mRNA_H-elongata_contig100205.23.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100205.23.1
Unique NamemRNA_H-elongata_contig100205.23.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100205.23.1 vs. uniprot
Match: D7FNG4_ECTSI (5-oxoprolinase (ATP-hydrolysing) 5-oxoprolinase (ATP-hydrolysing) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNG4_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 3.010e-57
Identity = 97/106 (91.51%), Postives = 98/106 (92.45%), Query Frame = 1 
Query:    1 QGVLAPVEIFIPAGSLLNPSDAAAVVGGNVLTSQRVTDVILKCFRACAASQGCMNNLTFGDEAMGYYETIAGGAGAGPTWVGCSGVHTHMTNTRITDPEILERRCP 318
            +G LAPVEI IP G LLNPS  AAVVGGNVLTSQRVTDVILKCFRACAASQGCMNNLTFGDEAMGYYETIAGGAGAGPTW GCSGVHTHMTNTRITDPEILERR P
Sbjct: 1055 RGCLAPVEIRIPEGCLLNPSPTAAVVGGNVLTSQRVTDVILKCFRACAASQGCMNNLTFGDEAMGYYETIAGGAGAGPTWSGCSGVHTHMTNTRITDPEILERRYP 1160
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BLAST of mRNA_H-elongata_contig100205.23.1 vs. uniprot
Match: A0A7S0AIF9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AIF9_9STRA)

HSP 1 Score: 179 bits (453), Expect = 4.380e-54
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 QGVLAPVEIFIPAGSLLNPSDAAAVVGGNVLTSQRVTDVILKCFRACAASQGCMNNLTFGDEAMGYYETIAGGAGAGPTWVGCSGVHTHMTNTRITDPEILERRCP 318
            QG LAPV+  IP  SLLNPSD A VVGGNVLTSQRV DV+L+ F+ACAASQGCMNNLTFGD+  GYYETIAGGAGAGPTW G SGVHTH TNTRITDPEILERR P
Sbjct:   79 QGCLAPVKFVIPPNSLLNPSDDAGVVGGNVLTSQRVVDVVLRAFKACAASQGCMNNLTFGDDRFGYYETIAGGAGAGPTWEGRSGVHTHCTNTRITDPEILERRYP 184
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BLAST of mRNA_H-elongata_contig100205.23.1 vs. uniprot
Match: A0A4Y2RKP5_ARAVE (5-oxoprolinase n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2RKP5_ARAVE)

HSP 1 Score: 178 bits (452), Expect = 7.540e-54
Identity = 85/106 (80.19%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:    1 QGVLAPVEIFIPAGSLLNPSDAAAVVGGNVLTSQRVTDVILKCFRACAASQGCMNNLTFGDEAMGYYETIAGGAGAGPTWVGCSGVHTHMTNTRITDPEILERRCP 318
            QG LAPV++ IP GS+L PSD AAVVGGNVLTSQRV DVI K F+ CAASQGCMNN+TFGDE +GYYET+AGGAGAGP W G SGVHTHMTNTRITDPEILERR P
Sbjct:   85 QGCLAPVQVSIPPGSILFPSDTAAVVGGNVLTSQRVVDVIFKAFKTCAASQGCMNNITFGDERIGYYETVAGGAGAGPHWHGRSGVHTHMTNTRITDPEILERRYP 190
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BLAST of mRNA_H-elongata_contig100205.23.1 vs. uniprot
Match: A0A7S4ETD8_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ETD8_CHRCT)

HSP 1 Score: 176 bits (445), Expect = 3.110e-53
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 QGVLAPVEIFIPAGSLLNPSDAAAVVGGNVLTSQRVTDVILKCFRACAASQGCMNNLTFGDEAMGYYETIAGGAGAGPTWVGCSGVHTHMTNTRITDPEILERRCP 318
            QG LAPV + IP  SLL+PS  AAVVGGNVLTSQRV DV+L+ F ACAASQGCMNNL+FGDE  GYYETIAGGAGAGPTW G SGVHTHMTNTRITDPEILERR P
Sbjct:   46 QGCLAPVTVKIPHNSLLHPSATAAVVGGNVLTSQRVVDVVLRAFGACAASQGCMNNLSFGDETFGYYETIAGGAGAGPTWHGRSGVHTHMTNTRITDPEILERRYP 151
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BLAST of mRNA_H-elongata_contig100205.23.1 vs. uniprot
Match: A0A7Z9HG69_9PROT (5-oxoprolinase n=1 Tax=Candidatus Lambdaproteobacteria bacterium TaxID=2035771 RepID=A0A7Z9HG69_9PROT)

