mRNA_H-elongata_contig132105.2303.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132105.2303.1
Unique NamemRNA_H-elongata_contig132105.2303.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig132105.2303.1 vs. uniprot
Match: A0A6H5KG13_9PHAE (Sulfatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG13_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 1.040e-111
Identity = 172/256 (67.19%), Postives = 202/256 (78.91%), Query Frame = 1
Query:   52 MSPLPWKFVCSLLVSVLLCGYTSATVEVDFPAVQEVRPLYNDGSTVRPNVLVVVIDDLGWKDVGFHDPAFSTPNLDAMVNEGVELSTFYTAATCTPSRAQLMTGRYAYRIGMQDSVVHSTEPRGVPLSETFIGEKLQAAGYRTAAVGKWHLGMHMPQFLPRQRGFDEFYGILTGGGGHYTHKSVSEDFSPRNSVEGMEGKTRTFSGPNIIDGDELSEDSLDNGMHSTELYNKKAGEYVDDIAGRD-EPWFLYLSYQ 816
            MSP+PW+   + L+++L  G     +     A           +T  PNVLVVV+DDLGWKDVGFHD  FSTPNLDAMV EGVEL+TFYTA TCTPSRAQLMTGRY+YRIGMQDSV+H+ EPRGVPL+ETF+GEKLQAAGY TAAVGKWHLGMHMPQFLP +RGFD+FYGILTGGGGHYTH SVS +F+PR    G  GKTRTFSGPNI++G E+S+D+ D   HSTELY KKA EYV+ ++ ++ +PWFLYLSYQ
Sbjct:    1 MSPVPWRAASAPLLALLGIGRAPQAMGSGSSA-----------TTENPNVLVVVVDDLGWKDVGFHDTTFSTPNLDAMVAEGVELATFYTAPTCTPSRAQLMTGRYSYRIGMQDSVLHTMEPRGVPLTETFVGEKLQAAGYSTAAVGKWHLGMHMPQFLPVERGFDDFYGILTGGGGHYTHMSVSPEFTPR----GGSGKTRTFSGPNIVEGSEVSDDNQDTRTHSTELYTKKAAEYVEAMSAKEGQPWFLYLSYQ 241          
BLAST of mRNA_H-elongata_contig132105.2303.1 vs. uniprot
Match: A0A835ZF60_9STRA (Formylglycine-dependent sulfatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF60_9STRA)

HSP 1 Score: 265 bits (676), Expect = 3.470e-80
Identity = 125/209 (59.81%), Postives = 158/209 (75.60%), Query Frame = 1
Query:  190 RPNVLVVVIDDLGWKDVGFHDPAFSTPNLDAMVNEGVELSTFYTAATCTPSRAQLMTGRYAYRIGMQDSVVHSTEPRGVPLSETFIGEKLQAAGYRTAAVGKWHLGMHMPQFLPRQRGFDEFYGILTGGGGHYTHKSVSEDFSPRNSVEGMEGKTRTFSGPNIIDGDELSEDSLDNGMHSTELYNKKAGEYVDDIAGRDEPWFLYLSYQ 816
            +PN+LVVV+DDLGW DVGF+DP FSTPN++A+  EGV L  FY + TCTP+RAQLMTGRY Y+ GMQDSVVHSTEPRGVPL++ F+ +KLQ AGY TAAVGKWHLGMH  Q+ P +RGFD  YGILTGGGGH  H+SVS+ F+ R +       +RTF G NI +   +S D+     HS+ELY+ KA +Y+ ++  +D PWF+YL+YQ
Sbjct:   13 KPNILVVVVDDLGWSDVGFNDPTFSTPNINALAAEGVNLDAFYVSPTCTPTRAQLMTGRYNYKTGMQDSVVHSTEPRGVPLNQQFLSQKLQRAGYATAAVGKWHLGMHQEQYTPLRRGFDRHYGILTGGGGHTAHRSVSQSFTTRQT-----NVSRTFDGYNIWEDGAVSADNYGT-THSSELYSGKALQYLQELGAQDAPWFVYLAYQ 215          
BLAST of mRNA_H-elongata_contig132105.2303.1 vs. uniprot
