prot_H-elongata_contig132019.2300.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig132019.2300.1
Unique Nameprot_H-elongata_contig132019.2300.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length103
Homology
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BLAST of mRNA_H-elongata_contig132019.2300.1 vs. uniprot
Match: D8LLY4_ECTSI (MSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY4_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.760e-28
Identity = 63/105 (60.00%), Postives = 81/105 (77.14%), Query Frame = 0 
Query:    1 VWEDAKARVQQKKLIVGFSLPQAGTGSAAATVANLKQASNGIKEAVSG--GRSRFGARGEVGVRGEGSGTDGSDLSQDQMWAQVTALRQKYDDLVSFTINLTAEK 103
            +W++AKARVQQKKL+V F+ P+     ++A    LKQASNG+++A++G   RSRF    E G++G G+G DGSD+SQDQMWAQ   LR+KYDDLVSFTINLTAEK
Sbjct:  121 LWKEAKARVQQKKLVVHFTFPRPSIPPSSAET--LKQASNGVRDAIAGDSSRSRFATGTEDGLQG-GAGGDGSDMSQDQMWAQAAELRRKYDDLVSFTINLTAEK 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132019.2300.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLY4_ECTSI2.760e-2860.00MSP domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132019contigH-elongata_contig132019:319..1630 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132019.2300.1mRNA_H-elongata_contig132019.2300.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig132019 319..1630 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig132019.2300.1 ID=prot_H-elongata_contig132019.2300.1|Name=mRNA_H-elongata_contig132019.2300.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
VWEDAKARVQQKKLIVGFSLPQAGTGSAAATVANLKQASNGIKEAVSGGR
SRFGARGEVGVRGEGSGTDGSDLSQDQMWAQVTALRQKYDDLVSFTINLT
AEK
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