mRNA_H-elongata_contig131957.2295.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131957.2295.1
Unique NamemRNA_H-elongata_contig131957.2295.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig131957.2295.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.960e-39
Identity = 82/158 (51.90%), Postives = 98/158 (62.03%), Query Frame = 1
Query:   76 PSAIEAREHPAYFKYFKMIKMGMPRGAALQKMVKDGVDEAILDAPDAMIPLSAEEQVE----------------------------------GQPKGMVAAKDHPHYVKYFKMLRMGMAQGAALQAMLRDGVDQAILDTPEALLPLPVDEVSGSAEAA 447
            PS + A+EHP +FK+FKM+ MGMP+GAALQ M K GVD+A+LD PDA++PLSAE+Q E                                  G PKGM  AKDHP Y  YFKML+MG+ +GAALQ M +DGVDQ+ILDTPEAL  LP  E  G A AA
Sbjct: 2159 PSEVAAKEHPEFFKFFKMLAMGMPKGAALQAMAKAGVDQAVLDTPDALLPLSAEQQAELAERRDAAAAAAMLSAEAENQRDGERGEGASPPAGPPKGMAPAKDHPDYQSYFKMLKMGIPRGAALQKMAKDGVDQSILDTPEALFSLP--ESGGEAAAA 2314          
BLAST of mRNA_H-elongata_contig131957.2295.1 vs. uniprot
Match: D8LT97_ECTSI (Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT97_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 2.420e-37
Identity = 78/135 (57.78%), Postives = 93/135 (68.89%), Query Frame = 1
Query:   70 TGPSAIEAREHPAYFKYFKMIKMGMPRGAALQKMVKDGVDEAILDAPDAMIPLSAEE---------QVEGQPKGMVAAKDHPHYVKYFKMLRMGMAQGAALQAMLRDGVDQAILDTPEALLPLPVDEVSGSAEAA 447
            T PS + A++HP Y KYFKM+KMG+PRGAALQKM  +G D+AILD PDAM+PL+  E                 MVAAKDHP Y KYFKML+MG+ +GAALQ M  +G DQAILDTP+A+LPL   E  G A AA
Sbjct: 1806 TAPSMVAAKDHPDYQKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDAMLPLAETEGGAAXXXXXXXXXTAPSMVAAKDHPDYQKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDAMLPLA--ETEGGAAAA 1938          
BLAST of mRNA_H-elongata_contig131957.2295.1 vs. uniprot
Match: A0A1V9ZW19_9STRA (Formin-homology 2 domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZW19_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.990e-25
Identity = 58/124 (46.77%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   79 SAIEAREHPAYFKYFKMIKMGMPRGAALQKMVKDGVDEAILDAPDAMIPLSAEEQVEGQPKGMVAAKDHPHYVKYFKMLRMGMAQGAALQAMLRDGVDQAILDTPEALLPLPVDEVSGSAEAAP 450
            +A++A EHP Y KYFK++KMGMP      K   +G+D AILD PDA+IPL A E  +G    MV  K+HP Y KYFK+++MGM        M  +GVD  +L TP+ L+PL  D+ S    A P
Sbjct:  185 AAVKAEEHPDYVKYFKLLKMGMPLEHVKLKASSEGIDTAILDTPDAIIPLPALEVPQGPV--MVPIKEHPDYAKYFKLMKMGMPAMQVELKMNAEGVDATVLSTPDKLVPLADDKSSNQQTAQP 306          
BLAST of mRNA_H-elongata_contig131957.2295.1 vs. uniprot
Match: A0A1V9Y9P9_9STRA (Formin-homology 2 domain-containing protein (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9P9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.620e-22
Identity = 51/110 (46.36%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   79 SAIEAREHPAYFKYFKMIKMGMPRGAALQKMVKDGVDEAILDAPDAMIPLSAEEQVEGQPKGMVAAKDHPHYVKYFKMLRMGMAQGAALQAMLRDGVDQAILDTPEALLP 408
            +   A +HP + KYFK++KMGMP      K   +GVD A+LD PD  +PL+  E        MVA KDHP Y KYFK+L+MGM        M  +GVD A+L TP+AL+P
Sbjct:  893 ATARAADHPTFAKYFKLLKMGMPLEHVKLKAASEGVDAAVLDTPDRELPLATAEASAPAGPPMVATKDHPKYAKYFKLLKMGMPSMQVELKMQAEGVDPAVLATPDALIP 1002          
BLAST of mRNA_H-elongata_contig131957.2295.1 vs. uniprot
Match: G5ACL8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5ACL8_PHYSP)

HSP 1 Score: 99.4 bits (246), Expect = 3.210e-21