Match: A0A7S2BCJ8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCJ8_9STRA)

HSP 1 Score: 227 bits (579), Expect = 1.420e-65
Identity = 113/211 (53.55%), Postives = 144/211 (68.25%), Query Frame = 1
Query:  190 RPNVLVVVIDDLGWKDVGFHDPAFSTPNLDAMVNEGVELSTFYTAATCTPSRAQLMTGRYAYRIGMQDSVVHSTEPRGVPLSETFIGEKLQAAGYRTAAVGKWHLGMHMPQFLPRQRGFDEFYGILTGGGGHYTHKSVSEDFSPRNSVEGMEGKTRTFSGPNIIDGDELSEDSLDNGMHSTELYNKKAGEYVD--DIAGRDEPWFLYLSYQ 816
            +PN++ V+IDDLGW DVG+HD  F+TP + ++   GV L  FYTA TCTPSR+Q MTGRY  R GMQDSV+HSTEPRGVPL+E F+  KLQ +GYRT A+GKWH+GMH   +LP  RGFD  YGI TGGG H  H SVS+ F+ R+  +      + + G NI +    SED+     HST LY+ KA E+VD  +    D P+F+YL+YQ
Sbjct:   41 QPNIVTVMIDDLGWNDVGWHDEKFATPAMSSLAETGVVLERFYTAPTCTPSRSQFMTGRYNIRNGMQDSVLHSTEPRGVPLNEEFLSTKLQTSGYRTVAIGKWHMGMHQSSYLPLSRGFDRHYGIYTGGGSHTGHFSVSQSFTVRHQAD-----AQIWQGYNIWEDGVPSEDNYGK-THSTHLYSGKAAEFVDLFETEDDDTPFFMYLAYQ 245          
BLAST of mRNA_H-elongata_contig132105.2303.1 vs. uniprot
Match: A0A7S2S7R6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7R6_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.240e-64
Identity = 111/217 (51.15%), Postives = 151/217 (69.59%), Query Frame = 1
Query:  172 NDGSTVRPNVLVVVIDDLGWKDVGFHDPAFSTPNLDAMVNE--GVELSTFYTAATCTPSRAQLMTGRYAYRIGMQDSVVHSTEPRGVPLSETFIGEKLQAAGYRTAAVGKWHLGMHMPQFLPRQRGFDEFYGILTGGGGHYTHKSVSEDFSPRNSVEGMEGKTRTFSGPNIIDGDELSEDSLDNGMHSTELYNKKAGEYVDDIAGRDEPWFLYLSYQ 816
            +  S   PNV++V++DD G+ D+ ++D +  TPNL+++ +   G+ L  FYT ATCTPSRA LMTGRY  R G QDSV+HSTEPRG+PL+E  + +KL   GY T AVGKWHLGM  PQ+LP+ RGFD FYGI TGGG H  H SVS+ F+PR+S     G+   ++G N+ D  E SED++ +G H+T LY  +A   +++ AG D P+FLYL++Q
Sbjct:   31 SSASVTPPNVVMVLVDDQGFGDISWNDDSMYTPNLESIASTEGGIVLDYFYTGATCTPSRAMLMTGRYPIRYGFQDSVIHSTEPRGLPLTEKLLPQKLGELGYSTMAVGKWHLGMFTPQYLPQNRGFDSFYGIYTGGGDHLLHVSVSQTFTPRDST----GEPIQWTGSNLWDDGEPSEDNI-SGEHTTTLYTNRAVTLIEEAAGADNPFFLYLAFQ 242          
BLAST of mRNA_H-elongata_contig132105.2303.1 vs. uniprot
Match: A0A8J2SGH0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGH0_9STRA)

HSP 1 Score: 216 bits (551), Expect = 6.600e-62
Identity = 114/226 (50.44%), Postives = 143/226 (63.27%), Query Frame = 1
Query:  190 RPNVLVVVIDDLGWKDVGFHDPAFSTPNLDAMVNEGVELSTFYTAATCTPSRAQLMTGRYAYRIGMQDSVVHSTEPRGVPLSETFIGEKLQAAGYRTAAVGKWHLGMHMPQFLPRQRGFDEFYGILTGGGGHYTHKSVSEDFSPRNSVEGMEGKTRTFSGPNIIDGDELSEDSLDNGMHSTELYNKKAGEYVDDIAGRD-----------------EPWFLYLSYQ 816