HSP 1 Score: 173 bits (439), Expect = 6.060e-53
Identity = 84/106 (79.25%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    1 QGVLAPVEIFIPAGSLLNPSDAAAVVGGNVLTSQRVTDVILKCFRACAASQGCMNNLTFGDEAMGYYETIAGGAGAGPTWVGCSGVHTHMTNTRITDPEILERRCP 318
            QG L P+++ I  GSLL PS+ AAVVGGNVLTSQR+TDVILK FRACAASQGCMNN TFG+E  GYYETI GGAGAGP W G SGVHTHMTNTRITDPEILERR P
Sbjct:    1 QGCLNPIQVIIEDGSLLAPSENAAVVGGNVLTSQRITDVILKAFRACAASQGCMNNFTFGNENFGYYETIGGGAGAGPEWHGQSGVHTHMTNTRITDPEILERRYP 106
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BLAST of mRNA_H-elongata_contig100205.23.1 vs. uniprot
Match: UPI0015AEE255 (5-oxoprolinase-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015AEE255)

HSP 1 Score: 177 bits (448), Expect = 8.180e-53
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 QGVLAPVEIFIPAGSLLNPSDAAAVVGGNVLTSQRVTDVILKCFRACAASQGCMNNLTFGDEAMGYYETIAGGAGAGPTWVGCSGVHTHMTNTRITDPEILERRCP 318
            QG LAPV++ IP G +L PSD AAVVGGNVLTSQRV DVI K F+ CAASQGCMNN+TFGDE +GYYET+AGGAGAGP W G SGVHTHMTNTRITDPEILERR P
Sbjct:  120 QGCLAPVKVLIPKGCILCPSDTAAVVGGNVLTSQRVVDVIFKAFQTCAASQGCMNNITFGDETVGYYETVAGGAGAGPHWHGRSGVHTHMTNTRITDPEILERRYP 225
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BLAST of mRNA_H-elongata_contig100205.23.1 vs. uniprot
Match: A0A482VXP8_9CUCU (Hydantoinase B domain containing protein (Fragment) n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VXP8_9CUCU)

HSP 1 Score: 172 bits (436), Expect = 2.070e-52
Identity = 81/105 (77.14%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    4 GVLAPVEIFIPAGSLLNPSDAAAVVGGNVLTSQRVTDVILKCFRACAASQGCMNNLTFGDEAMGYYETIAGGAGAGPTWVGCSGVHTHMTNTRITDPEILERRCP 318
            G LAPV+I +P GS+L+PSD+AAVVGGNVLTSQRV DV+LK FR CAASQGCMNN+TFG  + G YET+AGG+GAGP W GCSGVHTHMTNTRITD EILERR P
Sbjct:    1 GCLAPVQIHVPKGSILDPSDSAAVVGGNVLTSQRVVDVVLKAFRVCAASQGCMNNITFGSGSWGCYETVAGGSGAGPGWHGCSGVHTHMTNTRITDVEILERRYP 105
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BLAST of mRNA_H-elongata_contig100205.23.1 vs. uniprot
Match: A0A7S2EER3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EER3_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.590e-52
Identity = 84/106 (79.25%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 QGVLAPVEIFIPAGSLLNPSDAAAVVGGNVLTSQRVTDVILKCFRACAASQGCMNNLTFGDEAMGYYETIAGGAGAGPTWVGCSGVHTHMTNTRITDPEILERRCP 318
            +G LAP+E  IP   LLNPSD A VVGGNVLTSQRV DV+LK F+ACAASQGCMNNLTFGD+  GYYETIAGGAGAGP W G SGVHTH TNTRITDPEILERR P
Sbjct:   48 EGCLAPIEFKIPKYCLLNPSDDAGVVGGNVLTSQRVVDVVLKAFKACAASQGCMNNLTFGDKKFGYYETIAGGAGAGPNWHGRSGVHTHCTNTRITDPEILERRYP 153
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BLAST of mRNA_H-elongata_contig100205.23.1 vs. uniprot
Match: UPI0003F0CF60 (5-oxoprolinase-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0CF60)