Identity = 56/127 (44.09%), Postives = 75/127 (59.06%), Query Frame = 1
Query:   22 LTKDLKTL-SALQNKEETGPSAIEAREHPAYFKYFKMIKMGMPRGAALQKMVKDGVDEAILD----APDAMIPLSAEEQVEGQPKGMVAAKDHPHYVKYFKMLRMGMAQGAALQAMLRDGVDQAILD 387
            L  D+K + S   + E+   S +  ++H  Y KYFKM+KMG+P GA  QKM  D VDE  LD    AP + +P  AE++V   PK  +  KD P + KYFKML+MG+ +GA  Q M  DGVD   L+
Sbjct:  682 LQDDIKCVNSPTSSSEKDSHSEVLLKDHEVYAKYFKMLKMGLPEGAVRQKMKADEVDERALDLGGDAPFSKLPKPAEKEVSVDPKNDMKLKDDPKFAKYFKMLQMGLPEGAVRQKMKADGVDDRALE 808          
BLAST of mRNA_H-elongata_contig131957.2295.1 vs. uniprot
Match: D0N1G4_PHYIT (Formin-homology 2 domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=D0N1G4_PHYIT)

HSP 1 Score: 99.0 bits (245), Expect = 4.450e-21
Identity = 53/138 (38.41%), Postives = 81/138 (58.70%), Query Frame = 1
Query:   64 EETGPSAIEAREHPAYFKYFKMIKMGMPRGAALQKMVKDGVDEAILDAPDAMIPLSAEEQVEGQPKGMVAAKDHPHYVKYFKMLRMGMAQGAALQAMLRDGVDQAILDTPEALLPLPVDEVSGSAEAAPT-PLIPAPP 474
            E+  P  +  ++H  + KYFK+I+MGMP      K   +G+D  +LDAPD ++    +E   G  K +V A +HP YVKYFK+L+MGM +      M  + +D  +LDTP+ ++P   ++VSG+A  AP  P +  PP
Sbjct: 1185 EDVAPKGVPVKQHEKFAKYFKLIEMGMPLPHIKLKAASEGLDGDLLDAPDKLVDEDGKEIKAGSGKKVVMASEHPSYVKYFKLLKMGMPRPQLELKMSAESLDPKVLDTPDKMIP---EDVSGTAPKAPVKPAVTGPP 1319          
BLAST of mRNA_H-elongata_contig131957.2295.1 vs. uniprot
Match: A0A6A3U6I3_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U6I3_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.230e-20
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   64 EETGPSAIEAREHPAYFKYFKMIKMGMPRGAALQKMVKDGVDEAILD----APDAMIPLSAEEQVEGQPKGMVAAKDHPHYVKYFKMLRMGMAQGAALQAMLRDGVDQAILD 387
            +++  S +  ++H  Y KYFKM+ MG+P GA  QKM  DGVDE  LD    AP + +P  AE +    PK  +  KD P + KYFKML+MG+ +GA  Q M  DGVD   LD
Sbjct:  848 DKSAASEVLLKDHEVYAKYFKMLSMGLPEGAVRQKMKVDGVDERALDLGGDAPFSKLPKPAETENSVDPKNDMKLKDAPKFAKYFKMLQMGLLEGAVRQKMKVDGVDDRALD 959          
BLAST of mRNA_H-elongata_contig131957.2295.1 vs. uniprot
Match: A0A662XIZ2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XIZ2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 9.650e-20
Identity = 61/142 (42.96%), Postives = 81/142 (57.04%), Query Frame = 1
Query:   22 LTKDLKTLSALQN--KEETGPSAIEAREHPAYFKYFKMIKMGMPRGAALQKMVKDGVDEAILD-APDAMIPLSAEEQVEGQPKGMVAAKDHPHYVKYFKMLRMGMAQGAALQAMLRDGVDQAILDTPEALLPLPVDEVSGSA 438
            L  D+K+++  Q    ++  PS I  ++H  Y KYFKM+KMG+P GA  QKM  DGV E  LD   DA + + A+   E   K  +  KD P Y KYFKML+MG+ +GA  Q M  D VD+  LD     L   V E++GSA
Sbjct:  681 LQDDIKSVNLPQEGGSKDADPSDILLKDHEVYSKYFKMLKMGLPEGAVRQKMKADGVSEQALDLGGDAPVSMLAKPAAE---KSDIKLKDDPLYAKYFKMLKMGLPEGAVRQKMKADAVDERALDLGGDAL---VSELAGSA 816          
BLAST of mRNA_H-elongata_contig131957.2295.1 vs. uniprot
Match: A0A024TTB1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TTB1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.340e-19
Identity = 55/125 (44.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query:   76 PSA-IEAREHPAYFKYFKMIKMGMPRGAALQKMVKDGVDEAILDAPDAMIPLSAEEQVEGQPKGMVAAKDHPHYVKYFKMLRMGMAQGAALQAMLRDGVDQAILDTPEALLPLPVDEVSGSAEAA 447
            PSA + A    A  K+FK+ KMGMP      KM  +G D A++DAPD ++  + + +V   P  MVAAKDHP Y KYFK+++MGM        +  +G+D AILDTP+ALLP   +++S  A+A+
