prot_H-elongata_contig132230.2313.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig132230.2313.1
Unique Name	prot_H-elongata_contig132230.2313.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	77

Homology

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BLAST of mRNA_H-elongata_contig132230.2313.1 vs. uniprot
Match: A0A6H5KGY7_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGY7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.700e-38
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 0

Query:    1 SLTASLNEKALQARALEQFLYSLPDVNQDGLITRFEFDKYMNEYKRTHPGLSDRDLPRFEDMDHNSNGHINFREARE 77
            SLTASLNEK +Q++ LEQFLYSLPD NQDGLITRFEFDKYMNEYKR HPGL+D DLPRFEDMDHN+NGHINF E  E
Sbjct:  144 SLTASLNEKVIQSKKLEQFLYSLPDTNQDGLITRFEFDKYMNEYKRAHPGLTDHDLPRFEDMDHNNNGHINFHEWEE 220

[Close]

BLAST of mRNA_H-elongata_contig132230.2313.1 vs. uniprot
Match: A0A7S2LGL3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGL3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.960e-8
Identity = 24/57 (42.11%), Postives = 40/57 (70.18%), Query Frame = 0

Query:   21 YSLPDVNQDGLITRFEFDKYMNEYKRTHPGLSDRDLPRFEDMDHNSNGHINFREARE 77
            +  PDV+ D  I+R EF+ Y+  Y   +PGL+++D+P+FED DH+++G ++F E  E
Sbjct:  150 FKQPDVDGDDRISRAEFNHYVKNYLSNYPGLTEKDMPKFEDFDHDNDGSVSFSEYAE 206

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig132230.2313.1 vs. uniprot

BLAST of mRNA_H-elongata_contig132230.2313.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KGY7_9PHAE	1.700e-38	83.12	EF-hand domain-containing protein n=2 Tax=Ectocarp...	[more]
A0A7S2LGL3_9STRA	2.960e-8	42.11	Hypothetical protein (Fragment) n=1 Tax=Leptocylin...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.238.10		coord: 1..77 e-value: 2.8E-7 score: 32.7
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 25..37
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 18..74

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig132230	contig	H-elongata_contig132230:81..1604 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig132230.2313.1	mRNA_H-elongata_contig132230.2313.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig132230 81..1604 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig132230.2313.1 ID=prot_H-elongata_contig132230.2313.1|Name=mRNA_H-elongata_contig132230.2313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
SLTASLNEKALQARALEQFLYSLPDVNQDGLITRFEFDKYMNEYKRTHPG
LSDRDLPRFEDMDHNSNGHINFREARE

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018247	EF_Hand_1_Ca_BS
IPR011992	EF-hand-dom_pair