HSP 1 Score: 173 bits (438), Expect = 3.170e-52
Identity = 81/106 (76.42%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    1 QGVLAPVEIFIPAGSLLNPSDAAAVVGGNVLTSQRVTDVILKCFRACAASQGCMNNLTFGDEAMGYYETIAGGAGAGPTWVGCSGVHTHMTNTRITDPEILERRCP 318
            QG L PV+  IP G LLNP D AAVVGGNVLTSQR+ DV+LK F  CAASQGCMNN+TFGD+ +GYYET++GG+GAGPTW G SGVHTHMTNTRITDPEILERR P
Sbjct:   10 QGCLNPVKAIIPEGCLLNPCDKAAVVGGNVLTSQRIVDVVLKAFSVCAASQGCMNNVTFGDQNVGYYETVSGGSGAGPTWNGRSGVHTHMTNTRITDPEILERRYP 115
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BLAST of mRNA_H-elongata_contig100205.23.1 vs. uniprot
Match: A0A183J5A7_9BILA (Hydantoinase_B domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183J5A7_9BILA)

HSP 1 Score: 173 bits (439), Expect = 6.360e-52
Identity = 80/106 (75.47%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    1 QGVLAPVEIFIPAGSLLNPSDAAAVVGGNVLTSQRVTDVILKCFRACAASQGCMNNLTFGDEAMGYYETIAGGAGAGPTWVGCSGVHTHMTNTRITDPEILERRCP 318
            QG L P+ I +P GSLLNPS  AAVVGGNVLTSQR+ DVILKCF+ CAASQGCMNN++FGD + GYYETIAGG+GAGP + GC G+ THMTNTRITDPEILERR P
Sbjct:  156 QGCLKPIRITVPEGSLLNPSSNAAVVGGNVLTSQRIVDVILKCFKVCAASQGCMNNVSFGDTSFGYYETIAGGSGAGPNFPGCDGIQTHMTNTRITDPEILERRYP 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100205.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNG4_ECTSI3.010e-5791.515-oxoprolinase (ATP-hydrolysing) 5-oxoprolinase (A... [more]
A0A7S0AIF9_9STRA4.380e-5481.13Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A4Y2RKP5_ARAVE7.540e-5480.195-oxoprolinase n=1 Tax=Araneus ventricosus TaxID=1... [more]
A0A7S4ETD8_CHRCT3.110e-5381.13Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7Z9HG69_9PROT6.060e-5379.255-oxoprolinase n=1 Tax=Candidatus Lambdaproteobact... [more]
UPI0015AEE2558.180e-5379.255-oxoprolinase-like n=1 Tax=Stegodyphus dumicola T... [more]
A0A482VXP8_9CUCU2.070e-5277.14Hydantoinase B domain containing protein (Fragment... [more]
A0A7S2EER3_9STRA2.590e-5279.25Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
UPI0003F0CF603.170e-5276.425-oxoprolinase-like n=1 Tax=Saccoglossus kowalevsk... [more]
A0A183J5A7_9BILA6.360e-5275.47Hydantoinase_B domain-containing protein n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100205contigH-elongata_contig100205:60..760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.7
Seed ortholog evalue1.3e-48
Seed eggNOG ortholog2880.D7FNG4
KEGG rclassRC00553
KEGG koko:K01469
KEGG ReactionR00251
KEGG Pathwayko00480,map00480
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0017168,GO:0034641,GO:0042221,GO:0043603,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0051716,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:1901564,GO:1990748
EggNOG free text desc.5-oxoprolinase (ATP-hydrolyzing) activity
EggNOG OGsCOG0145@1,KOG1939@2759
EC3.5.2.9
COG Functional cat.EQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929544.5299523-CDS-H-elongata_contig100205:59..1831622929544.5299523-CDS-H-elongata_contig100205:59..183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100205 60..183 -
1691679062.618017-CDS-H-elongata_contig100205:59..1831691679062.618017-CDS-H-elongata_contig100205:59..183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100205 60..183 -
1622929544.546513-CDS-H-elongata_contig100205:566..7601622929544.546513-CDS-H-elongata_contig100205:566..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100205 567..760 -
1691679062.6321077-CDS-H-elongata_contig100205:566..7601691679062.6321077-CDS-H-elongata_contig100205:566..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100205 567..760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100205.23.1prot_H-elongata_contig100205.23.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100205 60..760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100205.23.1

