mRNA_H-elongata_contig132212.2312.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132212.2312.1
Unique NamemRNA_H-elongata_contig132212.2312.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132212.2312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132212contigH-elongata_contig132212:208..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size334
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132212.2312.1prot_H-elongata_contig132212.2312.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132212 224..526 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.189969-UTR-H-elongata_contig132212:207..2231622929785.189969-UTR-H-elongata_contig132212:207..223Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132212 208..223 +
1691679156.6616404-UTR-H-elongata_contig132212:207..2231691679156.6616404-UTR-H-elongata_contig132212:207..223Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132212 208..223 +
1622929785.2222059-UTR-H-elongata_contig132212:526..5411622929785.2222059-UTR-H-elongata_contig132212:526..541Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132212 527..541 +
1691679156.6788056-UTR-H-elongata_contig132212:526..5411691679156.6788056-UTR-H-elongata_contig132212:526..541Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132212 527..541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.2070422-CDS-H-elongata_contig132212:223..5261622929785.2070422-CDS-H-elongata_contig132212:223..526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132212 224..526 +
1691679156.6701715-CDS-H-elongata_contig132212:223..5261691679156.6701715-CDS-H-elongata_contig132212:223..526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132212 224..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132212.2312.1

>prot_H-elongata_contig132212.2312.1 ID=prot_H-elongata_contig132212.2312.1|Name=mRNA_H-elongata_contig132212.2312.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MGVGGWGGGQEMGDWLGHVAALFASCPVAPLLPPSGIRSLRSKVGKQQLA
PGAIVSPSIPRPRRRFGRGVLYDERTQSDGHGRISTGVCSHAFSKQSTWK
*
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mRNA from alignment at H-elongata_contig132212:208..541+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132212.2312.1 ID=mRNA_H-elongata_contig132212.2312.1|Name=mRNA_H-elongata_contig132212.2312.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=334bp|location=Sequence derived from alignment at H-elongata_contig132212:208..541+ (Himanthalia elongata Himel1 dioecious)
GCGGGTTCTTCAAAAGATGGGAGTTGGGGGATGGGGGGGGGGGCAAGAAA
TGGGGGATTGGTTAGGGCACGTTGCTGCGCTTTTCGCTTCCTGTCCCGTC
GCACCGCTTTTGCCGCCTTCCGGCATCCGGTCTCTTAGGTCAAAAGTGGG
AAAGCAGCAGCTAGCTCCGGGTGCGATTGTCTCCCCATCGATACCCAGAC
CTCGGCGCCGATTTGGACGGGGGGTGTTGTATGACGAACGCACTCAGTCT
GACGGTCACGGAAGAATAAGTACGGGCGTTTGTAGCCACGCTTTCTCAAA
ACAAAGCACGTGGAAGTAAAAACAATAGAGAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig132212:208..541+

>mRNA_H-elongata_contig132212.2312.1 ID=mRNA_H-elongata_contig132212.2312.1|Name=mRNA_H-elongata_contig132212.2312.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig132212:208..541+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGTTGGGGGATGGGGGGGGGGGCAAGAAATGGGGGATTGGTTAGG
GCACGTTGCTGCGCTTTTCGCTTCCTGTCCCGTCGCACCGCTTTTGCCGC
CTTCCGGCATCCGGTCTCTTAGGTCAAAAGTGGGAAAGCAGCAGCTAGCT
CCGGGTGCGATTGTCTCCCCATCGATACCCAGACCTCGGCGCCGATTTGG
ACGGGGGGTGTTGTATGACGAACGCACTCAGTCTGACGGTCACGGAAGAA
TAAGTACGGGCGTTTGTAGCCACGCTTTCTCAAAACAAAGCACGTGGAAG
TAAATGGGAGTTGGGGGATGGGGGGGGGGGCAAGAAATGGGGGATTGGTT
AGGGCACGTTGCTGCGCTTTTCGCTTCCTGTCCCGTCGCACCGCTTTTGC
CGCCTTCCGGCATCCGGTCTCTTAGGTCAAAAGTGGGAAAGCAGCAGCTA
GCTCCGGGTGCGATTGTCTCCCCATCGATACCCAGACCTCGGCGCCGATT
TGGACGGGGGGTGTTGTATGACGAACGCACTCAGTCTGACGGTCACGGAA
GAATAAGTACGGGCGTTTGTAGCCACGCTTTCTCAAAACAAAGCACGTGG
AAGTAA
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