mRNA_H-elongata_contig13186.2288.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: D8LJH7_ECTSI (Chromatin remodeling complex subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH7_ECTSI) HSP 1 Score: 285 bits (729), Expect = 1.190e-84 Identity = 152/226 (67.26%), Postives = 174/226 (76.99%), Query Frame = 1
Query: 151 MSKDQRAGLKKVKSASQWVVDKLAASAETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGY----KGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQAESINVDKVCDVDTVLTLDSGSRREDPFRSHR 816
MSKD RAGLKKVKSAS+WV++KL AS ET TKFVVFAHHK VLDRLQEAFEV GT G + ++ DD F+CLRIDG VPTA+R + + FNT+ RCRVL+VSITAGGQGLDFTAASNVVFVELPESP+WLRQAEDRLHRR+Q+KSVNVYL VLP GS+DD RWL LSEKLTTQTSV+NG AE+I+VD+V D + L D +RR R R
Sbjct: 1 MSKDHRAGLKKVKSASEWVIEKLIASEETLTKFVVFAHHKTVLDRLQEAFEVQGTRGNTCPFTPRAANDSDDASVGAFTCLRIDGSVPTALRASRLSE---FNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRRRQEKSVNVYLTVLPTGSHDDTRWLSLSEKLTTQTSVMNGTLYAENIDVDRVVDAGSTLDHDGPTRRPSRRRGRR 223
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: W7TN96_9STRA (Zinc finger ran-binding domain-containing protein 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN96_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.440e-28 Identity = 79/215 (36.74%), Postives = 106/215 (49.30%), Query Frame = 1
Query: 148 GMSKDQRAGLKKVKSASQWVVDKL---------------AASAETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQAESINVDKV 747
G S+ + G K+ +W+ D+L A KFV+FAHH VL L + + H +S ++I G P RQ + F D CR+ L+ ITAGG GLD AAS VFVELP SP WLRQAEDRLHRR Q + V +Y +VLP GS +D W + L T+V+N +AE ++V++V
Sbjct: 726 GQSEYHQLGHLKLGGVKEWLADRLLGGWLDAGVVGYEEDAIVEADAPKFVIFAHHLDVLAVLHGFLHNIFVRHRACRRLAFH-------WSQVQIQGSTPPETRQDLVKR---FKNDRYCRMALIGITAGGSGLDLAAASTAVFVELPNSPHWLRQAEDRLHRRGQRRRVQIYYLVLPPGSAEDKVWQCMRRLLRENTAVINSREEAEELDVNRV 930
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A5J4Y511_9CHLO (SNF2 family DNA-dependent ATPase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y511_9CHLO) HSP 1 Score: 121 bits (304), Expect = 2.070e-27 Identity = 80/198 (40.40%), Postives = 107/198 (54.04%), Query Frame = 1
Query: 151 MSKDQRAGLKKVKSASQWVVDKLAAS--------------AETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSV 702
MSK + GL K+ + +W+++ L A+ AE KF++FAHHK V+ +L A E G+G +G G +RIDGE + R+ L F D R L+SITA G GLDF+AAS VVFVELP+ + +RQAEDR HR Q SVNVY +V G++D+ RW LS L T+V
Sbjct: 633 MSKSHQTGLAKLPNGLEWLINALGAARQGSKGGVESQGEGAEPAPKFLIFAHHKDVMSKLANALEG----GQGKEGWG--------GVPYVRIDGETDSRDRRTACLQ---FKEDPSIRAALLSITAAGTGLDFSAASAVVFVELPQEVALVRQAEDRAHRHGQKLSVNVYFLVAK-GTSDEHRWQALSRSLERVTAV 814
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A0K9NWB6_ZOSMR (Uncharacterized protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NWB6_ZOSMR) HSP 1 Score: 118 bits (295), Expect = 3.020e-26 Identity = 72/208 (34.62%), Postives = 107/208 (51.44%), Query Frame = 1
Query: 160 DQRAGLKKVKSASQWVVDKLAAS--------AETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCDV 756
++ G+ K+ +W+ + AS + K ++FAHH VLD +QE CG +RIDG + R+ ++ + F T ++ L+ IT G GLDF++A NVVFVELP S S + QAEDR+HRR Q SVN+Y+ G++D+ WL L++ L +S++NG A I VD VC+V
Sbjct: 474 NEELGIAKLHKFGEWLYNHSIASYMDVILDVEQPSQKMLIFAHHIKVLDGIQELI-------------------CGKQIKFVRIDGSTSSTDRKTSL---ELFRTSNEVKIALIGITVGAAGLDFSSAQNVVFVELPHSASMMLQAEDRVHRRGQTNSVNIYIFC-GKGTSDESHWLHLNKSLYRVSSMMNGKVDAIREIEVDGVCEV 658