>prot_H-elongata_contig100205.23.1 ID=prot_H-elongata_contig100205.23.1|Name=mRNA_H-elongata_contig100205.23.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
QGVLAPVEIFIPAGSLLNPSDAAAVVGGNVLTSQRVTDVILKCFRACAAS
QGCMNNLTFGDEAMGYYETIAGGAGAGPTWVGCSGVHTHMTNTRITDPEI
LERRCP
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mRNA from alignment at H-elongata_contig100205:60..760-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100205.23.1 ID=mRNA_H-elongata_contig100205.23.1|Name=mRNA_H-elongata_contig100205.23.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=701bp|location=Sequence derived from alignment at H-elongata_contig100205:60..760- (Himanthalia elongata Himel1 dioecious)
CAGGGAGTCCTGGCGCCGGTAGAGATCTTCATCCCCGCGGGATCGCTGCT
GAATCCTTCCGACGCGGCGGCGGTCGTGGGCGGCAACGTGCTCACCTCGC
AGCGCGTGACGGACGTGATCCTCAAGTGTTTCCGGGCGTGCGCGGCGAGC
CAGGGGTGCATGAACAACCTCACCTTCGGCGACGAGGCCATGGGGTGAGC
GCGCGTCGGTCTCAGGCTCTCTTAGGGTGCGATGAAGCAATGATGACCGG
CTCAATCGTGGTGGTAAGTCACGATGTGGTGATTGCTTCGCGGTTTTGGT
TGTCTCGACGTGAGTGAAAAAATGAAAGGCGCGCCGTGACCATCATCGTC
ACCGTCTCGACGATGAAGAGCGCCACGCGATGCGAAGAAGCGTCTTGCAC
TCCCAGGAAAGCAGATATCGAAGCATGATGTAGGTATGCGTGAGCATGTG
CGTGTGTCATAAACCTCCCTCCCAGGCGACATTTGTGGTTTTGGTCTGGG
ATCCATACATCGCTCCTCCTCCTCATACAGAGGCATTTATTGTTGCTGTT
GGGTTTTTTTTTCTGTTACGTCGGCAGGTACTACGAGACTATCGCGGGTG
GGGCGGGCGCCGGTCCCACGTGGGTGGGCTGCAGCGGGGTGCACACCCAC
ATGACCAACACGCGCATCACTGACCCGGAGATTCTAGAGCGCAGGTGTCC
C
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Coding sequence (CDS) from alignment at H-elongata_contig100205:60..760-

>mRNA_H-elongata_contig100205.23.1 ID=mRNA_H-elongata_contig100205.23.1|Name=mRNA_H-elongata_contig100205.23.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig100205:60..760- (Himanthalia elongata Himel1 dioecious)
CAGGGAGTCCTGGCGCCGGTAGAGATCTTCATCCCCGCGGGATCGCTGCT
GAATCCTTCCGACGCGGCGGCGGTCGTGGGCGGCAACGTGCTCACCTCGC
AGCGCGTGACGGACGTGATCCTCAAGTGTTTCCGGGCGTGCGCGGCGAGC
CAGGGGTGCATGAACAACCTCACCTTCGGCGACGAGGCCATGGGCAGGGA
GTCCTGGCGCCGGTAGAGATCTTCATCCCCGCGGGATCGCTGCTGAATCC
TTCCGACGCGGCGGCGGTCGTGGGCGGCAACGTGCTCACCTCGCAGCGCG
TGACGGACGTGATCCTCAAGTGTTTCCGGGCGTGCGCGGCGAGCCAGGGG
TGCATGAACAACCTCACCTTCGGCGACGAGGCCATGGGGTACTACGAGAC
TATCGCGGGTGGGGCGGGCGCCGGTCCCACGTGGGTGGGCTGCAGCGGGG
TGCACACCCACATGACCAACACGCGCATCACTGACCCGGAGATTCTAGAG
CGCAGGTGTCCCGTACTACGAGACTATCGCGGGTGGGGCGGGCGCCGGTC
CCACGTGGGTGGGCTGCAGCGGGGTGCACACCCACATGACCAACACGCGC
ATCACTGACCCGGAGATTCTAGAGCGCAGGTGTCCC
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