prot_H-elongata_contig13186.2289.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13186.2289.1
Unique Nameprot_H-elongata_contig13186.2289.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length228
Homology
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BLAST of mRNA_H-elongata_contig13186.2289.1 vs. uniprot
Match: D8LJH7_ECTSI (Chromatin remodeling complex subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH7_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.300e-10
Identity = 47/95 (49.47%), Postives = 57/95 (60.00%), Query Frame = 0 
Query:  134 GNVGVFGSGRVPSGQEEKQ-DDAEKLLFLVSHYTGRVHVFEGREGDADADGGIEDDDFDQEK------KPRHCRCNFRPEDLDRLFEAAKQASLL 221
            G+ GV G  R   G+E  Q   A++L FLVS  TGRVHV++   GD D DG                 +P+HCRCNFRPEDLDRLFEA+K+A LL
Sbjct:  702 GSEGVGGGDR--GGEELLQLKAAKRLYFLVSGNTGRVHVYKKVGGD-DEDGXXXXXXXXXXXXXXXXARPQHCRCNFRPEDLDRLFEASKEALLL 793
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BLAST of mRNA_H-elongata_contig13186.2289.1 vs. uniprot
Match: A0A6H5KDZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ8_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 5.780e-9
Identity = 45/99 (45.45%), Postives = 54/99 (54.55%), Query Frame = 0 
Query:  134 GNVGVFGSGRVPSGQEEKQ-DDAEKLLFLVSHYTGRVHVFEGREGDADADGGIEDDDFDQEK----------KPRHCRCNFRPEDLDRLFEAAKQASLL 221
            G+ GV G  R   G+E  Q   A++L FLVS  TGRVHV++   GD                          +P+HCRCNFRPEDLDRLFEAAK+A LL
Sbjct:  504 GSEGVGGGDR--GGEELLQLKAAKRLYFLVSGNTGRVHVYKKVGGDXXXXXXXXXXXXXXXXXXXXXXXXXARPQHCRCNFRPEDLDRLFEAAKEALLL 600
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13186.2289.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJH7_ECTSI2.300e-1049.47Chromatin remodeling complex subunit n=1 Tax=Ectoc... [more]
A0A6H5KDZ8_9PHAE5.780e-945.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13186contigH-elongata_contig13186:4268..5538 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13186.2289.1mRNA_H-elongata_contig13186.2289.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13186 4268..5540 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13186.2289.1 ID=prot_H-elongata_contig13186.2289.1|Name=mRNA_H-elongata_contig13186.2289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
PFFVNSTGRPSNPFSLFKNTSLSLSPPLFSPQGMGKTPSFPSPLALQQGC
GHNVDLSGTTDTPRIVGGCPRTPRTPGASQDGDGSAFSPLMLVDACSDGE
EGKMTASGEGSSREGDVQITVDASLCHKGGRNEGNVGVFGSGRVPSGQEE
KQDDAEKLLFLVSHYTGRVHVFEGREGDADADGGIEDDDFDQEKKPRHCR
CNFRPEDLDRLFEAAKQASLLPLKGLGL
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