mRNA_H-elongata_contig13219.2308.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13219.2308.1
Unique NamemRNA_H-elongata_contig13219.2308.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: B1N8E9_9PHAE (Glutathione S-transferase 4 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E9_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 7.820e-54
Identity = 94/199 (47.24%), Postives = 138/199 (69.35%), Query Frame = 1
Query:   43 PITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSEFKYLPVLQINGINYSQSTSLLRYVGNLAGLLPKDPLGALKVDEVVMIAEDLFIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEWYSSK 639
            P    YF  P R EA R++L + G++++D+ ++F+E  + EFK LPV Q++G +Y+QST+LLRY G L G  P+ PL +LKVDE+VMIAED+FI + +TM  KD  K+LE  +    GKIKD+LE +  K  A+  S F  G S+TIAD+ +HA++ ++++G   GIP T+V D+ PSLK +   VM++PKVK +Y+SK
Sbjct:    2 PAVFNYFGIPARGEATRVALAVAGVDYEDKRMSFEEFGACEFKTLPVYQMDGTDYTQSTALLRYAGKLGGQYPECPLASLKVDEIVMIAEDVFINLFSTMGEKDEAKKLEKCQTLMAGKIKDLLEDIARKVEANKCSTFCVGASLTIADIQVHAVIATVQAGFLTGIPTTMVEDICPSLKALDHAVMEHPKVKAYYASK 200          
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: D7G537_ECTSI (Glutathione S-transferase n=4 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G537_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 5.330e-44
Identity = 90/204 (44.12%), Postives = 128/204 (62.75%), Query Frame = 1
Query:   34 MTAPITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSEF--KYLPVLQINGINYSQSTSLLRYVGNLAGLLPKDPLGALKVDEVVMIAEDLFIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEWYSSK 639
            M +  TL YF  PGR EA R++L   G +F+D  + F E  + ++  K LPVL+++   Y+QST+LLRY G L GL P D L ALKVDE+VMIAED+   +   M  +D        K   EGKIK ++  L  K +A+PSSKFF G S TIADL +HA++ + E+    G+P T ++D AP+L  +   ++++PKVK +Y+SK
Sbjct:    1 MPSTATLNYFGLPGRGEATRVALAYAGKDFEDNRMGFPEYGACKWAGKGLPVLEMDDAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIAEDVMANMFKCMGQEDDT----VAKEVLEGKIKTLVGMLVAKLAANPSSKFFVGNSPTIADLQVHAVIKNFEANFLTGLPTTHIADTAPTLMEMQAALLEDPKVKAYYASK 200          
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: D7G5G1_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G1_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.550e-35
Identity = 83/198 (41.92%), Postives = 122/198 (61.62%), Query Frame = 1
Query:   34 MTAPITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSEFKY--LPVLQINGINYSQSTSLLRYVGNLAGLLPKDPLGALKVDEVVMIAEDLFIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLL--IHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPK 615
            M +  TL+YF+ PGRAEA R++L   G +F+D  + F E  +S++    LPVL+++   Y+QST+LLRY G L GL P D L ALKVDE+VMIAED+   +   +  KD            EGKIK ++E L  + +A+ SSKFF G   TIADL   +HA++ + E+    G+P T ++D AP+L  +   ++++PK
Sbjct:    1 MPSTATLHYFDDPGRAEATRVALAYAGKDFEDNIMGFPEYGASKWAGIGLPVLEMDDAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIAEDVMANMFKCVDQKDDTMA----NGLLEGKIKTLVEMLTSRLAANASSKFFVGHPPTIADLQARVHAVIKNFEANFLTGLPTTHIADTAPTLMEMQAALLEDPK 194          