Sbjct: 1141 PSAGVRADACAALAKFFKLKKMGMPAAQIQLKMQSEGFDPALIDAPDTIV--NDDGKVPKAPSDMVAAKDHPTYAKYFKLMKMGMPMVQIQLKVSSEGLDPAILDTPDALLP---EDLSNQADAS 1260          
BLAST of mRNA_H-elongata_contig131957.2295.1 vs. uniprot
Match: A0A7S3HT31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT31_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.530e-19
Identity = 52/137 (37.96%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   37 KTLSALQNKEETGPSAIEAREHPAYFKYFKMIKMGMPRGAALQKMVKDGVDEAILDAP-DAMIPLSAEEQVEGQPKGMVAAKDHPHYVKYFKMLRMGMAQGAALQAMLRDGVDQAILDTPEALLPLPVDEVSGSAEA 444
            KT ++   +EET    +   EHP Y K+FKM+K+G+P+ A  QKM ++G+D +ILD P D  IPL+ ++         VA  +HP YVK+FKML++G+        M ++G+D A+LD   A + +P+++   +AE+
Sbjct:  119 KTDASADKEEET----VLVSEHPKYVKFFKMLKIGLPKDAVKQKMTQEGLDPSILDKPADEKIPLNDKKPDAASEGEKVAISEHPKYVKFFKMLKVGLPAQMVKSKMEQEGLDPAMLDKDPATM-IPLNDAPAAAES 250          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131957.2295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR06_9PHAE5.960e-3951.90FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LT97_ECTSI2.420e-3757.78Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A1V9ZW19_9STRA8.990e-2546.77Formin-homology 2 domain-containing protein (Fragm... [more]
A0A1V9Y9P9_9STRA3.620e-2246.36Formin-homology 2 domain-containing protein (Fragm... [more]
G5ACL8_PHYSP3.210e-2144.09Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
D0N1G4_PHYIT4.450e-2138.41Formin-homology 2 domain-containing protein n=7 Ta... [more]
A0A6A3U6I3_9STRA5.230e-2045.54Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A662XIZ2_9STRA9.650e-2042.96Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A024TTB1_9STRA1.340e-1944.00Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A7S3HT31_9STRA1.530e-1937.96Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131957contigH-elongata_contig131957:1135..1710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue6.8e-33
Seed eggNOG ortholog2880.D8LT97
KEGG koko:K04512,ko:K05745,ko:K10293,ko:K11238
KEGG Pathwayko04011,ko04310,ko04810,map04011,map04310,map04810
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005522,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008289,GO:0009987,GO:0010638,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030832,GO:0030833,GO:0030838,GO:0030865,GO:0030866,GO:0031254,GO:0031334,GO:0031344,GO:0031345,GO:0032153,GO:0032154,GO:0032155,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034622,GO:0035091,GO:0040011,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044877,GO:0045010,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051258,GO:0051493,GO:0051495,GO:0051674,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0098590,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1902903,GO:1902905,GO:1904170,GO:1904171
EggNOG free text desc.actin binding
EggNOG OGsKOG1922@1,KOG1922@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.4276752-CDS-H-elongata_contig131957:1134..13591622929783.4276752-CDS-H-elongata_contig131957:1134..1359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131957 1135..1359 -
1691679155.9294121-CDS-H-elongata_contig131957:1134..13591691679155.9294121-CDS-H-elongata_contig131957:1134..1359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131957 1135..1359 -