            RPN+L+ ++DDLG  DV ++DPA  TP L ++  +GV L  FY AATCTP+RA LMTGR   R GMQDSV+H+TEPRGVPL E F+GEKLQ+AGYRTA VGKWHLG H   + P +RGF+++YGI  GGG H  H SVS+ F+ R       G   T+SG N+ D D  S D+  +  H+T LY  KA EY++                       +PWFLYLSYQ
Sbjct:   24 RPNLLLALVDDLGSGDVQYNDPAMVTPELSSLAEDGVILDRFYAAATCTPARAALMTGRLGIRTGMQDSVIHATEPRGVPLDEVFLGEKLQSAGYRTAMVGKWHLGFHEAAYTPLKRGFEKWYGIFPGGGSHTGHFSVSQPFTARG------GTDVTWSGFNLWDNDAPSADNK-SPTHTTHLYTAKAKEYIETFEAAAPAYAAPPRKTPRKLSIRDPWFLYLSYQ 242          
BLAST of mRNA_H-elongata_contig132105.2303.1 vs. uniprot
Match: A0A7S2FKR7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FKR7_9STRA)

HSP 1 Score: 213 bits (542), Expect = 3.330e-60
Identity = 102/216 (47.22%), Postives = 148/216 (68.52%), Query Frame = 1
Query:  181 STVRPNVLVVVIDDLGWKDVGFHDPAFS--TPNLDAMVNEGVELSTFYTAATCTPSRAQLMTGRYAYRIGMQDSVVHSTEPRGVPLSETFIGEKLQAAGYRTAAVGKWHLGMHMPQFLPRQRGFDEFYGILTGGGGHYTHKSVSEDFSPRNSVEGMEGKTRTF--SGPNIIDGDELSEDSLDNGMHSTELYNKKAGEYVDDIAGRDEPWFLYLSYQ 816
            +  +PN+L++ +DDLG+ D+G+++  F+  T  ++ + N G+ L  FYT+ TCT SRA L+TGR+  R+G+QDSV+HSTEPRGVPL+E  + E+L+  GY+T A+GKWHLG H  Q+LP++RGFDEF+GILTGGG H+ H S          + G E KT  F  +G N+   DE   DS  +G HST++Y +KA E++ +     +PWF+YL+YQ
Sbjct:   13 NVTKPNILILYVDDLGYGDIGYNNVEFAKATRTINRLSNSGIILDQFYTSPTCTASRASLLTGRFPARLGLQDSVIHSTEPRGVPLTEVLLPERLRETGYKTIALGKWHLGFHQTQYLPQKRGFDEFFGILTGGGDHFAHTSTGSFV-----LRGPEYKTTKFLFTGSNMWHNDEHMLDSEIDGFHSTDIYTQKAMEFLKENEDSAQPWFMYLAYQ 223          
BLAST of mRNA_H-elongata_contig132105.2303.1 vs. uniprot
Match: F0Y044_AURAN (Sulfatase domain-containing protein (Fragment) n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y044_AURAN)

HSP 1 Score: 201 bits (511), Expect = 3.670e-60
Identity = 105/215 (48.84%), Postives = 143/215 (66.51%), Query Frame = 1
Query:  190 RPNVLVVVIDDLGWKDVGFH---DPAFSTPNLDAMVNEGVELSTFYTAATCTPSRAQLMTGRYAYRIGMQDSVVHSTEPRGVPLSETFIGEKLQAAGYRTAAVGKWHLGMHMPQFLPRQRGFDEFYGILTGGGGHYTHKSVSEDFSPRNSVEGMEGKTRTFSGPNIIDGD-ELSEDSLD--NGMHSTELYNKKAGEYVDDIAGRDEPWFLYLSYQ 816
            RP++++ V+DDLGW DVG+    D   +TP LDA+  EGV     Y AA CTPSRA L+TGR+A  +G+QDSV+H TEPRG+ L+   + +KL A GY T+AVGKWHLG H P++LPR+RGFD F+GILTGGG H+ H S +E FS R ++      T   +G N+ + D  L  D+    +G+H+T LY ++A + VD      +P FLYL+YQ
Sbjct:    5 RPHIVLAVVDDLGWSDVGYQGSGDLGGATPQLDALAAEGVAFEALYGAAECTPSRAMLLTGRHAVALGLQDSVIHGTEPRGLDLTVATLADKLGARGYGTSAVGKWHLGFHTPKYLPRRRGFDSFFGILTGGGDHFAH-STTESFSVRGNL--TSSTTHGATGRNLWEDDGPLGADAFAGYDGVHTTALYAERALKIVDAKFSSKDPHFLYLAYQ 216          