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: D7G5G0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G0_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 2.260e-33
Identity = 78/155 (50.32%), Postives = 99/155 (63.87%), Query Frame = 1
Query:   34 MTAPITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSEF--KYLPVLQINGINYSQSTSLLRYVGNLAGLLPKDPLGALKVDEVVMIAEDLFIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADL 492
            M++  TL YF  PGRAEA R++L   G EF D+ LTF E  + ++  K LPVLQ++G  Y+QST+LLRY G L GL P D L ALKVDE+VMI ED+   +   M  +D        K   EGK+K ++E L  K +A+PSSKFF G S TIADL
Sbjct:    1 MSSTPTLNYFELPGRAEATRVALAYAGKEFDDKRLTFPEYGACKWAGKGLPVLQMDGAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIGEDILANMFKCMGAEDDT----VAKGVLEGKVKGLVELLVSKLAANPSSKFFVGTSPTIADL 151          
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: A0A6H5JNS9_9PHAE (GST C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS9_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 7.220e-32
Identity = 75/186 (40.32%), Postives = 112/186 (60.22%), Query Frame = 1
Query:   70 PGRAEAIRISLVLGGIEFKDEHLTFQELRSSEF--KYLPVLQINGINYSQSTSLLRYVGNLAGLLPKDPLGALKVDEVVMIAEDLFIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVK 621
            PGR EA  ++L  GG +F D  + F E  + ++  K LPVL+++   Y QST+LLRY G + GL P D L AL+VDE+VMIAED+   +   M   D        K   EGKIK ++E L  K + + SSKFF G S TIA+L +HA++ + E+     +P T+++D AP++  + + ++ +PK K
Sbjct:   55 PGRGEATGVALAYGGKDFVDNTMGFSEHGACKWAGKGLPVLEMDDAEYFQSTALLRYAGKMGGLYPDDALAALEVDEIVMIAEDVLTNMFKCMGQTDDT----VAKGVLEGKIKTLVEMLVAKLATNQSSKFFVGNSPTIANLQVHAVIKNFEANFLTDLPTTLIADTAPTVMEMEVALLQDPKEK 236          
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: A0A2P4WXS9_9STRA (Glutathione S-transferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXS9_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.980e-29
Identity = 81/204 (39.71%), Postives = 128/204 (62.75%), Query Frame = 1
Query:   46 ITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSE----FKYLPVLQINGINYSQSTSLLRYVGNLAGLLPK-DPLGALKVDEVVMIAEDLFIAVG--TTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEWYSS 636
            + L YF  PGRAE IR++  +GGIEF+DE L+F+E    +    F  LP+L++NG   SQS ++LRY G+LAGL P  D L +  VDE+ ++ ++++       T+  +DPEKQ + R+  ++  I   LE LE K+ A+ +  F  G  +T+ADL I+A+++SL++G+  GIP T ++D   +L  +   V  +PKV EWY++
Sbjct:  214 LKLTYFPIPGRAEPIRLAFFIGGIEFEDERLSFEEYEKVKSELPFNQLPILEVNGEPVSQSLAILRYAGSLAGLYPTTDMLESFHVDEIFVLIDEMYNKPEWRATVRERDPEKQKKMRENLSKEIIPKTLEFLE-KRVAAFNGSFATGTHLTVADLAIYALILSLKAGR-PGIP-TNITDPYKNLLCVFDQVKAHPKVVEWYAA 414          
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: A0A6A3RLV1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RLV1_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.720e-29
Identity = 79/207 (38.16%), Postives = 131/207 (63.29%), Query Frame = 1
