mRNA_H-elongata_contig132587.2329.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132587.2329.1
Unique NamemRNA_H-elongata_contig132587.2329.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132587.2329.1 vs. uniprot
Match: D7G5K6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K6_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 5.640e-30
Identity = 91/219 (41.55%), Postives = 119/219 (54.34%), Query Frame = 1 
Query:   40 TARVDLVRTRRHCHGFLECEPGLWLVFVL-SNHRAAGLPRVVGGVRYAGVSQERSRNRLRTMVFGRGVSSSPAA------GGGKISFENRDG---SP-PRERSAPAAAPVDFGRVSTKLKGGSSREVSSGATEDWVDETALRAAMAKAYDTFALLHGPVQSVLDSPVRVLQGVNSERADNGGGGSSGGVFTGAEILRRLTTARKRLRFARRASVQVRAH 663
            + +V++VRTR+HCHGFLECEPG+WLV V+ S  R    P   G  +    S+  +R+ LR+ VFGRG+  SP +      G G  +    D    SP P  R    ++P     V     GG      SG   DWVDETAL AAM  AY T AL+HGPV S LD+P  +    + E    GGGG       G E+LRRL +ARKRLR A++ ++ +  H
Sbjct:  101 SGKVEVVRTRQHCHGFLECEPGVWLVMVMVSRRRQEQQPEDAGNPK---ASRPSTRSLLRSAVFGRGIGISPPSATTDPRGHGSRADHRVDAAVRSPSPAARDRSPSSPAAARSVRNDRAGG--XXXXSG---DWVDETALHAAMGTAYQTLALMHGPVSSALDAPAALPPPPSGEGV--GGGGDI--TVPGLEVLRRLASARKRLRKAKKKALDLAEH 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132587.2329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5K6_ECTSI5.640e-3041.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132587contigH-elongata_contig132587:385..1507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_000990.1
Exons2
Model size663
Cds size663
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929787.3251019-CDS-H-elongata_contig132587:384..8991622929787.3251019-CDS-H-elongata_contig132587:384..899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132587 385..899 -
1691679157.478324-CDS-H-elongata_contig132587:384..8991691679157.478324-CDS-H-elongata_contig132587:384..899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132587 385..899 -
1622929787.3391213-CDS-H-elongata_contig132587:1359..15071622929787.3391213-CDS-H-elongata_contig132587:1359..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132587 1360..1507 -
1691679157.4856784-CDS-H-elongata_contig132587:1359..15071691679157.4856784-CDS-H-elongata_contig132587:1359..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132587 1360..1507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132587.2329.1prot_H-elongata_contig132587.2329.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132587 385..1507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132587.2329.1

>prot_H-elongata_contig132587.2329.1 ID=prot_H-elongata_contig132587.2329.1|Name=mRNA_H-elongata_contig132587.2329.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=221bp
GEEVKGRVARGSWTARVDLVRTRRHCHGFLECEPGLWLVFVLSNHRAAGL
PRVVGGVRYAGVSQERSRNRLRTMVFGRGVSSSPAAGGGKISFENRDGSP
PRERSAPAAAPVDFGRVSTKLKGGSSREVSSGATEDWVDETALRAAMAKA
YDTFALLHGPVQSVLDSPVRVLQGVNSERADNGGGGSSGGVFTGAEILRR
LTTARKRLRFARRASVQVRAH
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mRNA from alignment at H-elongata_contig132587:385..1507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132587.2329.1 ID=mRNA_H-elongata_contig132587.2329.1|Name=mRNA_H-elongata_contig132587.2329.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1123bp|location=Sequence derived from alignment at H-elongata_contig132587:385..1507- (Himanthalia elongata Himel1 dioecious)
