mRNA_H-elongata_contig13228.2315.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13228.2315.1
Unique NamemRNA_H-elongata_contig13228.2315.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.590e-18
Identity = 57/136 (41.91%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
            C+VIGLQE +REG   +    Y +  SG  +G K+++G HGVG AIKE +   V ++G  +E IS RL+K  + I ++  VTFVV YAPTE   TT G     K  F   L A   +    D + +L DAN +TG+
Sbjct:   12 CDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 147          
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.590e-18
Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
            C+VIGLQE +REG   +    Y +  SG  +G K+++G HGVG+AIKE +   V ++G  +E IS RL+K  + I ++  VTFVV YAPTE   TT G     K  F   L A   +    D + +L DAN +TG+
Sbjct:   12 CDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 147          
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.530e-18
Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
            C+VIGLQE +REG   +    Y +  SG  +G K+++G HGVG+AIKE +   V ++G  +E IS RL+K  + I ++  VTFVV YAPTE   TT G     K  F   L A   +    D + +L DAN +TG+
Sbjct:   12 CDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 147          
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 9.050e-18
Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
            C+VIGLQE +REG   +    Y +  SG  +G K+++G HGVG+AIKE +   V ++G  +E IS RL+K  + I ++  VTFVV YAPTE   TT G     K  F   L A   +    D + +L DAN +TG+
Sbjct:  691 CDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 826          
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5KBF3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF3_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.230e-17
Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
            C+VI LQE +REG   +    Y +  SG  +G K++KG H VG+AIKE +   V ++G  +E IS RL+K  + I ++  VTFVV YAPTE   TT G     K  F   L A   +    D + +L DAN +TG+
Sbjct:   12 CDVIRLQETRREGQGSIAHDGYVIIWSGARAGTKDKKGVHRVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFSTALDAAIREVHSRDHLVVLMDANARTGR 147          
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5JM04_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM04_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.420e-17
Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEGQKAKFLHPL-TAPDHQC----PLGDVFILTDANDKTGK 387
            C+VIGLQE +REG   +    Y +  SG  +G K+++G HGVG+AIKE +   V ++G  +E IS RL+K  + I ++  VTFVV YAPTE   TT G          TAPD           + +L DAN +TG+
Sbjct:   12 CDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTAPDAAIREVHSRDHLVVLMDANARTGR 147          
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.830e-17
Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
            C+VI LQE +REG   +    Y +  SG  +G K+++G HGVG+AIKE +   V ++G  +E IS RL+KA + I ++  VTFVV YAPTE   TT G     K  F   L A   +    D + +L DAN +TG+
Sbjct:   12 CDVIELQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDANARTGR 147          
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.290e-17
Identity = 56/136 (41.18%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
            C+VIGLQE +REG   +    Y +  SG  +G K+++G HGVG+AIKE I   V ++G  +E IS RL+K  + I ++  VTFVV YAPTE   +T G     K  F   L A   +    D + +L  AN +TG+
Sbjct:   43 CDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGR 178          
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.440e-17
Identity = 55/136 (40.44%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
            C+V+GLQE +R+G   +    Y +  SG  +G K+++G HGVG+AIKE +   V ++G  +E IS RL+K  + I ++  VTFVV YAPTE   TT G     K  F   L A   +    D + +L DAN +TG+
Sbjct:   59 CDVVGLQENRRDGQGSIPHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLLVLMDANARTGR 194          
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.010e-17
Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    4 CNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEEIVNKVSKDGIAIEGISARLLKAGVSI-KSNFVTFVVAYAPTE--ETTEG----QKAKFLHPLTAPDHQCPLGD-VFILTDANDKTGK 387
            C+VIGLQE +REG   L    Y +  SG  +G K+++G HGVG+AIKE +   V + G  +E I+ RL+K  + I ++  VTFVV YAPTE   TT G     K  F   L     +    D + +L DAN +TG+
Sbjct:   12 CDVIGLQETRREGQGSLAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGR 147          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13228.2315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMM5_9PHAE1.590e-1841.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KBZ6_9PHAE2.590e-1841.91Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L7A7_9PHAE6.530e-1841.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H7_9PHAE9.050e-1841.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBF3_9PHAE1.230e-1741.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM04_9PHAE1.420e-1741.18Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JUT2_9PHAE1.830e-1741.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZE6_9PHAE2.290e-1741.18Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K6P8_9PHAE3.440e-1740.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K259_9PHAE4.010e-1741.18Endo/exonuclease/phosphatase domain-containing pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13228contigH-elongata_contig13228:4758..5144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.4371822-CDS-H-elongata_contig13228:4757..51441622929785.4371822-CDS-H-elongata_contig13228:4757..5144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13228 4758..5144 +
1691679156.7599695-CDS-H-elongata_contig13228:4757..51441691679156.7599695-CDS-H-elongata_contig13228:4757..5144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13228 4758..5144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13228.2315.1prot_H-elongata_contig13228.2315.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13228 4758..5144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13228.2315.1