Query:   37 TAPITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSE----FKYLPVLQINGINYSQSTSLLRYVGNLAGLLPK-DPLGALKVDEVVMIAEDLFIAVG--TTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEWYSS 636
            T  + L YF  PGRAE IR++  +GGI+F+DE L+F E    +    F  LP+L+++G   SQS ++LR+ G++ GL P  DPL A +VDE+ ++ +++F +     T+  +D +K L+ R+  A+G I   L+ LE K+ A+   ++  G+++T+ADL I+A+V+ L++G+  GIP TI +D   +L+ +   V  +PKV EW S+
Sbjct:  211 TPKLKLTYFPLPGRAEPIRLAFYIGGIDFEDERLSFDEFAEVKSRLPFNQLPMLEVDGEAISQSLAILRFAGSITGLYPTTDPLAAFRVDEIFVLIDEMFNSPAWRETVTERDHDKLLKMREGLAKGIIPKTLDFLE-KRVAAFKGQYATGKALTVADLAIYAVVLLLKAGR-PGIPITI-ADPYENLQRVFGQVKAHPKVVEWNSA 414          
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: A0A662XXB3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXB3_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.330e-28
Identity = 83/208 (39.90%), Postives = 125/208 (60.10%), Query Frame = 1
Query:   37 TAP-ITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSE----FKYLPVLQINGINYSQSTSLLRYVGNLAGLLPK-DPLGALKVDEVVMIAEDL--FIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEWYSS 636
            TAP + L Y   PGRAEAIR++  +GGIEF+DE +  ++L S +    F  +P L+++G   +QS +++RY G L+GL P  D L A +VDE+  I +D+  F   G ++  KDP KQLE RK  A G +   L  LE K+ A     +  G ++T+ADL+I+ +V+SL+ G   G+P TI      +L+ I   V+ +PKV EW ++
Sbjct:  210 TAPKLKLTYMPHPGRAEAIRLAFFIGGIEFEDERIPREDLASRKSSLPFNQVPALEVDGEVVAQSLAIIRYAGTLSGLYPTTDMLTAYRVDELFAIIDDMYNFPTWGASVREKDPAKQLELRKELASGMVPKTLGFLE-KRVAQFKGPYATGANLTVADLVIYGMVLSLKVGA-PGLPSTITGSYT-NLQRIFAQVVAHPKVAEWNAA 414          
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: A0A1V9YG44_9STRA (Glutathione S-transferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YG44_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.050e-28
Identity = 71/199 (35.68%), Postives = 117/199 (58.79%), Query Frame = 1
Query:   46 ITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSE----FKYLPVLQINGINYSQSTSLLRYVGNLAGLLPK-DPLGALKVDEVVMIAEDLFIAVGTTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEW 627
            + + YF+ PGRAE  R++L +  I F+DE LT ++  + +    FK LP L +NG   +QS  + RY  +L GL P  DPL A ++DE++   +D+  A+   M  +D +K+ E  K   E K+  +L  +E +    P++K+F G+ +++AD+ ++    +L SGK+EGIPKT+V D  P  K +   V  +P+V+ W
Sbjct:    6 LKITYFDMPGRAELTRLALFVSDIPFEDERLTGEQFGARKPSLPFKQLPTLTVNGEVLAQSHPMARYAASLGGLYPAADPLAAYRIDEILAANQDVLNAMIAAMFTRDLDKKPELIKELVETKLPQMLPCIEARL---PTTKYFLGDKLSLADIDLYLSYTNLSSGKWEGIPKTLV-DGYPRWKALSASVAAHPRVEAW 200          
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Match: A0A662Y425_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y425_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.500e-28
Identity = 82/207 (39.61%), Postives = 124/207 (59.90%), Query Frame = 1
Query:   37 TAPITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELR----SSEFKYLPVLQINGINYSQSTSLLRYVGNLAGLLPK-DPLGALKVDEVVMIAEDLFIAVGTTMAIK--DPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITIADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEWYSS 636
