTR 686
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: A0A445KL17_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445KL17_GLYSO) HSP 1 Score: 57.4 bits (137), Expect = 1.990e-7 Identity = 33/102 (32.35%), Postives = 56/102 (54.90%), Query Frame = 1
Query: 4 NAVVNAQVWHRRLGNLHAPNL-DILRKRY---GTNITFEGAVSDCGVCAVGKAQQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTKW 297
+A+V+ QVWH+RLG+ +A L D+L+ Y N + DC C +GK++ L + T NV +PF++ + D+ G + YKY D+Y+++
Sbjct: 1329 SAIVDYQVWHKRLGHPNANVLHDLLKSNYLGNKHNSSLNAVHFDCIPCKLGKSKILPF-PTHQSNVTQPFEIIHSDVWGVAPVISHAHYKYFITFIDDYSRF 1429
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 4.510e-7 Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 1
Query: 115 VSDCGVCAVGKA---QQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTK 294
++ C C + K+ ++ KTA H +P Q Y DL+GP +P GGY YVSK TDEY++
Sbjct: 1 MAPCETCKIQKSTLPKRNTLTKTAQHTAVQPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSR 63
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: A0A6H5L2Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q8_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 5.600e-7 Identity = 27/68 (39.71%), Postives = 36/68 (52.94%), Query Frame = 1
Query: 91 TNITFEGAVSDCGVCAVGKAQQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTK 294
T + C C + Q+ + KTA H +P Q Y DL+GP +P GGY YVSK TDEY++
Sbjct: 11 TGVKLTDKTEPCETCKIQNTQK-KHPKTAQHIAVQPCQRVYTDLLGPTSPPAKGGYIYVSKFTDEYSR 77
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: A0A6H5K626_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K626_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 6.710e-7 Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1
Query: 169 KTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTKW 297
K A + V RPFQ D +GPFTP V+GG+KY +K D+ TKW
Sbjct: 631 KQATYGVLRPFQHVSVDTLGPFTPTVLGGFKYATKFVDQQTKW 673
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: W8AQ86_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8AQ86_CERCA) HSP 1 Score: 50.1 bits (118), Expect = 7.310e-5 Identity = 29/102 (28.43%), Postives = 47/102 (46.08%), Query Frame = 1
Query: 1 MNAVVNAQVWHRRLGNLHAPNLDILRKRY---GTNITFEGAVSDCGVCAVGKAQQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTKW 297
+NAV +A WHRR G+++ +L+ L G + +C CAV K Y+ +N +L + DL GP +GG Y D+Y+++
Sbjct: 410 VNAVSDANDWHRRFGHINVSDLNKLHDLNMVNGLKANLPKTI-ECFTCAVCKIHSKPYMSYSNIYTKNVLELVHTDLCGPMGIGSVGGASYFVTFIDDYSRY 510 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig132703.2336.1 >prot_H-elongata_contig132703.2336.1 ID=prot_H-elongata_contig132703.2336.1|Name=mRNA_H-elongata_contig132703.2336.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp MNAVVNAQVWHRRLGNLHAPNLDILRKRYGTNITFEGAVSDCGVCAVGKAback to top mRNA from alignment at H-elongata_contig132703:144..440- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig132703.2336.1 ID=mRNA_H-elongata_contig132703.2336.1|Name=mRNA_H-elongata_contig132703.2336.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig132703:144..440- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig132703:144..440- >mRNA_H-elongata_contig132703.2336.1 ID=mRNA_H-elongata_contig132703.2336.1|Name=mRNA_H-elongata_contig132703.2336.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig132703:144..440- (Himanthalia elongata Himel1 dioecious)back to top |