BLAST of mRNA_H-elongata_contig132105.2303.1 vs. uniprot
Match: A0A7S3JYB2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYB2_9STRA)

HSP 1 Score: 191 bits (485), Expect = 4.290e-52
Identity = 97/214 (45.33%), Postives = 135/214 (63.08%), Query Frame = 1
Query:  193 PNVLVVVIDDLGWKDVGFHDP---AFSTPNLDAMVNEGVELSTFYTAATCTPSRAQLMTGRYAYRIGMQDSVVHSTEPRGVPLSETFIGEKL-QAAGYRTAAVGKWHLGMHMPQFLPRQRGFDEFYGILTGGGGHYTHKSVSEDFSPRNSVEGMEGKTRT--FSGPNIIDGDELSEDSLDNGMHSTELYNKKAGEYVDDIAGRDEPWFLYLSYQ 816
            PN++++++DD+GW DVG++       STP +D + NEG++   FYT+ TCT SRA LMTG+Y   +G+QDSV+H +EPRGVPL+E F+ EKL + AGYRT  +GKWHLG     + P +RGF+EFYGILTGGG H+ H S         ++ G E K R    +G N+   D         G+H+T LY +K  EY++ +     P FL L+YQ
Sbjct:   19 PNIVMMIVDDMGWGDVGYNSEMPKTVSTPTIDTLANEGIKFPHFYTSPTCTASRAALMTGKYPMHLGLQDSVIHPSEPRGVPLNEKFLSEKLKERAGYRTVFIGKWHLGFAQKAYAPTRRGFEEFYGILTGGGDHFEHSSTETV-----AMRGPEYKQRATVMTGYNLWHNDVPVPLEEHQGVHTTTLYTRKTVEYINQMFPSGLPVFLVLAYQ 227          
BLAST of mRNA_H-elongata_contig132105.2303.1 vs. uniprot
Match: Q9NJU7_HELPO (Sulfatase 2 (Fragment) n=1 Tax=Helix pomatia TaxID=6536 RepID=Q9NJU7_HELPO)

HSP 1 Score: 176 bits (445), Expect = 9.400e-50
Identity = 86/223 (38.57%), Postives = 134/223 (60.09%), Query Frame = 1
Query:  190 RPNVLVVVIDDLGWKDVGFHDPAFSTPNLDAMVNEGVELSTFYTAATCTPSRAQLMTGRYAYRIGMQDSVVHSTEPRGVPLSETFIGEKLQAAGYRTAAVGKWHLGMHMPQFLPRQRGFDEFYGILTGGGGHYTH--------------KSVSEDFSPRNSVEGMEGKTRTFSGPNIIDGDELSEDSLDNGMHSTELYNKKAGEYVDDIAGRDEPWFLYLSYQ 816
            +PN+++VV DD G++D+G+H   F+TPNLD +  EGV+L  +Y    C+P+R+QLMTGRY    G+Q  ++  ++P G+PL    I + L++ GY T A+GKWHLG++  ++ P  RGFD +YG L GG  +YT+               S+ E +SP+N + G       + G ++ D +E   D   NG +ST LY KKA + ++  +   +P+ LYL+YQ
Sbjct:   27 QPNIVIVVADDYGYRDIGYHGAEFATPNLDKLAAEGVKLENYYVQPICSPTRSQLMTGRYQIHTGLQHDIIWPSQPYGLPLQFPTIADMLKSVGYSTHAIGKWHLGLYKKEYTPLYRGFDSYYGYLEGGEDYYTYYNCDTFHNRTTPADTSILESYSPKNILLGKHEDENKWCGYDLRDMNEPVTDM--NGTYSTHLYTKKAIDIINGASTGGKPFLLYLAYQ 247          
BLAST of mRNA_H-elongata_contig132105.2303.1 vs. uniprot
Match: F0YAS5_AURAN (Uncharacterized protein ARS2 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAS5_AURAN)

HSP 1 Score: 184 bits (467), Expect = 1.010e-49
Identity = 88/141 (62.41%), Postives = 100/141 (70.92%), Query Frame = 1
