mRNA_H-elongata_contig132703.2336.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132703.2336.1
Unique NamemRNA_H-elongata_contig132703.2336.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.060e-13
Identity = 33/90 (36.67%), Postives = 49/90 (54.44%), Query Frame = 1
Query:   25 VWHRRLGNLHAPNLDILRKRYGTNITFEGAVSDCGVCAVGKAQQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTK 294
            +WHRRL + H   ++   +   T +     +  C  C + K+ Q  + KTA H   +P Q  Y DL+GP +P   GG+ YVSK TDEY++
Sbjct:  470 LWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSR 559          
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.690e-10
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 1
Query:   91 TNITFEGAVSDCGVCAVGKAQQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTK 294
            T +  +  ++ C  C + K+ Q  + KTA H   +P Q  Y DL+GP +P   GGY YVSK TDEY++
Sbjct:   10 TGVKLKDKMAPCETCIIQKSTQKKHPKTAQHTAVQPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSR 77          
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: UPI0006A70348 (uncharacterized protein LOC106324114 n=2 Tax=Brassica TaxID=3705 RepID=UPI0006A70348)

HSP 1 Score: 57.8 bits (138), Expect = 1.390e-7
Identity = 31/97 (31.96%), Postives = 52/97 (53.61%), Query Frame = 1
Query:    4 NAVVNAQVWHRRLGNLHAPNLDILRKRYGTNITFEGAVSDCGVCAVGKAQQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTK 294
            N VV+A +WH RLG+     LD +    G +   +  +S C +C + K + L ++   N  +   F+L + ++ GPF+   I GYKY   I D++T+
Sbjct:  592 NIVVDASLWHHRLGHPSIQKLDSIANVLGLSQRNK-TLSHCAICPLAKQKHLPFISHKNMCIEA-FELLHINIWGPFSVPSIEGYKYFLTILDDHTR 686          
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: A0A445KL17_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445KL17_GLYSO)

HSP 1 Score: 57.4 bits (137), Expect = 1.990e-7
Identity = 33/102 (32.35%), Postives = 56/102 (54.90%), Query Frame = 1
Query:    4 NAVVNAQVWHRRLGNLHAPNL-DILRKRY---GTNITFEGAVSDCGVCAVGKAQQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTKW 297
            +A+V+ QVWH+RLG+ +A  L D+L+  Y     N +      DC  C +GK++ L +  T   NV +PF++ + D+ G    +    YKY     D+Y+++
Sbjct: 1329 SAIVDYQVWHKRLGHPNANVLHDLLKSNYLGNKHNSSLNAVHFDCIPCKLGKSKILPF-PTHQSNVTQPFEIIHSDVWGVAPVISHAHYKYFITFIDDYSRF 1429          
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.510e-7
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 1
Query:  115 VSDCGVCAVGKA---QQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTK 294
            ++ C  C + K+   ++    KTA H   +P Q  Y DL+GP +P   GGY YVSK TDEY++
Sbjct:    1 MAPCETCKIQKSTLPKRNTLTKTAQHTAVQPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSR 63          
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: A0A6H5L2Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 5.600e-7
Identity = 27/68 (39.71%), Postives = 36/68 (52.94%), Query Frame = 1
Query:   91 TNITFEGAVSDCGVCAVGKAQQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTK 294
            T +        C  C +   Q+  + KTA H   +P Q  Y DL+GP +P   GGY YVSK TDEY++
Sbjct:   11 TGVKLTDKTEPCETCKIQNTQK-KHPKTAQHIAVQPCQRVYTDLLGPTSPPAKGGYIYVSKFTDEYSR 77          
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: A0A6H5K626_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K626_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 6.710e-7
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1
Query:  169 KTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTKW 297
            K A + V RPFQ    D +GPFTP V+GG+KY +K  D+ TKW
Sbjct:  631 KQATYGVLRPFQHVSVDTLGPFTPTVLGGFKYATKFVDQQTKW 673          
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Match: W8AQ86_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8AQ86_CERCA)