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A1Y1HPT8_KLENI (Helicase C-terminal domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HPT8_KLENI) HSP 1 Score: 113 bits (283), Expect = 4.270e-26 Identity = 77/204 (37.75%), Postives = 106/204 (51.96%), Query Frame = 1
Query: 163 QRAGLKKVKSASQWVVDKLAAS------AETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCD 753
Q+ GL K++ +W+ + + + AE K ++FAHH +LDR++ DCG + +R DG RQA + DF + D RV +V +TAGG GLDF+AA VVF ELP S + L A+DR HRR Q +VNVYL + D+ W+RLSE L T+VVNG A I+VD + D
Sbjct: 49 QQIGLAKLRGVREWLGNNVGLTPQKEEGAEDVPKMIIFAHHIELLDRIERYVH-----------------DCGVDY--VRFDGSTLGRDRQAAV--QDFKHRD-EIRVAIVGVTAGGVGLDFSAAQTVVFAELPTSSADLMHAKDRAHRRGQSSAVNVYLFCAK-DTGDETSWMRLSESLERVTTVVNGSENAVRGIHVDAIED 229
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A6P4ACM7_ZIZJJ (DNA annealing helicase and endonuclease ZRANB3 isoform X1 n=5 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4ACM7_ZIZJJ) HSP 1 Score: 117 bits (293), Expect = 5.660e-26 Identity = 91/277 (32.85%), Postives = 141/277 (50.90%), Query Frame = 1
Query: 1 RMPCYRRIVVRVVPHAEEL---KAALQAAGG-------FEPDPDG----DNGERSTRQTRWAGGMSKDQRAGLKKVKSASQWV-VDKLAASAETRT-KFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCDVDTVLTLDS 780
++P RR +V+++ ++ KAA+ G E D D D+GE R G +S +Q G+ K +W+ + L A +++ + K ++FAHH VLD +QE C G +RIDG RQ+ +L+ F + T+ +V ++ ITAGG GLDF++A +VVF+ELP+SPS + QAEDR HRR Q +VN+Y+ + DD W L++ L +S NG A + I V+ V ++T +DS
Sbjct: 445 QLPPKRRQIVQLLLKRSDIVSAKAAIGVVNGDASFRSVLEDDTDNLDVSDDGEGCCR----VGELS-NQELGIAKRSGFCEWLSIHSLIADSDSNSNKMIIFAHHHKVLDGVQEFI-------------------CEKGIGFVRIDGNTLARDRQSAVLS---FQSLTKVKVAIIGITAGGVGLDFSSAQHVVFLELPQSPSLMLQAEDRAHRRGQKNAVNIYVFCAK-DTMDDSHWQNLNKSLRRVSSATNGKYDAIQEIEVEGVSFLETFDRVDS 693
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A394D9Z4_LUPAN (Uncharacterized protein n=2 Tax=Lupinus TaxID=3869 RepID=A0A394D9Z4_LUPAN) HSP 1 Score: 116 bits (291), Expect = 1.030e-25 Identity = 80/262 (30.53%), Postives = 127/262 (48.47%), Query Frame = 1
Query: 1 RMPCYRRIVVRVVPHAEELKAALQAAGGFEPDPDGDNGERSTRQTRWAGGMSKDQRAGLKKVKSASQWV-VDKLAASAETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCDVDTVLTLDS 780
++P RR ++R++ ++ AA A G + D + + G Q G+ K+ +W+ + L A E +K ++FAHH VLD LQE C G +RIDG RQ+ +++ F + ++ ++ I A G GLDF+ A +VVF+ELP+SPS + QAEDR HRR Q +VNVY+ + D++ W L++ L +S +G A + I V+ + +D L DS
Sbjct: 421 QLPPKRRQIIRLLLKRSDIVAAKNAVGALKFDGSESSSDEDFEILDAPDGKLSYQELGIAKISGFREWLSLHPLIAEPENASKMIIFAHHHKVLDGLQEFV-------------------CEKGIGFVRIDGTTLARDRQSAVVS---FRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQSPSVMLQAEDRAHRRGQTNAVNVYIFSAK-DTLDELLWKNLNKSLHRVSSTTDGKYDAMKEIEVEGISYLDGSLKADS 659
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A444WWE9_ARAHY (Helicase C-terminal domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444WWE9_ARAHY) HSP 1 Score: 116 bits (290), Expect = 1.230e-25 Identity = 79/267 (29.59%), Postives = 131/267 (49.06%), Query Frame = 1
Query: 1 RMPCYRRIVVRVVPHAEELKAALQAAGGFE-PDPDGDNGERSTRQTRWAGGMSKDQRAGLKKVKSASQWV-VDKLAASAETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCDVDTVLTLDSGSRR 792
++P RR ++R++ ++ AA A G DP+ + + + G Q G+ K+ +W+ + L A +E K ++FAHH VLD +QE C G +RIDG RQ+ ++A F + + ++ ++ I A G GLDF+ A +VVF+ELP+ P+ + QAEDR HRR Q +VNVY+ ++D++RW L++ L + +G A + I VD + ++T DS +