            T  + L Y   PGRAE IR++  +GGIEF+DE L+F++L     +  F  +PVL+++G   +QS ++LRY G+LAGL P  D L A +VDE + + +D+F     T A +  DP KQLE R   A G +   L  LE K+ A     +  G S T+ADL+I+A++++L++    GIP TI +D   +L+ +   V  +PKV EW ++
Sbjct:  211 TPKLKLTYAPLPGRAEPIRLAFFIGGIEFEDERLSFEDLAKLFPTLPFNQVPVLEVDGEVVAQSGAILRYAGSLAGLYPTTDMLAAYRVDEFLALIDDMFNFPDWTCANREQDPAKQLELRAGMANGIVPKTLGFLE-KRVAQFKGPYATGASFTVADLVIYALLVTLKTRGVRGIPVTI-TDSYGNLQRVFNQVKAHPKVAEWNAA 415          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13219.2308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B1N8E9_9PHAE7.820e-5447.24Glutathione S-transferase 4 n=1 Tax=Laminaria digi... [more]
D7G537_ECTSI5.330e-4444.12Glutathione S-transferase n=4 Tax=Ectocarpus silic... [more]
D7G5G1_ECTSI1.550e-3541.92Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D7G5G0_ECTSI2.260e-3350.32Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JNS9_9PHAE7.220e-3240.32GST C-terminal domain-containing protein n=1 Tax=E... [more]
A0A2P4WXS9_9STRA1.980e-2939.71Glutathione S-transferase n=1 Tax=Phytophthora pal... [more]
A0A6A3RLV1_9STRA2.720e-2938.16Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A662XXB3_9STRA1.330e-2839.90Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A1V9YG44_9STRA2.050e-2835.68Glutathione S-transferase n=1 Tax=Achlya hypogyna ... [more]
A0A662Y425_9STRA2.500e-2839.61Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13219contigH-elongata_contig13219:1583..5399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue5.9e-29
Seed eggNOG ortholog36331.EPrPI00000020200
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K04097
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00590,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
GOsGO:0008150,GO:0010033,GO:0014070,GO:0042221,GO:0042493,GO:0045472,GO:0046677,GO:0050896,GO:0097327,GO:1901654,GO:1901700,GO:1904643
EggNOG free text desc.Glutathione S-transferase. Source PGD
EggNOG OGs1MFV7@121069,KOG1695@1,KOG1695@2759
EC2.5.1.18,5.3.99.2
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Hectar predicted targeting categoryother localisation
Exons6
Model size1472
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13219.2308.1prot_H-elongata_contig13219.2308.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13219 1616..4572 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.6293554-UTR-H-elongata_contig13219:1582..16151622929784.6293554-UTR-H-elongata_contig13219:1582..1615Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13219 1583..1615 +
1691679156.3904748-UTR-H-elongata_contig13219:1582..16151691679156.3904748-UTR-H-elongata_contig13219:1582..1615Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13219 1583..1615 +
1622929784.7370427-UTR-H-elongata_contig13219:4572..53991622929784.7370427-UTR-H-elongata_contig13219:4572..5399Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13219 4573..5399 +
