mRNA_H-elongata_contig131866.2290.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131866.2290.1
Unique NamemRNA_H-elongata_contig131866.2290.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131866.2290.1 vs. uniprot
Match: D7FSY8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSY8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 6.320e-36
Identity = 68/114 (59.65%), Postives = 92/114 (80.70%), Query Frame = 1 
Query:    1 ISATLHPIYFLFVAPPAAASIAWKGISGNFDMLAKSLFFISGFLYMFIAFFNSNLLRNAPFSIAWWAYTFPSSTFAFAAVLYSEEVAIKAVAQAALVLALASTVIVLIVFAKTM 342
            +S  LHPIYFLF+APP+AA+IAW  I+G FD+L++SL+FI+GFLYMF    NS+ LR A FS+AWWAY+FPSSTFA A +LY+EE++ + V   ALV++L S+VIV++VF  T+
Sbjct:  414 LSRALHPIYFLFIAPPSAAAIAWTRINGEFDVLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFPSSTFAVATILYAEELSSEGVVLFALVVSLGSSVIVMVVFVCTL 527
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BLAST of mRNA_H-elongata_contig131866.2290.1 vs. uniprot
Match: D7G1R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R0_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.140e-24
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 ISATLHPIYFLFVAPPAAASIAWKGISGNFDMLAKSLFFISGFLYMFIAFFNSNLLRNAPFSIAWWAYTFPSS 219
            +S  LHPIYFLF+APP+AA+IAW  I+G FD L++SL+FI+GFLYMF    NS+ LR A FS+AWWAY+FPS+
Sbjct:  363 LSRALHPIYFLFIAPPSAAAIAWTRITGEFDDLSRSLYFIAGFLYMFFVLGNSSFLRTASFSVAWWAYSFPSA 435
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BLAST of mRNA_H-elongata_contig131866.2290.1 vs. uniprot
Match: A0A2I0AY22_9ASPA (Guard cell S-type anion channel SLAC1 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AY22_9ASPA)

HSP 1 Score: 94.7 bits (234), Expect = 2.390e-20
Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:   13 LHPIYFLFVAPPAAASIAWKGISGNFDMLAKSLFFISGFLYMFIAFFNSNLLRNAPFSIAWWAYTFPSSTFAFAAVLYSEEVAIKAVAQAALVLALASTVIVLIVFAKTM 342
            LHP+Y +F+A PAAAS+AWK + G FD +A+S +FI+ FLY+ +     N  R   FS+AWW+YTFP +T + AA+ Y+EEV        AL L+L S+ IV ++   T+
Sbjct:  377 LHPVYCMFIATPAAASVAWKAVYGEFDAVARSFYFIALFLYISLV-VRINFFRGFRFSVAWWSYTFPMTTVSVAAIRYAEEVPTVLSKGLALGLSLTSSAIVSLLLISTL 485
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BLAST of mRNA_H-elongata_contig131866.2290.1 vs. uniprot
Match: A0A1J6I519_NICAT (Guard cell s-type anion channel slac1 n=13 Tax=Solanaceae TaxID=4070 RepID=A0A1J6I519_NICAT)

HSP 1 Score: 94.4 bits (233), Expect = 3.280e-20
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:   13 LHPIYFLFVAPPAAASIAWKGISGNFDMLAKSLFFISGFLYMFIAFFNSNLLRNAPFSIAWWAYTFPSSTFAFAAVLYSEEVAIKAVAQAALVLALASTVIVLIVFAKTM 342
            LHP+Y +F+A PAAASIAW  I   FD LA++ +FIS FLY+ +     N  R   FS+AWW+YTFP +T + A++ Y+EEV        AL L+  ST +V I+F  T+
Sbjct:  387 LHPVYSMFIATPAAASIAWGAIYDEFDGLARTCYFISLFLYLSLV-VRPNFFRGFRFSVAWWSYTFPMTTVSIASIKYAEEVPSFITKALALALSFMSTTMVFILFVSTL 495
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BLAST of mRNA_H-elongata_contig131866.2290.1 vs. uniprot
Match: UPI00188E251B (S-type anion channel SLAH2-like n=1 Tax=Triticum dicoccoides TaxID=85692 RepID=UPI00188E251B)