Sbjct: 67 QLPPKRRQIIRLLLKKSDIVAAKTAVGALTIDDPERASEDMPLGNSDEVDGDLSVQELGIAKLSGFREWLSLHPLIAGSENSKKMIIFAHHHKVLDGVQEFI-------------------CEKGVGFVRIDGSTLPRDRQSAVVA---FRSSSEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQKNAVNVYIFCAK-DTSDELRWKNLNKSLHRVSKTTDGKYDAMKEIVVDDISYLETYFKTDSSDEQ 310
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A6P4C3Q4_ARADU (DNA annealing helicase and endonuclease ZRANB3 n=5 Tax=Arachis TaxID=3817 RepID=A0A6P4C3Q4_ARADU) HSP 1 Score: 116 bits (290), Expect = 1.380e-25 Identity = 79/267 (29.59%), Postives = 131/267 (49.06%), Query Frame = 1
Query: 1 RMPCYRRIVVRVVPHAEELKAALQAAGGFE-PDPDGDNGERSTRQTRWAGGMSKDQRAGLKKVKSASQWV-VDKLAASAETRTKFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCDVDTVLTLDSGSRR 792
++P RR ++R++ ++ AA A G DP+ + + + G Q G+ K+ +W+ + L A +E K ++FAHH VLD +QE C G +RIDG RQ+ ++A F + + ++ ++ I A G GLDF+ A +VVF+ELP+ P+ + QAEDR HRR Q +VNVY+ ++D++RW L++ L + +G A + I VD + ++T DS +
Sbjct: 419 QLPPKRRQIIRLLLKKSDIVAAKTAVGALTIDDPERASEDMPLGNSDEVDGDLSVQELGIAKLSGFREWLSLHPLIAGSENSKKMIIFAHHHKVLDGVQEFI-------------------CEKGVGFVRIDGSTLPRDRQSAVVA---FRSSSEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQKNAVNVYIFCAK-DTSDELRWKNLNKSLHRVSKTTDGKYDAMKEIVVDDISYLETYFKTDSSDEQ 662
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Match: A0A6P9E5V3_JUGRE (DNA annealing helicase and endonuclease ZRANB3-like isoform X1 n=23 Tax=Juglandaceae TaxID=16714 RepID=A0A6P9E5V3_JUGRE) HSP 1 Score: 115 bits (288), Expect = 2.590e-25 Identity = 76/222 (34.23%), Postives = 112/222 (50.45%), Query Frame = 1
Query: 163 QRAGLKKVKSASQWV-VDKLAASAETRT---------KFVVFAHHKAVLDRLQEAFEVAGTFGEGYKGSSSHDDDCGAGFSCLRIDGEVPTAVRQATILANDFFNTDTRCRVLLVSITAGGQGLDFTAASNVVFVELPESPSWLRQAEDRLHRRKQDKSVNVYLMVLPAGSNDDIRWLRLSEKLTTQTSVVNGVAQA-ESINVDKVCDVDTVLTLDSGSRRE 795
Q G+ K+ +W+ + L A +++ K ++FAHH VLD +QE C G S +RIDG RQ+ +L+ F + T +V ++ ITAGG GLDF++A NVVF+ELP+SPS + QAEDR HRR Q +VN+Y+ G+ D+ W L+ L +S NG A + I VD V ++T D + +
Sbjct: 493 QELGIAKLSGFREWLSIHPLVAESDSTEVLDLHFSSRKMIIFAHHHKVLDGIQEFV-------------------CEKGISFVRIDGNTLARDRQSAVLS---FKSSTEVKVAIIGITAGGVGLDFSSAQNVVFLELPKSPSLMLQAEDRAHRRGQTSAVNIYIFCAK-GTLDESHWSYLNRSLRHVSSTTNGKYDAIQEIQVDGVSYLETSDKTDGSCKNQ 691 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13186.2288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13186.2288.1 >prot_H-elongata_contig13186.2288.1 ID=prot_H-elongata_contig13186.2288.1|Name=mRNA_H-elongata_contig13186.2288.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp MPCYRRIVVRVVPHAEELKAALQAAGGFEPDPDGDNGERSTRQTRWAGGMback to top mRNA from alignment at H-elongata_contig13186:219..3084+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13186.2288.1 ID=mRNA_H-elongata_contig13186.2288.1|Name=mRNA_H-elongata_contig13186.2288.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2866bp|location=Sequence derived from alignment at H-elongata_contig13186:219..3084+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13186:219..3084+ >mRNA_H-elongata_contig13186.2288.1 ID=mRNA_H-elongata_contig13186.2288.1|Name=mRNA_H-elongata_contig13186.2288.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1632bp|location=Sequence derived from alignment at H-elongata_contig13186:219..3084+ (Himanthalia elongata Himel1 dioecious)back to top |