1622929783.4436252-CDS-H-elongata_contig131957:1461..17101622929783.4436252-CDS-H-elongata_contig131957:1461..1710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131957 1462..1710 -
1691679155.9397588-CDS-H-elongata_contig131957:1461..17101691679155.9397588-CDS-H-elongata_contig131957:1461..1710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131957 1462..1710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131957.2295.1prot_H-elongata_contig131957.2295.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131957 1135..1710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131957.2295.1

>prot_H-elongata_contig131957.2295.1 ID=prot_H-elongata_contig131957.2295.1|Name=mRNA_H-elongata_contig131957.2295.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
AAASAEALTKDLKTLSALQNKEETGPSAIEAREHPAYFKYFKMIKMGMPR
GAALQKMVKDGVDEAILDAPDAMIPLSAEEQVEGQPKGMVAAKDHPHYVK
YFKMLRMGMAQGAALQAMLRDGVDQAILDTPEALLPLPVDEVSGSAEAAP
TPLIPAPP
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mRNA from alignment at H-elongata_contig131957:1135..1710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131957.2295.1 ID=mRNA_H-elongata_contig131957.2295.1|Name=mRNA_H-elongata_contig131957.2295.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=576bp|location=Sequence derived from alignment at H-elongata_contig131957:1135..1710- (Himanthalia elongata Himel1 dioecious)
GCGGCAGCTTCGGCCGAGGCGTTGACAAAAGATTTAAAGACATTGTCAGC GTTGCAAAATAAGGAAGAGACGGGGCCTAGCGCCATCGAGGCTAGGGAGC ACCCGGCTTACTTCAAGTACTTTAAAATGATCAAGATGGGGATGCCAAGA GGCGCGGCATTGCAAAAGATGGTAAAAGATGGCGTGGACGAGGCAATACT TGACGCCCCTGACGCAATGATCCCCTTGTCGGCCGAAGAACAGGTGGAGG TGAAAGGACGCCGTCGGCAGAAATCGATGGCGGAAAGTGAAGATAAAGCA GGAGGCGCGGCAGCAGGCGGTGGGGGCGCGAACGAACTAACTGCTCCAAA GGGACAGCCGAAGGGCATGGTGGCCGCGAAGGACCACCCACATTACGTGA AGTATTTCAAGATGCTTAGAATGGGGATGGCGCAAGGGGCGGCGCTACAG GCAATGCTGAGGGATGGAGTGGATCAAGCGATTCTCGATACCCCTGAAGC TTTGCTGCCTCTACCCGTCGACGAGGTATCTGGGTCTGCAGAAGCAGCAC CGACTCCACTTATCCCAGCTCCGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig131957:1135..1710-

>mRNA_H-elongata_contig131957.2295.1 ID=mRNA_H-elongata_contig131957.2295.1|Name=mRNA_H-elongata_contig131957.2295.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig131957:1135..1710- (Himanthalia elongata Himel1 dioecious)
GCGGCAGCTTCGGCCGAGGCGTTGACAAAAGATTTAAAGACATTGTCAGC
GTTGCAAAATAAGGAAGAGACGGGGCCTAGCGCCATCGAGGCTAGGGAGC
ACCCGGCTTACTTCAAGTACTTTAAAATGATCAAGATGGGGATGCCAAGA
GGCGCGGCATTGCAAAAGATGGTAAAAGATGGCGTGGACGAGGCAATACT
TGACGCCCCTGACGCAATGATCCCCTTGTCGGCCGAAGAACAGGTGGAGG
CGGCAGCTTCGGCCGAGGCGTTGACAAAAGATTTAAAGACATTGTCAGCG
TTGCAAAATAAGGAAGAGACGGGGCCTAGCGCCATCGAGGCTAGGGAGCA
CCCGGCTTACTTCAAGTACTTTAAAATGATCAAGATGGGGATGCCAAGAG
GCGCGGCATTGCAAAAGATGGTAAAAGATGGCGTGGACGAGGCAATACTT
GACGCCCCTGACGCAATGATCCCCTTGTCGGCCGAAGAACAGGTGGAGGG
ACAGCCGAAGGGCATGGTGGCCGCGAAGGACCACCCACATTACGTGAAGT
ATTTCAAGATGCTTAGAATGGGGATGGCGCAAGGGGCGGCGCTACAGGCA
ATGCTGAGGGATGGAGTGGATCAAGCGATTCTCGATACCCCTGAAGCTTT
GCTGCCTCTACCCGTCGACGAGGTATCTGGGTCTGCAGAAGCAGCACCGA
CTCCACTTATCCCAGCTCCGCCGGGACAGCCGAAGGGCATGGTGGCCGCG
AAGGACCACCCACATTACGTGAAGTATTTCAAGATGCTTAGAATGGGGAT
GGCGCAAGGGGCGGCGCTACAGGCAATGCTGAGGGATGGAGTGGATCAAG
CGATTCTCGATACCCCTGAAGCTTTGCTGCCTCTACCCGTCGACGAGGTA
TCTGGGTCTGCAGAAGCAGCACCGACTCCACTTATCCCAGCTCCGCCG
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