GGGGAGGAAGTGAAAGGGCGCGTCGCTCGTGGGTCATGGACGGCCAGGGT
AGACCTAGTGAGGACAAGGCGTCACTGCCACGGGTTCTTGGAGTGCGAGC
CGGGGCTGTGGCTCGTGTTTGTGCTGAGTAACCACCGAGCGGCGGGGCGT
GAGTAGCTCTACCCGCGCACAGAGAAAAAAAAACTCGAAATGGTAGCGAG
ACTCTTCGCCCGATTCGTGATCGGCTCTTGTATCTACCGTGCACGCGCGA
TGCAGCCGCGTGGGGGAAACGAAAATGCCTCTTTTTACACAATACCCATC
GGAAACACCATGCTTCCTTGGACGGCGAAGAGCCACTGTTGTTTTTCTTA
ACGCTGCCGTGTCAGCGCTCGGAATATCAGCAAGTTTGACCCAAGAGTCG
AACGGAAAGAAATTAATTCCCTGTCTCTTCTCCACGCTCTCTCGCTCGCT
CGCGTAAAACCCTTCGAAGCTTTTGTTTAGTTTCGGTTTTGTGTTTAGAC
TTTTAAAAATCTTGCCTCCGCCTCTTTTTGAATTCCGGACAGAATCGCGA
CAGCAAAAATGGCTGACGTCGGCGAAAAGTACTGCTAATGAAGTCGGCGC
AATGGGAGTTCCACGCGTGGTCGGAGGCGTAAGGTACGCTGGCGTATCCC
AAGAACGCTCCCGCAACCGACTGCGAACCATGGTCTTTGGGCGCGGAGTC
AGCTCAAGCCCTGCGGCGGGAGGAGGCAAAATAAGCTTTGAGAATCGCGA
CGGTTCCCCCCCGAGAGAGAGATCAGCGCCGGCTGCCGCGCCCGTAGACT
TTGGTAGGGTTTCTACAAAATTGAAAGGTGGCAGTAGCAGAGAGGTAAGT
AGCGGAGCGACGGAAGATTGGGTCGACGAGACGGCGCTGCGCGCAGCGAT
GGCGAAGGCGTACGACACCTTTGCGCTGCTGCACGGGCCCGTGCAATCCG
TTCTCGACTCCCCCGTACGGGTCTTGCAAGGTGTTAACAGCGAGAGGGCG
GACAACGGTGGTGGTGGCAGTAGTGGTGGCGTTTTTACCGGAGCCGAGAT
TCTTCGGCGGCTTACGACCGCGCGGAAGCGACTGAGGTTTGCCAGGAGAG
CGTCGGTTCAGGTAAGAGCACAT
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Coding sequence (CDS) from alignment at H-elongata_contig132587:385..1507-

>mRNA_H-elongata_contig132587.2329.1 ID=mRNA_H-elongata_contig132587.2329.1|Name=mRNA_H-elongata_contig132587.2329.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1326bp|location=Sequence derived from alignment at H-elongata_contig132587:385..1507- (Himanthalia elongata Himel1 dioecious)
GGGGAGGAAGTGAAAGGGCGCGTCGCTCGTGGGTCATGGACGGCCAGGGT
AGACCTAGTGAGGACAAGGCGTCACTGCCACGGGTTCTTGGAGTGCGAGC
CGGGGCTGTGGCTCGTGTTTGTGCTGAGTAACCACCGAGCGGCGGGGCGG
GGAGGAAGTGAAAGGGCGCGTCGCTCGTGGGTCATGGACGGCCAGGGTAG
ACCTAGTGAGGACAAGGCGTCACTGCCACGGGTTCTTGGAGTGCGAGCCG
GGGCTGTGGCTCGTGTTTGTGCTGAGTAACCACCGAGCGGCGGGGCTTCC
ACGCGTGGTCGGAGGCGTAAGGTACGCTGGCGTATCCCAAGAACGCTCCC
GCAACCGACTGCGAACCATGGTCTTTGGGCGCGGAGTCAGCTCAAGCCCT
GCGGCGGGAGGAGGCAAAATAAGCTTTGAGAATCGCGACGGTTCCCCCCC
GAGAGAGAGATCAGCGCCGGCTGCCGCGCCCGTAGACTTTGGTAGGGTTT
CTACAAAATTGAAAGGTGGCAGTAGCAGAGAGGTAAGTAGCGGAGCGACG
GAAGATTGGGTCGACGAGACGGCGCTGCGCGCAGCGATGGCGAAGGCGTA
CGACACCTTTGCGCTGCTGCACGGGCCCGTGCAATCCGTTCTCGACTCCC
CCGTACGGGTCTTGCAAGGTGTTAACAGCGAGAGGGCGGACAACGGTGGT
GGTGGCAGTAGTGGTGGCGTTTTTACCGGAGCCGAGATTCTTCGGCGGCT
TACGACCGCGCGGAAGCGACTGAGGTTTGCCAGGAGAGCGTCGGTTCAGG
TAAGAGCACATTTCCACGCGTGGTCGGAGGCGTAAGGTACGCTGGCGTAT
CCCAAGAACGCTCCCGCAACCGACTGCGAACCATGGTCTTTGGGCGCGGA
GTCAGCTCAAGCCCTGCGGCGGGAGGAGGCAAAATAAGCTTTGAGAATCG
CGACGGTTCCCCCCCGAGAGAGAGATCAGCGCCGGCTGCCGCGCCCGTAG
ACTTTGGTAGGGTTTCTACAAAATTGAAAGGTGGCAGTAGCAGAGAGGTA
AGTAGCGGAGCGACGGAAGATTGGGTCGACGAGACGGCGCTGCGCGCAGC
GATGGCGAAGGCGTACGACACCTTTGCGCTGCTGCACGGGCCCGTGCAAT
CCGTTCTCGACTCCCCCGTACGGGTCTTGCAAGGTGTTAACAGCGAGAGG
GCGGACAACGGTGGTGGTGGCAGTAGTGGTGGCGTTTTTACCGGAGCCGA
GATTCTTCGGCGGCTTACGACCGCGCGGAAGCGACTGAGGTTTGCCAGGA
GAGCGTCGGTTCAGGTAAGAGCACAT
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