1691679156.464908-UTR-H-elongata_contig13219:4572..53991691679156.464908-UTR-H-elongata_contig13219:4572..5399Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13219 4573..5399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.6418707-CDS-H-elongata_contig13219:1615..17711622929784.6418707-CDS-H-elongata_contig13219:1615..1771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13219 1616..1771 +
1691679156.4021335-CDS-H-elongata_contig13219:1615..17711691679156.4021335-CDS-H-elongata_contig13219:1615..1771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13219 1616..1771 +
1622929784.6550217-CDS-H-elongata_contig13219:2154..22501622929784.6550217-CDS-H-elongata_contig13219:2154..2250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13219 2155..2250 +
1691679156.4100091-CDS-H-elongata_contig13219:2154..22501691679156.4100091-CDS-H-elongata_contig13219:2154..2250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13219 2155..2250 +
1622929784.670519-CDS-H-elongata_contig13219:2567..26481622929784.670519-CDS-H-elongata_contig13219:2567..2648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13219 2568..2648 +
1691679156.4268599-CDS-H-elongata_contig13219:2567..26481691679156.4268599-CDS-H-elongata_contig13219:2567..2648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13219 2568..2648 +
1622929784.6857908-CDS-H-elongata_contig13219:3409..35381622929784.6857908-CDS-H-elongata_contig13219:3409..3538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13219 3410..3538 +
1691679156.4377892-CDS-H-elongata_contig13219:3409..35381691679156.4377892-CDS-H-elongata_contig13219:3409..3538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13219 3410..3538 +
1622929784.7029543-CDS-H-elongata_contig13219:3984..41041622929784.7029543-CDS-H-elongata_contig13219:3984..4104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13219 3985..4104 +
1691679156.4474254-CDS-H-elongata_contig13219:3984..41041691679156.4474254-CDS-H-elongata_contig13219:3984..4104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13219 3985..4104 +
1622929784.7213645-CDS-H-elongata_contig13219:4542..45721622929784.7213645-CDS-H-elongata_contig13219:4542..4572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13219 4543..4572 +
1691679156.4563901-CDS-H-elongata_contig13219:4542..45721691679156.4563901-CDS-H-elongata_contig13219:4542..4572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13219 4543..4572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13219.2308.1

>prot_H-elongata_contig13219.2308.1 ID=prot_H-elongata_contig13219.2308.1|Name=mRNA_H-elongata_contig13219.2308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
MTAPITLYYFNFPGRAEAIRISLVLGGIEFKDEHLTFQELRSSEFKYLPV
LQINGINYSQSTSLLRYVGNLAGLLPKDPLGALKVDEVVMIAEDLFIAVG
TTMAIKDPEKQLEARKAAAEGKIKDVLEALEVKKSASPSSKFFFGESITI
ADLLIHAIVMSLESGKFEGIPKTIVSDVAPSLKNIHIDVMDNPKVKEWYS
SKK*