HSP 1 Score: 91.3 bits (225), Expect = 1.290e-19
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:   13 LHPIYFLFVAPPAAASIAWKGISGNFDMLAKSLFFISGFLYMFIAFFNSNLLRNAPFSIAWWAYTFPSSTFAFAAVLYSEEV 258
            LHP++FLFVA P+ AS+AW  ISG F+  AK L+F+S FLY+ +     NL R   FS+AWWAYTFP ++ A A VLYS EV
Sbjct:  188 LHPVFFLFVAAPSVASMAWARISGEFNNGAKLLYFVSLFLYVSLV-MRVNLFRVLRFSLAWWAYTFPMTSVALATVLYSSEV 268
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BLAST of mRNA_H-elongata_contig131866.2290.1 vs. uniprot
Match: A0A830BPK4_9LAMI (Guard cell s-type anion channel slac1 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BPK4_9LAMI)

HSP 1 Score: 91.3 bits (225), Expect = 3.540e-19
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1 
Query:   13 LHPIYFLFVAPPAAASIAWKGISGNFDMLAKSLFFISGFLYMFIAFFNSNLLRNAPFSIAWWAYTFPSSTFAFAAVLYSEEVAIKAVAQAALVLALASTVIVLIVFAKTM 342
            LHP+Y +F+A PAAASIAW  + G FD LA++ FFI+ FLY  +     N  R   FS+AWW+YTFP +T + A + Y+E+V        AL L+  S+ +V I+F  T+
Sbjct:  309 LHPVYSMFIATPAAASIAWGAVYGEFDGLARTCFFIALFLYCSLI-VRINFFRGFRFSVAWWSYTFPMTTASIATIKYAEQVPCVITKALALTLSFMSSTMVSILFVSTL 417
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BLAST of mRNA_H-elongata_contig131866.2290.1 vs. uniprot
Match: A0A3B6FEM0_WHEAT (Uncharacterized protein n=4 Tax=Triticum TaxID=4564 RepID=A0A3B6FEM0_WHEAT)

HSP 1 Score: 91.3 bits (225), Expect = 3.960e-19
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:   13 LHPIYFLFVAPPAAASIAWKGISGNFDMLAKSLFFISGFLYMFIAFFNSNLLRNAPFSIAWWAYTFPSSTFAFAAVLYSEEV 258
            LHP++FLFVA P+ AS+AW  ISG F+  AK L+F+S FLY+ +     NL R   FS+AWWAYTFP ++ A A VLYS EV
Sbjct:  401 LHPVFFLFVAAPSVASMAWARISGEFNNGAKLLYFVSLFLYVSLV-MRVNLFRVLRFSLAWWAYTFPMTSVALATVLYSSEV 481
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BLAST of mRNA_H-elongata_contig131866.2290.1 vs. uniprot
Match: UPI0019298F15 (uncharacterized protein LOC120284176 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0019298F15)

HSP 1 Score: 91.3 bits (225), Expect = 4.380e-19
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1 
Query:   13 LHPIYFLFVAPPAAASIAWKGISGNFDMLAKSLFFISGFLYMFIAFFNSNLLRNAPFSIAWWAYTFPSSTFAFAAVLYSEEVAIKAVAQAALVLALASTVIVLIVFAKTM 342
            LHP+Y +F+A PAAAS+AW  I   FD +A++ FFI+ FLYM +     N  R   FSIAWW+YTFP +T + A + Y+EEV        AL L+  S+ +V ++F  T+
Sbjct: 1061 LHPVYSMFIATPAAASLAWSSIYNQFDAIARTFFFIALFLYMSLV-VRINFFRGFKFSIAWWSYTFPMTTASLATIKYAEEVPCFMSKALALSLSFMSSTMVSLLFISTL 1169
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BLAST of mRNA_H-elongata_contig131866.2290.1 vs. uniprot
Match: A0A453A1H4_AEGTS (Uncharacterized protein n=5 Tax=Triticinae TaxID=1648030 RepID=A0A453A1H4_AEGTS)