HSP 1 Score: 50.1 bits (118), Expect = 7.310e-5
Identity = 29/102 (28.43%), Postives = 47/102 (46.08%), Query Frame = 1
Query:    1 MNAVVNAQVWHRRLGNLHAPNLDILRKRY---GTNITFEGAVSDCGVCAVGKAQQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTKW 297
            +NAV +A  WHRR G+++  +L+ L       G        + +C  CAV K     Y+  +N       +L + DL GP     +GG  Y     D+Y+++
Sbjct:  410 VNAVSDANDWHRRFGHINVSDLNKLHDLNMVNGLKANLPKTI-ECFTCAVCKIHSKPYMSYSNIYTKNVLELVHTDLCGPMGIGSVGGASYFVTFIDDYSRY 510          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132703.2336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE4.060e-1336.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE3.690e-1041.18Integrase catalytic domain-containing protein (Fra... [more]
UPI0006A703481.390e-731.96uncharacterized protein LOC106324114 n=2 Tax=Brass... [more]
A0A445KL17_GLYSO1.990e-732.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KFB1_9PHAE4.510e-741.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L2Q8_9PHAE5.600e-739.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K626_9PHAE6.710e-753.49Integrase catalytic domain-containing protein n=1 ... [more]
W8AQ86_CERCA7.310e-528.43Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132703contigH-elongata_contig132703:144..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog225117.XP_009362851.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs389M0@33090,3GYSF@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.0346837-CDS-H-elongata_contig132703:143..4401622929788.0346837-CDS-H-elongata_contig132703:143..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132703 144..440 -
1691679157.7527406-CDS-H-elongata_contig132703:143..4401691679157.7527406-CDS-H-elongata_contig132703:143..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132703 144..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132703.2336.1prot_H-elongata_contig132703.2336.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132703 144..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132703.2336.1

>prot_H-elongata_contig132703.2336.1 ID=prot_H-elongata_contig132703.2336.1|Name=mRNA_H-elongata_contig132703.2336.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MNAVVNAQVWHRRLGNLHAPNLDILRKRYGTNITFEGAVSDCGVCAVGKA
QQLAYLKTANHNVNRPFQLCYEDLMGPFTPVVIGGYKYVSKITDEYTKW
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mRNA from alignment at H-elongata_contig132703:144..440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132703.2336.1 ID=mRNA_H-elongata_contig132703.2336.1|Name=mRNA_H-elongata_contig132703.2336.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig132703:144..440- (Himanthalia elongata Himel1 dioecious)
ATGAACGCAGTCGTCAATGCCCAGGTTTGGCACCGACGGCTGGGTAATCT CCATGCGCCGAACCTAGATATTCTACGCAAGCGATACGGCACTAACATCA CCTTCGAGGGGGCCGTCTCGGACTGCGGCGTTTGCGCCGTGGGAAAAGCT CAACAGCTTGCTTATCTCAAGACGGCCAATCACAACGTCAACCGGCCTTT CCAGCTGTGTTACGAAGACCTGATGGGGCCCTTCACGCCTGTGGTCATAG GCGGCTACAAGTACGTCAGCAAAATAACCGACGAGTACACAAAGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig132703:144..440-

>mRNA_H-elongata_contig132703.2336.1 ID=mRNA_H-elongata_contig132703.2336.1|Name=mRNA_H-elongata_contig132703.2336.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig132703:144..440- (Himanthalia elongata Himel1 dioecious)
ATGAACGCAGTCGTCAATGCCCAGGTTTGGCACCGACGGCTGGGTAATCT
CCATGCGCCGAACCTAGATATTCTACGCAAGCGATACGGCACTAACATCA
CCTTCGAGGGGGCCGTCTCGGACTGCGGCGTTTGCGCCGTGGGAAAAGCT
CAACAGCTTGCTTATCTCAAGACGGCCAATCACAACGTCAACCGGCCTTT
CCAGCTGTGTTACGAAGACCTGATGGGGCCCTTCACGCCTGTGGTCATAG
GCGGCTACAAGTACGTCAGCAAAATAACCGACGAGTACACAAAGTGGATG
AACGCAGTCGTCAATGCCCAGGTTTGGCACCGACGGCTGGGTAATCTCCA
TGCGCCGAACCTAGATATTCTACGCAAGCGATACGGCACTAACATCACCT
TCGAGGGGGCCGTCTCGGACTGCGGCGTTTGCGCCGTGGGAAAAGCTCAA
CAGCTTGCTTATCTCAAGACGGCCAATCACAACGTCAACCGGCCTTTCCA
GCTGTGTTACGAAGACCTGATGGGGCCCTTCACGCCTGTGGTCATAGGCG
GCTACAAGTACGTCAGCAAAATAACCGACGAGTACACAAAGTGG
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