mRNA_H-elongata_contig132582.2328.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132582.2328.1
Unique NamemRNA_H-elongata_contig132582.2328.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig132582.2328.1 vs. uniprot
Match: D8LIB7_ECTSI (Rhomboid-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB7_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.980e-40
Identity = 70/96 (72.92%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 INIILGLMPYLDNFAHIGGMIMGFFMGLLVLVQKREDDRGMHVETKSYQKMLRLVSAVMVPLLFITGLSMLYGRSDPSEWCGWCESISCVEFPVDD 288
            +NIILGLMP+LDNFAH GGM+MG FMGL +LVQKREDDRG  +  K YQ  L+LV+AV VP L I GLS+LYGRSDP+EWCGWCE+ISCVEFP  D
Sbjct:  579 VNIILGLMPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRLNKKCYQISLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGD 674
[Close]
BLAST of mRNA_H-elongata_contig132582.2328.1 vs. uniprot
Match: A0A6H5JTL7_9PHAE (Rhomboid-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL7_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 4.510e-40
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 INIILGLMPYLDNFAHIGGMIMGFFMGLLVLVQKREDDRGMHVETKSYQKM--LRLVSAVMVPLLFITGLSMLYGRSDPSEWCGWCESISCVEFPVDD 288
            +NIILGLMPYLDNFAH GGM+MG FMGL +LVQKREDDRG  ++ K YQ    L+LV+AV VP L I GLS+LYGRSDP+EWCGWCE+ISCVEFP  D
Sbjct:  577 VNIILGLMPYLDNFAHCGGMLMGLFMGLGLLVQKREDDRGYRLDKKCYQARVSLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGD 674
[Close]
BLAST of mRNA_H-elongata_contig132582.2328.1 vs. uniprot
Match: A0A7S2RTG0_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RTG0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.460e-24
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    1 INIILGLMPYLDNFAHIGGMIMGFFMGLLVLVQKREDDRGMHVETKSYQKMLRLVSAVMVPLLFITGLSMLYGRSDPSEWCGWCESISCVEFP 279
            +N+I+GL+PY+DNFAHIGG++ G   G  VLV  R    G   E K YQ +L+++SAV++P+L +  L +LY   +P EWC WC  +SCV+FP
Sbjct:   92 LNLIVGLIPYVDNFAHIGGLLTGMIAGFGVLVANRYSRYGELKERKRYQLVLQIMSAVLIPVLIVVCLFVLY-LGEPGEWCSWCHYMSCVQFP 183
[Close]
BLAST of mRNA_H-elongata_contig132582.2328.1 vs. uniprot
Match: A0A835YQV6_9STRA (Rhomboid-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.050e-22
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:    1 INIILGLMPYLDNFAHIGGMIMGFFMGLLVLVQKREDDRGMHVETKSYQKMLRLVSAVMVPLLFITGLSMLYGRSDPS--EWCGWCESISCVEFPVDD 288
            +N++LGLMPYLDNFAH+GG++MGFF  L +LV + E   G  V     Q++L+ +  V    L +  L +L+G  + S  EWC WC ++SCVEFP  D
Sbjct:  149 VNLLLGLMPYLDNFAHMGGLVMGFFCSLPLLVMRAETAHGKLVAVSVRQRILQALGLVTSIALLVAALVVLFGSEEDSVNEWCSWCSNLSCVEFPKGD 246
[Close]
BLAST of mRNA_H-elongata_contig132582.2328.1 vs. uniprot
Match: A0A2R5GUE1_9STRA (Rhomboid-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUE1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.060e-21
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    1 INIILGLMPYLDNFAHIGGMIMGFFMGLLVLVQKREDDRGMHVETKSYQKMLRLVSAVMVPLLFITGLSMLYGRSDPSEWCGWCESISCVEFPVDD 288
            +N++LGLMP+LDNFAHI G + G  +G  VLV  R    G   E K YQ +L+ +S ++ PLL +  L +LY   D  EWC WC  +SCV FP  D
Sbjct:  231 VNLMLGLMPFLDNFAHIAGFVTGILVGFGVLVSNRFTRWGELKERKRYQVVLQSLSVLITPLLVVVSLLVLYLGVDADEWCTWCRYLSCVPFPPGD 326
[Close]
BLAST of mRNA_H-elongata_contig132582.2328.1 vs. uniprot
Match: A0A2R5H0C6_9STRA (Rhomboid-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H0C6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.170e-18
Identity = 40/93 (43.01%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    4 NIILGLMPYLDNFAHIGGMIMGFFMGLLVLVQKREDDRGMHVETKSYQKMLRLVSAVMVPLLFITGLSMLYGRSDPSEWCGWCESISCVEFPV 282
            N+ LGL+PYLDNFAH GG   G F+G  +LVQKR +  G   + K+YQ +++ ++ V++P+LF+    +LY   + ++ C WC  ISCV  P+
Sbjct:  294 NLGLGLLPYLDNFAHFGGFCCGLFLGFTLLVQKRYNIWGDLQQRKTYQVVVQSLALVILPILFVVLTLVLYLDVNVADSCDWCSYISCVPLPI 386
[Close]
BLAST of mRNA_H-elongata_contig132582.2328.1 vs. uniprot
Match: A0A251UCK3_HELAN (RHOMBOID-like protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UCK3_HELAN)

