mRNA_H-elongata_contig13212.2305.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: D8LKP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP8_ECTSI) HSP 1 Score: 174 bits (442), Expect = 2.050e-48 Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = 1
Query: 1 RWEMIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
RW+M+K NPVKG W+ EEDSLLK LV+E+GRK WS+I+TQFPGR+GKQCRERWLNHLD RV K WT ED LC+AQ +LGNKWS+ISKLLPGRAENA+KNR
Sbjct: 122 RWQMVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDMKLCEAQGRLGNKWSEISKLLPGRAENAVKNR 224
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: A0A6H5KU69_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU69_9PHAE) HSP 1 Score: 168 bits (425), Expect = 3.990e-46 Identity = 75/100 (75.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query: 10 MIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
M+K NPVKG W+ EEDSLLK LV+E+GRK WS+I+TQFPGR+GKQCRERWLNHLD RV K WT ED LC+AQ +LGNKWS+ISKLLPGRAENA+KNR
Sbjct: 1 MVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNR 100
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: A0A835Z962_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z962_9STRA) HSP 1 Score: 154 bits (389), Expect = 1.230e-45 Identity = 68/103 (66.02%), Postives = 86/103 (83.50%), Query Frame = 1
Query: 1 RWEMIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
RW++I PVKG WASEED +L+ALV+++G K WS ++T PGRTGKQCRERWLNHLD RV+K +WT EED +L AQ +LGN+WS+IS++LPGRAENA+KNR
Sbjct: 51 RWQIICDLPVKGPWASEEDDVLRALVKQYGNKKWSHVATGLPGRTGKQCRERWLNHLDIRVMKTSWTPEEDELLFDAQRELGNQWSKISRMLPGRAENAVKNR 153
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: F0YHL4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHL4_AURAN) HSP 1 Score: 146 bits (369), Expect = 6.870e-43 Identity = 65/104 (62.50%), Postives = 83/104 (79.81%), Query Frame = 1
Query: 1 RWE-MIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
RWE +++ VKG W EEDSLL+ LV + G K W++I++ PGR GKQCRERWLNHLD RV+K WT +EDAVL +AQ ++GNKWS+I++LLPGRAENA+KNR
Sbjct: 47 RWEAVVRHTAVKGPWLPEEDSLLRQLVNKFGPKRWALIASHIPGRAGKQCRERWLNHLDTRVIKSDWTPDEDAVLLEAQQRVGNKWSEIARLLPGRAENAVKNR 150
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: D7FZ02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ02_ECTSI) HSP 1 Score: 147 bits (371), Expect = 1.040e-39 Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = 1
Query: 1 RWEMIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
RW +K PVKG W+SEED LK LV+E G K W++++ FPGR+GKQCRERW NH+D RV K W+ EED +LC+AQ +LGNKWS++SK+L GR+ENA+KNR
Sbjct: 55 RWNYVKETPVKGPWSSEEDDHLKRLVDEFGSKKWNLLARAFPGRSGKQCRERWHNHVDGRVKKGEWSAEEDQILCEAQRQLGNKWSEMSKILVGRSENAIKNR 157
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: A0A7S2WV82_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV82_9STRA) HSP 1 Score: 147 bits (370), Expect = 9.850e-39 Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 1
Query: 1 RWEMIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
RW ++K NPVKG W EED LL+ LV + G K WS I+ + PGR GKQCRERWLNHLD+ V K WT EED +L +AQ ++GN+WS+I+++LPGRAENA+KNR
Sbjct: 178 RWRVVKNNPVKGPWLPEEDQLLRDLVGQFGPKQWSKIAEKIPGRAGKQCRERWLNHLDSSVKKSDWTPEEDKILLEAQRRVGNRWSEIARMLPGRAENAVKNR 280
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: W7TQR3_9STRA (Myb-related protein a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQR3_9STRA) HSP 1 Score: 144 bits (362), Expect = 8.170e-38 Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 1
Query: 1 RWEMIKTNPVKGTWASEEDSLLKALVEEHGR--KHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
RW+ IK PVKG W+ EED+LL+ LV +G K WSM++ PGR GKQCRERWLNHLD V K W E EDA+LC AQ +LGNKWS+I+KLLPGRAEN++KNR
Sbjct: 189 RWDEIKDVPVKGPWSVEEDALLQLLVGRYGPRPKKWSMLAQHIPGRAGKQCRERWLNHLDRSVKKGEWEEGEDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNR 293
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: K8YTL3_NANGC (V-myb myeloblastosis viral oncogene-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YTL3_NANGC) HSP 1 Score: 144 bits (362), Expect = 9.890e-38 Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 1
Query: 1 RWEMIKTNPVKGTWASEEDSLLKALVEEHGR--KHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
RW+ IK PVKG W+ EED+LL+ LV +G K WSM++ PGR GKQCRERWLNHLD V K W E EDA+LC AQ +LGNKWS+I+KLLPGRAEN++KNR
Sbjct: 60 RWDEIKDVPVKGPWSVEEDALLQQLVGRYGPRPKKWSMLAQHIPGRAGKQCRERWLNHLDRSVKKGEWEEGEDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNR 164
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: D8MAX1_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8MAX1_BLAHO) HSP 1 Score: 140 bits (352), Expect = 5.870e-37 Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 1
Query: 1 RWEMI-KTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
RWE + + VKG W+ EED LL++LVE+HG K WS I++ GR GKQCRERWLNHL V K WTEEED +L AQ ++GNKWS ISKLLPGR+ENA+KNR
Sbjct: 52 RWEQVLRDQTVKGPWSEEEDKLLRSLVEKHGPKKWSTIASHINGRIGKQCRERWLNHLSPDVSKDVWTEEEDEILINAQFQMGNKWSFISKLLPGRSENAVKNR 155
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Match: A0A196SGZ8_BLAHN (Transcriptional activator Myb n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SGZ8_BLAHN) HSP 1 Score: 138 bits (347), Expect = 2.580e-36 Identity = 63/104 (60.58%), Postives = 79/104 (75.96%), Query Frame = 1
Query: 1 RWE-MIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWLNHLDARVVKITWTEEEDAVLCQAQAKLGNKWSQISKLLPGRAENALKNR 309
RWE +++ VKG W+ EED++L++LVE+ G K WS I++ GR GKQCRERWLNHL V K WTEEED +L AQ ++GNKWS ISKLLPGR+ENA+KNR
Sbjct: 52 RWETVLRDQTVKGPWSEEEDAILRSLVEKFGPKKWSTIASYINGRIGKQCRERWLNHLSPTVTKDVWTEEEDEILINAQIQMGNKWSYISKLLPGRSENAVKNR 155 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13212.2305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13212.2305.1 >prot_H-elongata_contig13212.2305.1 ID=prot_H-elongata_contig13212.2305.1|Name=mRNA_H-elongata_contig13212.2305.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp MIKTNPVKGTWASEEDSLLKALVEEHGRKHWSMISTQFPGRTGKQCRERWback to top mRNA from alignment at H-elongata_contig13212:3531..4016+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13212.2305.1 ID=mRNA_H-elongata_contig13212.2305.1|Name=mRNA_H-elongata_contig13212.2305.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig13212:3531..4016+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13212:3531..4016+ >mRNA_H-elongata_contig13212.2305.1 ID=mRNA_H-elongata_contig13212.2305.1|Name=mRNA_H-elongata_contig13212.2305.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig13212:3531..4016+ (Himanthalia elongata Himel1 dioecious)back to top |