Query:  190 RPNVLVVVIDDLGWKDVGFHDPAFSTPNLDAMVNEGVELSTFYTAATCTPSRAQLMTGRYAYRIGMQDSVVHSTEPRGVPLSETFIGEKLQAAGYRTAAVGKWHLGMHMPQFLPRQRGFDEFYGILTGGGGHYTHKSVSED 612
            RPN+L+ V+DD G  DV ++D A  TP L  M   G  L  FY A TCTPSRA LMTGRY  R GMQDSV+HSTEPRGVPL E F+ +KL  AGYRTAA+GKWHLGMH   + P +RGFD FYGILTGGG H  H S  +D
Sbjct:   43 RPNMLLTVVDDWGSGDVSYNDAALHTPELQRMSEHGFVLDNFYAAPTCTPSRAMLMTGRYNIRNGMQDSVIHSTEPRGVPLDERFLSQKLSDAGYRTAAIGKWHLGMHRDAYTPLKRGFDLFYGILTGGGSHTGHFSKGDD 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132105.2303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG13_9PHAE1.040e-11167.19Sulfatase domain-containing protein n=2 Tax=Ectoca... [more]
A0A835ZF60_9STRA3.470e-8059.81Formylglycine-dependent sulfatase n=1 Tax=Tribonem... [more]
A0A7S2BCJ8_9STRA1.420e-6553.55Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2S7R6_9STRA1.240e-6451.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2SGH0_9STRA6.600e-6250.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2FKR7_9STRA3.330e-6047.22Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0Y044_AURAN3.670e-6048.84Sulfatase domain-containing protein (Fragment) n=2... [more]
A0A7S3JYB2_9STRA4.290e-5245.33Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
Q9NJU7_HELPO9.400e-5038.57Sulfatase 2 (Fragment) n=1 Tax=Helix pomatia TaxID... [more]
F0YAS5_AURAN1.010e-4962.41Uncharacterized protein ARS2 n=1 Tax=Aureococcus a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132105contigH-elongata_contig132105:790..1770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.2
Seed ortholog evalue1.2e-94
Seed eggNOG ortholog2880.D7FKH5
KEGG koko:K12375
EggNOG free text desc.sulfuric ester hydrolase activity
EggNOG OGsCOG3119@1,KOG3867@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorysignal peptide
Exons1
Model size981
Cds size930
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.276874-UTR-H-elongata_contig132105:789..8401622929784.276874-UTR-H-elongata_contig132105:789..840Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132105 790..840 +
1691679156.2685723-UTR-H-elongata_contig132105:789..8401691679156.2685723-UTR-H-elongata_contig132105:789..840Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132105 790..840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.289729-CDS-H-elongata_contig132105:840..17701622929784.289729-CDS-H-elongata_contig132105:840..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132105 841..1770 +