HSP 1 Score: 83.6 bits (205), Expect = 6.280e-17
Identity = 37/101 (36.63%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:    4 NIILGLMPYLDNFAHIGGMIMGFFMGLLVLVQKRED--------DRGMHVETKSYQKMLRLVSAVMVPLLFITGLSMLYGRSDPSEWCGWCESISCVEFPV 282
            N+++G++P++DNFAHIGG I GFF+G ++L + + D           M  + K YQ +L ++S + + ++F TG   LY + D + +C WC  +SCV  P+
Sbjct:  217 NLLVGILPHVDNFAHIGGFITGFFLGFILLARPQLDWIVPPGYYGHPMKPQYKLYQYVLIVLSVIALIVIFTTGFVFLYRKIDGNNYCSWCHYLSCVPTPL 317
[Close]
BLAST of mRNA_H-elongata_contig132582.2328.1 vs. uniprot
Match: UPI001652FC76 (RHOMBOID-like protein 1 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652FC76)

HSP 1 Score: 83.6 bits (205), Expect = 1.070e-16
Identity = 37/101 (36.63%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:    4 NIILGLMPYLDNFAHIGGMIMGFFMGLLVLVQKRED--------DRGMHVETKSYQKMLRLVSAVMVPLLFITGLSMLYGRSDPSEWCGWCESISCVEFPV 282
            N+++G++P++DNFAHIGG I GFF+G ++L + + D           M  + K YQ +L ++S + + ++F TG   LY + D + +C WC  +SCV  P+
Sbjct:  370 NLLVGILPHVDNFAHIGGFITGFFLGFILLARPQLDWIVPPGYYGHPMKPQYKLYQYVLIVLSVIALIVIFTTGFVFLYRKIDGNNYCSWCHYLSCVPTPL 470
[Close]
BLAST of mRNA_H-elongata_contig132582.2328.1 vs. uniprot
Match: A0A7S3UQB1_HETAK (Rhomboid-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQB1_HETAK)

HSP 1 Score: 80.1 bits (196), Expect = 1.670e-15
Identity = 39/92 (42.39%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:    4 NIILGLMPYLDNFAHIGGMIMGFFMGLLVLVQKREDDRGMHVETKSYQKMLRLVSAVMVPLLFITGLSMLYGRSDPSEWCGWCESISCVEFP 279
            N + G MPYLDNFAH GGM+ G   GL++L Q R D  G     K YQ  L  ++A+    L +   + LY  +D    C  C  +SCVEFP
Sbjct:  332 NYVFGFMPYLDNFAHTGGMVFGVLCGLVLLAQTRVDHFGFARGRKCYQTALATLAAMGTAALLMAATAWLYSSADVYAICPRCSKLSCVEFP 423
[Close]
BLAST of mRNA_H-elongata_contig132582.2328.1 vs. uniprot
Match: UPI001CB8C676 (RHOMBOID-like protein 2 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8C676)