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mRNA from alignment at H-elongata_contig13219:1583..5399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13219.2308.1 ID=mRNA_H-elongata_contig13219.2308.1|Name=mRNA_H-elongata_contig13219.2308.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3817bp|location=Sequence derived from alignment at H-elongata_contig13219:1583..5399+ (Himanthalia elongata Himel1 dioecious)
TGCACACGAAGATCTCACTCCCGTAGGATAACCATGACGGCACCAATCAC CCTCTACTACTTCAACTTTCCGGGGCGTGCCGAGGCCATCCGCATTTCTC TAGTTCTAGGAGGCATTGAATTCAAGGATGAACACCTCACGTTTCAGGAG CTCAGATCGTCGGAGTTTAAGTACCTCCCGGTCTTGCAAGTGAGTCCGCT CCGCTATCTGTATCACGACGAAACATAAAACGACTACTTGATTAGCAGGT GCTTAGGGCTGCGTAGCACTTACAACGATATTTCCGCAGGACGGTTTAAT GCGCTATCGGCGATAATGATGACGCTTCTCGCTCGCGATAAGAGAGAAGC GATTTCGAGTGCAGATGTTTTCGGGGAAGTTGGAAAACTCTGACATACGT TCGGTGCGCCGTATGGCAGTGTTCCTTTTATTTTGAATGGAATCATTTGG GATGATGTGGGGTGCTTTAGTCGTCACGTTATAGGCGAATATAACCGCAC AAGAGATACATATAGTGTTGGTATCGGTACCCTTACATACACCTCCGCTT TGCGAATCGCATGTTATATCAGATTAACGGCATCAACTACAGCCAGTCCA CGTCCTTGCTCCGGTACGTCGGAAATCTGGCAGGCCTCTTGCCCAAGGAC CCACTGGGAGCTCTAAAGGCGAGGCGGGATGTATCAGTACATAATATTCT TTGCATATAGACACTATACTTCTCATGCCTCCGCTGGGAGGTAGTGCTAA GTAATCTATACTCACCCCCGAATAACGAATTGCCGTATGCCGATAAATAT ATCAAAATACTTCACAGCGCGCGCATTGAGCCGAGCCTCCCCGCGAAAAT TGTTGCTGGCGGCGTACAACGTCGAACACTGTAGCACTATTTTATCTCGG CGGTGGCATTTAGTGCACCATTCAGAATTGGTCCATTAAAATTTATATAT TTATCCGTCCAAGCTTGCCAACGCCGGCCAATCAGGTGGACGAGGTCGTG ATGATAGCGGAGGACTTGTTCATCGCCGTTGGTACAACTATGGCCATCAA GGATCCGGAAAAGCAGGCAGGCTTGCGCGCGCCCGACTTTCTCCCCCACT GCGTGTTTTAACGGATTTCTTTAAAAGCGATTTATTTACCCAACGCCCGG GTTTCTCATTTTGGCGACACGATGAGCATGCCTACACCATCCTCCATTTA TGTAAATAAAAGGGCTACTTGCTTCGCAGTCATGTGCATTCAACGGGAGA GAACTATTTAACGAAGGAGCAGCCCCACTGCCTGTATGTGCTCGAACCCG CAGCTTCTTCGGAAGATATATTTAAGTGCATGTATTCCCTCGTGGTCTAT ATAGCCTCCAATACTGCACTTTATGATATGACATATATGTCTACCGTACC AATAGTGAGAGCGGGAAAAGAGGCAAATAAAAATTGGTCCATGGGGCTAT CTGAAAAGGCAGCACCCGTTACTCCGGTAGCTTGAGAACTACCGATCATG TGCCGGCGGACTCGGTGGTGAACGCCATATGTACCCAATTGAATGACCTG ATGAGCATCGGACTGACCCCATGACAATCATACCGTCTAGAATCTCCCAT TTAAATAAAGGGGTGGTGGCAAGTCCCGTTTGTTTGGATATCTCCCGTCT CTAAACTCGAGCTTGCCGTGATAAGAAAAGGGATATATTTTCTATCGATC TTTTCCGCAAGCGCACCTTCTTTCATATGTATGTACACGGTATCCGCCTG CTGCCTCCACCTCCTACTACCCCTTCTGGTCGGACTGCTTGTGGATTTAA CGGTTGCTGCCCTTTGACGTCTTTCAGCTCGAGGCACGCAAGGCAGCTGC CGAAGGAAAGATTAAGGATGTACTGGAAGCGCTGGAAGTGAAGAAATCAG CATCCCCATCCTCTAAATTCTTCTTTGGGGAGTCCATTACTATCGCCGAC CTCCTGGTGAGAGATGAAGATACGGTTTGTGTTCCAACTCGGCACCCCTC CGCCCGCCGGCTAATATATTTGGTTTGGGAGTTTGATTACGGAAGATCGC CCAGGGGGTATCCTATCTTCACAATATTAAAAAAACAAAACACGGACACC ATCTTCGATGAGGCGGTAAAGTTTATCTAGTTCAGATCGTTCCCCGTAAG CATATGATTTTTTCATCGCGATCGGGGGTGGGAAGGGGGGGCGAGAGTTT TGCCAACAAACCCTAAACCTGGAGGCGCATCGGTCGTCACCTGGAGCTAT TCATGAACATATCCTCCGCTTGCAGGTGGCCAGTGCTCCCAACTTCATGT TTATGCTTTGATAATTTCTCGAACAGCTTCTTTTGACCTTCCTGATAAAA CTACTTTTTCCTCCTCTTACCTTGCTGTGCCTCCGATCGCAATCTTGTCC AGATTCATGCAATAGTTATGTCACTAGAGTCTGGCAAATTTGAAGGAATT CCGAAGACCATCGTCTCAGACGTGGCCCCTTCTCTCAAGAATATCCATAT