prot_H-elongata_contig131971.2298.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig131971.2298.1
Unique Nameprot_H-elongata_contig131971.2298.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length87
Homology
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.240e-12
Identity = 31/81 (38.27%), Postives = 53/81 (65.43%), Query Frame = 0
Query:    4 PYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLD 84
            PYR  +G L++  T T+ DI   V  +++F ENPG  + +A I++++YL  T++  I Y G   GL +EA++++D+G Y+D
Sbjct: 1013 PYRSLIGCLLYITTCTRPDIAYIVTQLSRFLENPGLQHWRAAIRVLRYLKTTREHGILYNGGKNGLKVEAFSDADWGSYID 1093          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A0P6GQB1_9CRUS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6GQB1_9CRUS)

HSP 1 Score: 68.2 bits (165), Expect = 2.010e-11
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 0
Query:    3 FPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDF 79
            +PYREAVGAL++ A MT+ DI  AV  V+K+C+NP  ++  AV +I  YL  T D  I  GG+  GL    YT++DF
Sbjct: 1260 YPYREAVGALLYLALMTRPDISYAVGQVSKYCQNPNESHWNAVTQIFAYLNGTMDFGIWLGGERTGLI--GYTDADF 1334          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: UPI001E1BC78C (secreted RxLR effector protein 161-like n=2 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BC78C)

HSP 1 Score: 67.0 bits (162), Expect = 2.310e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0
Query:    3 FPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDF 79
            +PYREAVGAL++ A MT+ DI  AV  V+K+C+NP  ++  AV++I  YL  T D  I  GG   GL    +T++D+
Sbjct:   35 YPYREAVGALLYVALMTRPDICYAVGQVSKYCQNPDPSHWDAVVQIFAYLKGTADYGIWLGGNRSGLV--GFTDADY 109          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A6A3V7V5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V7V5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.960e-11
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 0
Query:    4 PYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLD 84
            PYR  VG+LM+ A  T+ DI  AV  +++F ENPG  +  A IK+++YLL TKD  I Y G   G  +EAY+N+D+    D
Sbjct:  208 PYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSNADWAGNRD 287          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A6A3Q978_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q978_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 5.010e-11
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 0
Query:    4 PYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLD 84
            PYR  VG+LM+ A  T+ DI  AV  +++F ENPG  +  A IK+++YLL TKD  I Y G   G  +EAY+N+D+    D
Sbjct:  602 PYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSNADWAGNRD 681          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A6A3PU23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PU23_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.070e-11
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 0
Query:    4 PYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLD 84
            PYR  VG+LM+ A  T+ DI  AV  +++F ENPG  +  A IK+++YLL TKD  I Y G   G  +EAY+++D+    D
Sbjct:   58 PYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRD 137          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A2P4Y945_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y945_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 6.650e-11
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 0
Query:    4 PYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDF 79
            PYR  VG+LM+ A  T+ DI  AV  ++++ ENPG  +  A IK+++YLL TKD AITY G+  G  + AY+++D+
Sbjct:  291 PYRSLVGSLMYLACETRPDIAVAVAKLSRYLENPGQRHWDAGIKVVRYLLKTKDVAITYDGR-MGTELTAYSDADW 365          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A225UK66_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UK66_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 8.970e-11
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 0
Query:    4 PYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLD 84
            PYR  +G+LM+ A  T+ DI   V  +++F ENPG A+  A IK+++YLL TKD  ITY G   G  + AY+++D+    D
Sbjct:  312 PYRSLIGSLMYLACETRPDIAIVVAKLSRFLENPGEAHWTAGIKVVRYLLKTKDVGITYNGL-LGTKLTAYSDADWAGNRD 391          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A6A3MW41_9STRA (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MW41_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 8.990e-11
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 0
Query:    4 PYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLD 84
            PYR  VG+LM+ A  T+ DI  AV  +++F ENPG  +  A IK+++YLL TKD  I Y G   G  +EAY+++D+    D
Sbjct:    5 PYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRD 84          
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Match: A0A6A3HNY6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3HNY6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 9.570e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 0
Query:    4 PYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQYLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLD 84
            PYR  VG+LM+ A  T+ DI  AV  +++F ENPG  +  A IK+++YLL TKD  I Y G   G  +E Y+++D+    D
Sbjct:    5 PYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEPYSDADWAGNRD 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131971.2298.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P4XNP3_9STRA2.240e-1238.27Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A0P6GQB1_9CRUS2.010e-1148.05Retrovirus-related Pol polyprotein from transposon... [more]
UPI001E1BC78C2.310e-1145.45secreted RxLR effector protein 161-like n=2 Tax=Da... [more]
A0A6A3V7V5_9STRA3.960e-1145.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3Q978_9STRA5.010e-1145.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3PU23_9STRA6.070e-1144.44Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A2P4Y945_9STRA6.650e-1146.05Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A225UK66_9STRA8.970e-1143.21Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A6A3MW41_9STRA8.990e-1144.44Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
A0A6A3HNY6_9STRA9.570e-1143.21Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..86
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131971contigH-elongata_contig131971:567..827 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131971.2298.1mRNA_H-elongata_contig131971.2298.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig131971 405..857 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig131971.2298.1 ID=prot_H-elongata_contig131971.2298.1|Name=mRNA_H-elongata_contig131971.2298.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MKFPYREAVGALMWTATMTQSDIVSAVRAVAKFCENPGAANKKAVIKIIQ
YLLHTKDRAITYGGQGCGLCMEAYTNSDFGVYLDTI*
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