HSP 1 Score: 78.6 bits (192), Expect = 3.580e-15
Identity = 35/102 (34.31%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    1 INIILGLMPYLDNFAHIGGMIMGFFMGLLVLVQKRED--------DRGMHVETKSYQKMLRLVSAVMVPLLFITGLSMLYGRSDPSEWCGWCESISCVEFPV 282
            IN+++G++P++DNFAHIGG + GF +G ++L + + D           M  + K YQ +L  +S + +  +F TG  +L+ + D +++C WC  +SCV  P+
Sbjct:  225 INLMVGILPHVDNFAHIGGFVTGFLLGFILLARPQFDWIVPPGYYGHPMKPQYKLYQCILLGLSVIALFAIFTTGFILLFRKVDGNDYCSWCHYLSCVPTPL 326
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132582.2328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIB7_ECTSI1.980e-4072.92Rhomboid-like protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JTL7_9PHAE4.510e-4072.45Rhomboid-like protein n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A7S2RTG0_9STRA4.460e-2448.39Rhomboid-like protein (Fragment) n=1 Tax=labyrinth... [more]
A0A835YQV6_9STRA1.050e-2245.92Rhomboid-like protein n=1 Tax=Tribonema minus TaxI... [more]
A0A2R5GUE1_9STRA4.060e-2146.88Rhomboid-like protein n=1 Tax=Hondaea fermentalgia... [more]
A0A2R5H0C6_9STRA4.170e-1843.01Rhomboid-like protein n=1 Tax=Hondaea fermentalgia... [more]
A0A251UCK3_HELAN6.280e-1736.63RHOMBOID-like protein n=1 Tax=Helianthus annuus Ta... [more]
UPI001652FC761.070e-1636.63RHOMBOID-like protein 1 n=1 Tax=Helianthus annuus ... [more]
A0A7S3UQB1_HETAK1.670e-1542.39Rhomboid-like protein n=1 Tax=Heterosigma akashiwo... [more]
UPI001CB8C6763.580e-1534.31RHOMBOID-like protein 2 n=1 Tax=Erigeron canadensi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132582contigH-elongata_contig132582:226..1501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue3.6e-31
Seed eggNOG ortholog2880.D8LIB7
KEGG koko:K16571
GOsGO:0000139,GO:0002791,GO:0002792,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0005911,GO:0006508,GO:0006807,GO:0006928,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008283,GO:0009506,GO:0009894,GO:0009966,GO:0009987,GO:0010646,GO:0012505,GO:0016020,GO:0016477,GO:0016787,GO:0017171,GO:0019222,GO:0019538,GO:0023051,GO:0030054,GO:0030162,GO:0031090,GO:0031323,GO:0031329,GO:0031984,GO:0032268,GO:0032879,GO:0032880,GO:0040011,GO:0042058,GO:0042175,GO:0042176,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048870,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051171,GO:0051179,GO:0051223,GO:0051224,GO:0051246,GO:0051674,GO:0055044,GO:0060255,GO:0061136,GO:0065007,GO:0070011,GO:0070201,GO:0071704,GO:0071944,GO:0080090,GO:0090087,GO:0098588,GO:0098791,GO:0098827,GO:0140096,GO:1901184,GO:1901564,GO:1903050,GO:1903362,GO:1903530,GO:1903531,GO:1904950
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0705@1,KOG2289@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categorysignal anchor
Exons2
Model size288
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132582.2328.1prot_H-elongata_contig132582.2328.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132582 226..1480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929787.203707-CDS-H-elongata_contig132582:225..3661622929787.203707-CDS-H-elongata_contig132582:225..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132582 226..366 -
1691679157.4515624-CDS-H-elongata_contig132582:225..3661691679157.4515624-CDS-H-elongata_contig132582:225..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132582 226..366 -
1622929787.2440314-CDS-H-elongata_contig132582:1354..14801622929787.2440314-CDS-H-elongata_contig132582:1354..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132582 1355..1480 -
1691679157.4615245-CDS-H-elongata_contig132582:1354..14801691679157.4615245-CDS-H-elongata_contig132582:1354..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132582 1355..1480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929787.260942-UTR-H-elongata_contig132582:1480..15011622929787.260942-UTR-H-elongata_contig132582:1480..1501Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132582 1481..1501 -
1691679157.4704685-UTR-H-elongata_contig132582:1480..15011691679157.4704685-UTR-H-elongata_contig132582:1480..1501Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132582 1481..1501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132582.2328.1

>prot_H-elongata_contig132582.2328.1 ID=prot_H-elongata_contig132582.2328.1|Name=mRNA_H-elongata_contig132582.2328.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MPYLDNFAHIGGMIMGFFMGLLVLVQKREDDRGMHVETKSYQKMLRLVSA
VMVPLLFITGLSMLYGRSDPSEWCGWCESISCVEFPVDD
back to top