CGACGTCATGGATAACCCCAAGGTATGACATTCGCTCTTCATACTGGTCG GCATTCTTCACTGCCGTATTTCTTCTCATAGGATCGCTGCCGAGCTCGGC ATGAAACATTTCCGTTTGATATCCGCTACCATACCAGCGTCTCGTCGGGT CGATATTTTCATCAATGCCAGCCAATTGAGACAGTAGGTATGATTAACAC CCCGATAACCCATGTACCAGTTGCTTCACCGAGCAATTACCCCCTCCTCC CCACGCATCGCTAAATTTCGACAAAGCTGATATATTTTCTCGCTTTAATG ATTCTTATATCTTTCAGACAATTTCGCGTCTTTAGGCTCGTCGTTTCAGA TGCGCGCACGCCAGTTCCACAGTTGTAGGGCATCAGAGGAAGTTGAGATG TATTCTTTCATAACTTTCGACATTATCCCGGCCACATTCTTCTGTACGTT TACTCCACAGGTCAAGGAGTGGTACTCTTCGAAGAAGTAATTGATTCGTG GGGGAAACGTCTCAAGGCGTGTGAAGCTTTCGAAGAGTGGGGGGTGTGAG AGTAGCGCGCAAACAAGAAAGAACTGCAAGGCGGAACTCTTTTATGAATG TAGTATGGATCTTCCAAAAAATTCCCACGACCACGCGTAAGACGTCGGCA TGGCGGGACACGTCATGATTCGAAAGAGAAATGATATATATGCTTGAGGC ATATCAAGAATTAACTGATTTGTACTTTGATGCCTCTACCAATAGGGGGA ATGCGGGTTGAGGGATAAATAGATGTGCGCGGTCCAAAGAAGGATAGCAC GGTTTTGTAACGACTGCAAAAATTTCTCCAATGTCTAGAGCGTTTTTTGG TGCAGCATGACTAAAGCCAAAGAGCTCCGTGGGCTGGAGCTTGCCTTTGT TGAAGTTCGGGCAGCAGCTTATCTGCTATTCGCTTTGCTTGGAAAGGGAA ATATATTCCCATCTAACAGATGGTGACGAATCGTAACCAGTGATGAACAT TGTTTCGGTGAGTTTAATGGCGTTGAGAATGCGATACTATAAAAAGCGAG GTGACGAATCGCAACCAGCCCAGCCCAACTCAGCAGCACATCATGCATCA CGCTGGAAACTACGCCGACCAGGTTTTCAGAGTACGTCTGATTCCATATC ATAGTCTTCACACTTGGTTGGTACAAGAAAAATAGTATAAAAAGGAATCC CCCGCCCAAACGCGACGGACAGAAATCAGGAGAGGATAGCCCAAAACAAG CTTGCTTGTGCGGGTTTGCTCGCCATACATAGTGAATGAGTCAGAAGTGG TGCGAACTTGTATCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig13219:1583..5399+

>mRNA_H-elongata_contig13219.2308.1 ID=mRNA_H-elongata_contig13219.2308.1|Name=mRNA_H-elongata_contig13219.2308.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig13219:1583..5399+ (Himanthalia elongata Himel1 dioecious)
ATGACGGCACCAATCACCCTCTACTACTTCAACTTTCCGGGGCGTGCCGA
GGCCATCCGCATTTCTCTAGTTCTAGGAGGCATTGAATTCAAGGATGAAC
ACCTCACGTTTCAGGAGCTCAGATCGTCGGAGTTTAAGTACCTCCCGGTC
TTGCAAATGACGGCACCAATCACCCTCTACTACTTCAACTTTCCGGGGCG
TGCCGAGGCCATCCGCATTTCTCTAGTTCTAGGAGGCATTGAATTCAAGG
ATGAACACCTCACGTTTCAGGAGCTCAGATCGTCGGAGTTTAAGTACCTC
CCGGTCTTGCAAATTAACGGCATCAACTACAGCCAGTCCACGTCCTTGCT
CCGGTACGTCGGAAATCTGGCAGGCCTCTTGCCCAAGGACCCACTGGGAG
CTCTAAAGATTAACGGCATCAACTACAGCCAGTCCACGTCCTTGCTCCGG
TACGTCGGAAATCTGGCAGGCCTCTTGCCCAAGGACCCACTGGGAGCTCT
AAAGGTGGACGAGGTCGTGATGATAGCGGAGGACTTGTTCATCGCCGTTG
GTACAACTATGGCCATCAAGGATCCGGAAAAGCAGGTGGACGAGGTCGTG
ATGATAGCGGAGGACTTGTTCATCGCCGTTGGTACAACTATGGCCATCAA
GGATCCGGAAAAGCAGCTCGAGGCACGCAAGGCAGCTGCCGAAGGAAAGA
TTAAGGATGTACTGGAAGCGCTGGAAGTGAAGAAATCAGCATCCCCATCC
TCTAAATTCTTCTTTGGGGAGTCCATTACTATCGCCGACCTCCTGCTCGA
GGCACGCAAGGCAGCTGCCGAAGGAAAGATTAAGGATGTACTGGAAGCGC
TGGAAGTGAAGAAATCAGCATCCCCATCCTCTAAATTCTTCTTTGGGGAG
TCCATTACTATCGCCGACCTCCTGATTCATGCAATAGTTATGTCACTAGA
GTCTGGCAAATTTGAAGGAATTCCGAAGACCATCGTCTCAGACGTGGCCC
CTTCTCTCAAGAATATCCATATCGACGTCATGGATAACCCCAAGATTCAT
GCAATAGTTATGTCACTAGAGTCTGGCAAATTTGAAGGAATTCCGAAGAC
CATCGTCTCAGACGTGGCCCCTTCTCTCAAGAATATCCATATCGACGTCA
TGGATAACCCCAAGGTCAAGGAGTGGTACTCTTCGAAGAAGTAAGTCAAG
GAGTGGTACTCTTCGAAGAAGTAA
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