>prot_H-elongata_contig13228.2315.1 ID=prot_H-elongata_contig13228.2315.1|Name=mRNA_H-elongata_contig13228.2315.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
DCNVIGLQEAKREGVSELMTSRYRVYCSGDYSGVKEEKGQHGVGLAIKEE
IVNKVSKDGIAIEGISARLLKAGVSIKSNFVTFVVAYAPTEETTEGQKAK
FLHPLTAPDHQCPLGDVFILTDANDKTGK
back to top

mRNA from alignment at H-elongata_contig13228:4758..5144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13228.2315.1 ID=mRNA_H-elongata_contig13228.2315.1|Name=mRNA_H-elongata_contig13228.2315.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at H-elongata_contig13228:4758..5144+ (Himanthalia elongata Himel1 dioecious)
GATTGTAATGTGATTGGACTGCAGGAGGCAAAACGGGAAGGAGTATCTGA ACTAATGACATCTAGATACCGGGTCTATTGCAGTGGTGACTACAGCGGGG TCAAAGAGGAAAAGGGGCAGCATGGGGTGGGACTAGCGATAAAGGAGGAG ATCGTTAACAAGGTCAGCAAGGACGGCATCGCAATAGAGGGCATCAGCGC ACGTCTCCTAAAGGCTGGAGTATCAATTAAATCAAATTTCGTTACGTTTG TAGTAGCCTACGCTCCGACCGAGGAAACGACGGAAGGGCAGAAGGCCAAG TTTTTGCATCCCTTAACAGCACCGGATCATCAGTGCCCGCTCGGGGACGT CTTCATTTTGACCGACGCGAATGATAAGACAGGAAAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig13228:4758..5144+

>mRNA_H-elongata_contig13228.2315.1 ID=mRNA_H-elongata_contig13228.2315.1|Name=mRNA_H-elongata_contig13228.2315.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig13228:4758..5144+ (Himanthalia elongata Himel1 dioecious)
GATTGTAATGTGATTGGACTGCAGGAGGCAAAACGGGAAGGAGTATCTGA
ACTAATGACATCTAGATACCGGGTCTATTGCAGTGGTGACTACAGCGGGG
TCAAAGAGGAAAAGGGGCAGCATGGGGTGGGACTAGCGATAAAGGAGGAG
ATCGTTAACAAGGTCAGCAAGGACGGCATCGCAATAGAGGGCATCAGCGC
ACGTCTCCTAAAGGCTGGAGTATCAATTAAATCAAATTTCGTTACGTTTG
TAGTAGCCTACGCTCCGACCGAGGAAACGACGGAAGGGCAGAAGGCCAAG
TTTTTGCATCCCTTAACAGCACCGGATCATCAGTGCCCGCTCGGGGACGT
CTTCATTTTGACCGACGCGAATGATAAGACAGGAAAAGATTGTAATGTGA
TTGGACTGCAGGAGGCAAAACGGGAAGGAGTATCTGAACTAATGACATCT
AGATACCGGGTCTATTGCAGTGGTGACTACAGCGGGGTCAAAGAGGAAAA
GGGGCAGCATGGGGTGGGACTAGCGATAAAGGAGGAGATCGTTAACAAGG
TCAGCAAGGACGGCATCGCAATAGAGGGCATCAGCGCACGTCTCCTAAAG
GCTGGAGTATCAATTAAATCAAATTTCGTTACGTTTGTAGTAGCCTACGC
TCCGACCGAGGAAACGACGGAAGGGCAGAAGGCCAAGTTTTTGCATCCCT
TAACAGCACCGGATCATCAGTGCCCGCTCGGGGACGTCTTCATTTTGACC
GACGCGAATGATAAGACAGGAAAA
back to top