1691679156.2787156-CDS-H-elongata_contig132105:840..17701691679156.2787156-CDS-H-elongata_contig132105:840..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132105 841..1770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132105.2303.1prot_H-elongata_contig132105.2303.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132105 841..1770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132105.2303.1

>prot_H-elongata_contig132105.2303.1 ID=prot_H-elongata_contig132105.2303.1|Name=mRNA_H-elongata_contig132105.2303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=310bp
MSPLPWKFVCSLLVSVLLCGYTSATVEVDFPAVQEVRPLYNDGSTVRPNV
LVVVIDDLGWKDVGFHDPAFSTPNLDAMVNEGVELSTFYTAATCTPSRAQ
LMTGRYAYRIGMQDSVVHSTEPRGVPLSETFIGEKLQAAGYRTAAVGKWH
LGMHMPQFLPRQRGFDEFYGILTGGGGHYTHKSVSEDFSPRNSVEGMEGK
TRTFSGPNIIDGDELSEDSLDNGMHSTELYNKKAGEYVDDIAGRDEPWFL
YLSYQVTALYTRYLPLFILQTVPTINVLTRRIMLLLVTHLAEDKPDLVAF
CSWSAEQGK*
back to top

mRNA from alignment at H-elongata_contig132105:790..1770+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132105.2303.1 ID=mRNA_H-elongata_contig132105.2303.1|Name=mRNA_H-elongata_contig132105.2303.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=981bp|location=Sequence derived from alignment at H-elongata_contig132105:790..1770+ (Himanthalia elongata Himel1 dioecious)
CTTTAAACGCACCAACAGAACAACCGTGGTTTGACTCAGCGGGGTAGATC GATGTCTCCACTGCCTTGGAAGTTTGTATGTTCATTACTTGTGAGTGTCC TATTGTGCGGATATACCTCGGCGACGGTGGAGGTAGATTTCCCTGCTGTT CAAGAGGTTAGGCCACTTTACAACGATGGCTCAACGGTGCGACCCAATGT TCTCGTGGTTGTAATAGATGACTTAGGTTGGAAGGATGTGGGCTTTCACG ATCCTGCCTTTTCAACTCCTAACCTCGACGCCATGGTCAATGAGGGGGTT GAATTGTCGACGTTCTACACGGCGGCGACGTGCACGCCGTCCCGAGCACA GCTTATGACGGGACGATACGCCTATCGCATCGGGATGCAGGACTCTGTGG TGCACTCCACCGAGCCACGCGGTGTTCCACTCAGCGAGACTTTCATCGGA GAGAAGCTGCAGGCGGCGGGCTACCGGACAGCCGCCGTTGGGAAGTGGCA TCTCGGCATGCATATGCCTCAGTTCTTGCCCAGACAGCGTGGCTTCGATG AATTCTACGGGATACTCACAGGAGGGGGCGGTCACTACACGCACAAGTCT GTTAGTGAGGATTTCTCCCCAAGGAACTCGGTCGAGGGAATGGAGGGGAA AACACGGACTTTCAGCGGCCCCAACATCATTGACGGAGACGAACTATCAG AAGACAGCCTAGACAACGGGATGCACAGCACGGAATTGTACAACAAAAAA GCTGGGGAGTACGTAGATGACATTGCGGGGAGGGACGAGCCCTGGTTCCT GTATCTGTCTTACCAGGTGACTGCTCTATACACAAGATACCTGCCATTAT TTATACTACAAACAGTACCTACTATTAATGTCCTCACAAGACGAATAATG TTGTTGTTGGTCACACATTTAGCAGAAGATAAACCGGATTTGGTTGCCTT CTGCTCCTGGTCAGCTGAACAGGGAAAATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig132105:790..1770+