HSP 1 Score: 90.5 bits (223), Expect = 4.880e-19
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:   13 LHPIYFLFVAPPAAASIAWKGISGNFDMLAKSLFFISGFLYMFIAFFNSNLLRNAPFSIAWWAYTFPSSTFAFAAVLYSEEV 258
            LHP++FLFVA P+ AS+AW  ISG F+  AK L+F+S FLY+ +     NL R   FS+AWWAYTFP ++ A A VLY+ EV
Sbjct:  217 LHPVFFLFVAAPSVASMAWTRISGEFNNGAKLLYFVSLFLYVSLV-VRVNLFRGFRFSLAWWAYTFPMTSVALATVLYASEV 297
[Close]
BLAST of mRNA_H-elongata_contig131866.2290.1 vs. uniprot
Match: A0A453A1D9_AEGTS (Uncharacterized protein n=3 Tax=Triticinae TaxID=1648030 RepID=A0A453A1D9_AEGTS)

HSP 1 Score: 90.5 bits (223), Expect = 5.340e-19
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:   13 LHPIYFLFVAPPAAASIAWKGISGNFDMLAKSLFFISGFLYMFIAFFNSNLLRNAPFSIAWWAYTFPSSTFAFAAVLYSEEV 258
            LHP++FLFVA P+ AS+AW  ISG F+  AK L+FIS FLY+ +     NL R   FS+AWWAYTFP ++ A A VLY+ EV
Sbjct:  233 LHPVFFLFVAAPSVASMAWTRISGEFNDGAKLLYFISLFLYVSLV-VRVNLFRGFRFSLAWWAYTFPMTSVALATVLYASEV 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131866.2290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSY8_ECTSI6.320e-3659.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1R0_ECTSI1.140e-2464.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2I0AY22_9ASPA2.390e-2045.45Guard cell S-type anion channel SLAC1 n=1 Tax=Apos... [more]
A0A1J6I519_NICAT3.280e-2046.36Guard cell s-type anion channel slac1 n=13 Tax=Sol... [more]
UPI00188E251B1.290e-1956.10S-type anion channel SLAH2-like n=1 Tax=Triticum d... [more]
A0A830BPK4_9LAMI3.540e-1944.55Guard cell s-type anion channel slac1 n=1 Tax=Phth... [more]
A0A3B6FEM0_WHEAT3.960e-1956.10Uncharacterized protein n=4 Tax=Triticum TaxID=456... [more]
UPI0019298F154.380e-1944.55uncharacterized protein LOC120284176 n=1 Tax=Diosc... [more]
A0A453A1H4_AEGTS4.880e-1954.88Uncharacterized protein n=5 Tax=Triticinae TaxID=1... [more]
A0A453A1D9_AEGTS5.340e-1956.10Uncharacterized protein n=3 Tax=Triticinae TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131866contigH-elongata_contig131866:61..656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue4.3e-29
Seed eggNOG ortholog2880.D7FSY8
GOsGO:0000302,GO:0001101,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005253,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006873,GO:0006950,GO:0006970,GO:0006979,GO:0008150,GO:0008308,GO:0008509,GO:0009270,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009987,GO:0010033,GO:0010035,GO:0010037,GO:0010118,GO:0010119,GO:0010193,GO:0015075,GO:0015103,GO:0015267,GO:0015318,GO:0015698,GO:0015711,GO:0016020,GO:0016021,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019902,GO:0019903,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0030104,GO:0031224,GO:0032501,GO:0033993,GO:0034220,GO:0042221,GO:0042493,GO:0042592,GO:0044425,GO:0044464,GO:0046677,GO:0048871,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050878,GO:0050891,GO:0050896,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071702,GO:0071944,GO:0072347,GO:0090332,GO:0097305,GO:0098656,GO:1901700,GO:1902456
EggNOG free text desc.voltage-gated anion channel activity
EggNOG OGs28IA4@1,2QQKN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.0662825-CDS-H-elongata_contig131866:60..1881622929783.0662825-CDS-H-elongata_contig131866:60..188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131866 61..188 -
1691679155.8288302-CDS-H-elongata_contig131866:60..1881691679155.8288302-CDS-H-elongata_contig131866:60..188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131866 61..188 -
1622929783.0844574-CDS-H-elongata_contig131866:442..6561622929783.0844574-CDS-H-elongata_contig131866:442..656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131866 443..656 -
1691679155.8400068-CDS-H-elongata_contig131866:442..6561691679155.8400068-CDS-H-elongata_contig131866:442..656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131866 443..656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131866.2290.1prot_H-elongata_contig131866.2290.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131866 61..656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131866.2290.1

