mRNA_H-elongata_contig132167.2307.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132167.2307.1
Unique NamemRNA_H-elongata_contig132167.2307.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132167.2307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132167contigH-elongata_contig132167:1245..1817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.5610757-CDS-H-elongata_contig132167:1244..17031622929784.5610757-CDS-H-elongata_contig132167:1244..1703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132167 1245..1703 +
1691679156.3716187-CDS-H-elongata_contig132167:1244..17031691679156.3716187-CDS-H-elongata_contig132167:1244..1703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132167 1245..1703 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.5830033-UTR-H-elongata_contig132167:1703..18171622929784.5830033-UTR-H-elongata_contig132167:1703..1817Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132167 1704..1817 +
1691679156.3801277-UTR-H-elongata_contig132167:1703..18171691679156.3801277-UTR-H-elongata_contig132167:1703..1817Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132167 1704..1817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132167.2307.1prot_H-elongata_contig132167.2307.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132167 1245..1703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132167.2307.1

>prot_H-elongata_contig132167.2307.1 ID=prot_H-elongata_contig132167.2307.1|Name=mRNA_H-elongata_contig132167.2307.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
SFFKLHYTAQTDTTCKGAPCLFANAPPSYGKLLLKTLDWPVLLALLTQPR
RTIVATILPAPVAPPLGATLRRVDISNTTTVPPPSIPSSGKTFILFPIWW
ILATCGTATIATIVTSAIALASVATGAHASIPPAPLLSAAASATGILIDL
ID*
back to top

mRNA from alignment at H-elongata_contig132167:1245..1817+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132167.2307.1 ID=mRNA_H-elongata_contig132167.2307.1|Name=mRNA_H-elongata_contig132167.2307.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at H-elongata_contig132167:1245..1817+ (Himanthalia elongata Himel1 dioecious)
TCGTTTTTTAAATTGCATTACACGGCGCAAACCGACACTACATGTAAGGG
AGCGCCATGCCTATTTGCAAATGCACCTCCTTCTTATGGCAAGCTACTCC
TGAAGACGTTGGATTGGCCTGTCCTACTCGCGTTGCTTACGCAACCGCGC
CGGACTATCGTTGCAACTATCCTTCCTGCTCCCGTTGCCCCTCCTTTGGG
CGCAACACTCCGTCGCGTTGACATTTCGAATACCACCACGGTCCCACCCC
CCTCCATCCCCAGCTCGGGTAAGACCTTCATCCTGTTTCCAATCTGGTGG
ATTCTCGCCACGTGCGGGACAGCCACTATCGCTACCATCGTTACCAGCGC
CATCGCATTAGCCAGTGTGGCAACGGGTGCTCACGCCTCGATTCCTCCCG
CCCCCTTACTCAGCGCTGCAGCATCGGCGACCGGCATATTGATTGATTTG
ATTGATTGAATTCTCACATAAGCTGATGTTAAAATCCAGCCCTTGGTTAC
AAGGTAGAAAAAAAAACACAATAAGAAAAGGAGAAAAAAGATCAAGGTAC
TCTCCAATACAAAAGGAAAATAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig132167:1245..1817+

>mRNA_H-elongata_contig132167.2307.1 ID=mRNA_H-elongata_contig132167.2307.1|Name=mRNA_H-elongata_contig132167.2307.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig132167:1245..1817+ (Himanthalia elongata Himel1 dioecious)
TCGTTTTTTAAATTGCATTACACGGCGCAAACCGACACTACATGTAAGGG
AGCGCCATGCCTATTTGCAAATGCACCTCCTTCTTATGGCAAGCTACTCC
TGAAGACGTTGGATTGGCCTGTCCTACTCGCGTTGCTTACGCAACCGCGC
CGGACTATCGTTGCAACTATCCTTCCTGCTCCCGTTGCCCCTCCTTTGGG
CGCAACACTCCGTCGCGTTGACATTTCGAATACCACCACGGTCCCACCCC
CCTCCATCCCCAGCTCGGGTAAGACCTTCATCCTGTTTCCAATCTGGTGG
ATTCTCGCCACGTGCGGGACAGCCACTATCGCTACCATCGTTACCAGCGC
CATCGCATTAGCCAGTGTGGCAACGGGTGCTCACGCCTCGATTCCTCCCG
CCCCCTTACTCAGCGCTGCAGCATCGGCGACCGGCATATTGATTGATTTG
ATTGATTGATCGTTTTTTAAATTGCATTACACGGCGCAAACCGACACTAC
ATGTAAGGGAGCGCCATGCCTATTTGCAAATGCACCTCCTTCTTATGGCA
AGCTACTCCTGAAGACGTTGGATTGGCCTGTCCTACTCGCGTTGCTTACG
CAACCGCGCCGGACTATCGTTGCAACTATCCTTCCTGCTCCCGTTGCCCC
TCCTTTGGGCGCAACACTCCGTCGCGTTGACATTTCGAATACCACCACGG
TCCCACCCCCCTCCATCCCCAGCTCGGGTAAGACCTTCATCCTGTTTCCA
ATCTGGTGGATTCTCGCCACGTGCGGGACAGCCACTATCGCTACCATCGT
TACCAGCGCCATCGCATTAGCCAGTGTGGCAACGGGTGCTCACGCCTCGA
TTCCTCCCGCCCCCTTACTCAGCGCTGCAGCATCGGCGACCGGCATATTG
ATTGATTTGATTGATTGA
back to top