>mRNA_H-elongata_contig132105.2303.1 ID=mRNA_H-elongata_contig132105.2303.1|Name=mRNA_H-elongata_contig132105.2303.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1860bp|location=Sequence derived from alignment at H-elongata_contig132105:790..1770+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCCACTGCCTTGGAAGTTTGTATGTTCATTACTTGTGAGTGTCCT
ATTGTGCGGATATACCTCGGCGACGGTGGAGGTAGATTTCCCTGCTGTTC
AAGAGGTTAGGCCACTTTACAACGATGGCTCAACGGTGCGACCCAATGTT
CTCGTGGTTGTAATAGATGACTTAGGTTGGAAGGATGTGGGCTTTCACGA
TCCTGCCTTTTCAACTCCTAACCTCGACGCCATGGTCAATGAGGGGGTTG
AATTGTCGACGTTCTACACGGCGGCGACGTGCACGCCGTCCCGAGCACAG
CTTATGACGGGACGATACGCCTATCGCATCGGGATGCAGGACTCTGTGGT
GCACTCCACCGAGCCACGCGGTGTTCCACTCAGCGAGACTTTCATCGGAG
AGAAGCTGCAGGCGGCGGGCTACCGGACAGCCGCCGTTGGGAAGTGGCAT
CTCGGCATGCATATGCCTCAGTTCTTGCCCAGACAGCGTGGCTTCGATGA
ATTCTACGGGATACTCACAGGAGGGGGCGGTCACTACACGCACAAGTCTG
TTAGTGAGGATTTCTCCCCAAGGAACTCGGTCGAGGGAATGGAGGGGAAA
ACACGGACTTTCAGCGGCCCCAACATCATTGACGGAGACGAACTATCAGA
AGACAGCCTAGACAACGGGATGCACAGCACGGAATTGTACAACAAAAAAG
CTGGGGAGTACGTAGATGACATTGCGGGGAGGGACGAGCCCTGGTTCCTG
TATCTGTCTTACCAGGTGACTGCTCTATACACAAGATACCTGCCATTATT
TATACTACAAACAGTACCTACTATTAATGTCCTCACAAGACGAATAATGT
TGTTGTTGGTCACACATTTAGCAGAAGATAAACCGGATTTGGTTGCCTTC
TGCTCCTGGTCAGCTGAACAGGGAAAATAAATGTCTCCACTGCCTTGGAA
GTTTGTATGTTCATTACTTGTGAGTGTCCTATTGTGCGGATATACCTCGG
CGACGGTGGAGGTAGATTTCCCTGCTGTTCAAGAGGTTAGGCCACTTTAC
AACGATGGCTCAACGGTGCGACCCAATGTTCTCGTGGTTGTAATAGATGA
CTTAGGTTGGAAGGATGTGGGCTTTCACGATCCTGCCTTTTCAACTCCTA
ACCTCGACGCCATGGTCAATGAGGGGGTTGAATTGTCGACGTTCTACACG
GCGGCGACGTGCACGCCGTCCCGAGCACAGCTTATGACGGGACGATACGC
CTATCGCATCGGGATGCAGGACTCTGTGGTGCACTCCACCGAGCCACGCG
GTGTTCCACTCAGCGAGACTTTCATCGGAGAGAAGCTGCAGGCGGCGGGC
TACCGGACAGCCGCCGTTGGGAAGTGGCATCTCGGCATGCATATGCCTCA
GTTCTTGCCCAGACAGCGTGGCTTCGATGAATTCTACGGGATACTCACAG
GAGGGGGCGGTCACTACACGCACAAGTCTGTTAGTGAGGATTTCTCCCCA
AGGAACTCGGTCGAGGGAATGGAGGGGAAAACACGGACTTTCAGCGGCCC
CAACATCATTGACGGAGACGAACTATCAGAAGACAGCCTAGACAACGGGA
TGCACAGCACGGAATTGTACAACAAAAAAGCTGGGGAGTACGTAGATGAC
ATTGCGGGGAGGGACGAGCCCTGGTTCCTGTATCTGTCTTACCAGGTGAC
TGCTCTATACACAAGATACCTGCCATTATTTATACTACAAACAGTACCTA
CTATTAATGTCCTCACAAGACGAATAATGTTGTTGTTGGTCACACATTTA
GCAGAAGATAAACCGGATTTGGTTGCCTTCTGCTCCTGGTCAGCTGAACA
GGGAAAATAA
back to top