>prot_H-elongata_contig131866.2290.1 ID=prot_H-elongata_contig131866.2290.1|Name=mRNA_H-elongata_contig131866.2290.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
ISATLHPIYFLFVAPPAAASIAWKGISGNFDMLAKSLFFISGFLYMFIAF
FNSNLLRNAPFSIAWWAYTFPSSTFAFAAVLYSEEVAIKAVAQAALVLAL
ASTVIVLIVFAKTM
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mRNA from alignment at H-elongata_contig131866:61..656-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131866.2290.1 ID=mRNA_H-elongata_contig131866.2290.1|Name=mRNA_H-elongata_contig131866.2290.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=596bp|location=Sequence derived from alignment at H-elongata_contig131866:61..656- (Himanthalia elongata Himel1 dioecious)
ATAAGTGCGACATTGCACCCAATCTACTTCTTGTTTGTCGCACCGCCTGC
CGCAGCGTCGATCGCGTGGAAGGGAATCTCTGGAAACTTCGACATGCTCG
CGAAATCCCTGTTCTTCATATCGGGATTCCTTTACATGTTCATAGCCTTC
TTCAACTCAAACCTCCTGAGAAACGCCCCCTTCAGCATCGCGTGGTGGGC
TTACACGTTTCCCTGTAAGTGTCAGGCGTGATATTGATAATAAAATGTCA
CAACTCGAGATTCGGGATGATAGTTTTGTTTAACGTCGCCTTCGTTCGTT
TAGCCGAGGAGGATACTACCCACTCACCGTCATGAGTCTCCTCTCGTCTT
TGATCTCGTCGCTGAATTTAGTTCTCTATTCAGTTCATCGCGTTTAAACA
CCAAGTTCAATATCCCCTCCCACCCTTCCCACCTGACGCGCGTGGCTAAC
TCGTCGACCTACCGTTAGCGTCAACATTCGCATTTGCAGCTGTCCTGTAC
TCCGAAGAGGTTGCCATCAAAGCAGTCGCGCAGGCCGCCCTGGTGCTGGC
TCTAGCGTCCACGGTAATTGTATTGATAGTCTTCGCGAAAACGATG
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Coding sequence (CDS) from alignment at H-elongata_contig131866:61..656-

>mRNA_H-elongata_contig131866.2290.1 ID=mRNA_H-elongata_contig131866.2290.1|Name=mRNA_H-elongata_contig131866.2290.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig131866:61..656- (Himanthalia elongata Himel1 dioecious)
ATAAGTGCGACATTGCACCCAATCTACTTCTTGTTTGTCGCACCGCCTGC
CGCAGCGTCGATCGCGTGGAAGGGAATCTCTGGAAACTTCGACATGCTCG
CGAAATCCCTGTTCTTCATATCGGGATTCCTTTACATGTTCATAGCCTTC
TTCAACTCAAACCTCCTGAGAAACGCCCCCTTCAGCATCGCGTGGTGGGC
TTACACGTTTCCCTATAAGTGCGACATTGCACCCAATCTACTTCTTGTTT
GTCGCACCGCCTGCCGCAGCGTCGATCGCGTGGAAGGGAATCTCTGGAAA
CTTCGACATGCTCGCGAAATCCCTGTTCTTCATATCGGGATTCCTTTACA
TGTTCATAGCCTTCTTCAACTCAAACCTCCTGAGAAACGCCCCCTTCAGC
ATCGCGTGGTGGGCTTACACGTTTCCCTCGTCAACATTCGCATTTGCAGC
TGTCCTGTACTCCGAAGAGGTTGCCATCAAAGCAGTCGCGCAGGCCGCCC
TGGTGCTGGCTCTAGCGTCCACGGTAATTGTATTGATAGTCTTCGCGAAA
ACGATGCGTCAACATTCGCATTTGCAGCTGTCCTGTACTCCGAAGAGGTT
GCCATCAAAGCAGTCGCGCAGGCCGCCCTGGTGCTGGCTCTAGCGTCCAC
GGTAATTGTATTGATAGTCTTCGCGAAAACGATG
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