mRNA from alignment at H-elongata_contig132582:226..1501-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132582.2328.1 ID=mRNA_H-elongata_contig132582.2328.1|Name=mRNA_H-elongata_contig132582.2328.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1276bp|location=Sequence derived from alignment at H-elongata_contig132582:226..1501- (Himanthalia elongata Himel1 dioecious)
ATAAACATCATCTTGGGCCTCATGCCCTATCTGGACAACTTCGCTCACAT
CGGAGGCATGATCATGGGATTTTTTATGGGTCTCTTGGTGCTAGTGCAGA
AGAGAGAAGATGATCGGGGGATGCATGTCGAAACCAAGTCCTATCAGGTG
TGTTGATGGCGAACGGCGCGCGATGCGAGAACAATCGACTCTTGGCGTGC
AGACCGACCGCGCTTGAGGTTGTAGGGGTGGCTGCGGGTGCTGCTTCGTG
TGGCTCGTGTCTGTCTGTCGGTCGACCGACCGCCTACCGACAGACTGGTT
GGTGTGCTTATGGGATTTTGTCCTTCGAAAAATGTACCGTGTTGACTGGG
TGTGTTTGTCCAGCGCTTCAAGAACCCACGGTTTCCATCAAATACATATA
GGTTACACCTTACATTATAAAAATACATAAAAGACCATATAACGGTATAC
CCGTGTTAATTAAAGCATGTGGTAGATTTTGGACCGCTTCAAAAGGAAAA
ATAAAAGTAAAAAGTATTATCTCTGCTCAAGGCCTAGTTTGTTGGTTGTT
GTTTTTGTCTTTTGCCCGAGACATACCATTTCTCGCCCTGTGCTGCGCCG
CTAGTCTGTTATGCGCGAAGCTACGGAGTTGCATTGCGCTTAGACTCGTT
GTATTATTCTGCTTTGAACCACTGTTGCGATTTCTTTTTGCGCTACTGTT
CCAGAGGAATCCGTGTGTTCCTGTCCGTTTCAAATGCTTTGTGTGTGTGT
GTGTGTGTGTGTGTTTATGTGTGTTTTTATTAAATTGCACATAACTGCGC
CATTCGGCCCTGTCATGCTATTGATAGTCAGTCTAGGCTACTCTCTCTTT
AATAGCATTGATCCTCCCAATGGGGGATAAATCAAGTGTATACATCTTCT
CGCGAGTTTTGCCTTCCATGAAGACGGTAAAATAGCTCTCGAATCGGCTC
AAGAGTTACACACCAGAATATATCGCGTCCTCAGGTCTTTGCCTCCCGAC
CACCGCTAAACGAACCCGAACGCCTGATCTTCGTAGAATGGAAACCCCCT
TCTGAACTCCTCACAATCTCTTCTGCGGCGGGGGGCGGGGCGCTGGCTTT
GTCTACCATGTGTGTCTCTCGCGTAAACGAAACAGAAAATGCTCCGTCTG
GTATCGGCGGTCATGGTGCCCTTGCTGTTCATCACGGGTCTGTCGATGCT
GTACGGAAGATCCGATCCCTCGGAGTGGTGCGGTTGGTGCGAGAGCATCT
CGTGCGTCGAGTTTCCCGTTGACGAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig132582:226..1501-

>mRNA_H-elongata_contig132582.2328.1 ID=mRNA_H-elongata_contig132582.2328.1|Name=mRNA_H-elongata_contig132582.2328.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig132582:226..1501- (Himanthalia elongata Himel1 dioecious)
ATGCCCTATCTGGACAACTTCGCTCACATCGGAGGCATGATCATGGGATT
TTTTATGGGTCTCTTGGTGCTAGTGCAGAAGAGAGAAGATGATCGGGGGA
TGCATGTCGAAACCAAGTCCTATCAGATGCCCTATCTGGACAACTTCGCT
CACATCGGAGGCATGATCATGGGATTTTTTATGGGTCTCTTGGTGCTAGT
GCAGAAGAGAGAAGATGATCGGGGGATGCATGTCGAAACCAAGTCCTATC
AGAAAATGCTCCGTCTGGTATCGGCGGTCATGGTGCCCTTGCTGTTCATC
ACGGGTCTGTCGATGCTGTACGGAAGATCCGATCCCTCGGAGTGGTGCGG
TTGGTGCGAGAGCATCTCGTGCGTCGAGTTTCCCGTTGACGACAAAATGC
TCCGTCTGGTATCGGCGGTCATGGTGCCCTTGCTGTTCATCACGGGTCTG
TCGATGCTGTACGGAAGATCCGATCCCTCGGAGTGGTGCGGTTGGTGCGA
GAGCATCTCGTGCGTCGAGTTTCCCGTTGACGAC
back to top