mRNA_H-elongata_contig13186.2289.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig13186.2289.1
Unique Name	mRNA_H-elongata_contig13186.2289.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig13186.2289.1 vs. uniprot
Match: D8LJH7_ECTSI (Chromatin remodeling complex subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH7_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.300e-10
Identity = 47/95 (49.47%), Postives = 57/95 (60.00%), Query Frame = 1

Query:  400 GNVGVFGSGRVPSGQEEKQ-DDAEKLLFLVSHYTGRVHVFEGREGDADADGGIEDDDFDQEK------KPRHCRCNFRPEDLDRLFEAAKQASLL 663
            G+ GV G  R   G+E  Q   A++L FLVS  TGRVHV++   GD D DG                 +P+HCRCNFRPEDLDRLFEA+K+A LL
Sbjct:  702 GSEGVGGGDR--GGEELLQLKAAKRLYFLVSGNTGRVHVYKKVGGD-DEDGXXXXXXXXXXXXXXXXARPQHCRCNFRPEDLDRLFEASKEALLL 793

[Close]

BLAST of mRNA_H-elongata_contig13186.2289.1 vs. uniprot
Match: A0A6H5KDZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ8_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 5.780e-9
Identity = 45/99 (45.45%), Postives = 54/99 (54.55%), Query Frame = 1

Query:  400 GNVGVFGSGRVPSGQEEKQ-DDAEKLLFLVSHYTGRVHVFEGREGDADADGGIEDDDFDQEK----------KPRHCRCNFRPEDLDRLFEAAKQASLL 663
            G+ GV G  R   G+E  Q   A++L FLVS  TGRVHV++   GD                          +P+HCRCNFRPEDLDRLFEAAK+A LL
Sbjct:  504 GSEGVGGGDR--GGEELLQLKAAKRLYFLVSGNTGRVHVYKKVGGDXXXXXXXXXXXXXXXXXXXXXXXXXARPQHCRCNFRPEDLDRLFEAAKEALLL 600

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig13186.2289.1 vs. uniprot

BLAST of mRNA_H-elongata_contig13186.2289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LJH7_ECTSI	2.300e-10	49.47	Chromatin remodeling complex subunit n=1 Tax=Ectoc...	[more]
A0A6H5KDZ8_9PHAE	5.780e-9	45.45	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig13186	contig	H-elongata_contig13186:4268..5540 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	71.2
Seed ortholog evalue	6.8e-10
Seed eggNOG ortholog	2880.D8LJH7
KEGG ko	ko:K10876,ko:K14440
GOs	GO:0000018,GO:0000228,GO:0000733,GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0017111,GO:0019219,GO:0019222,GO:0031297,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031593,GO:0031974,GO:0031981,GO:0032392,GO:0033554,GO:0034641,GO:0034645,GO:0036292,GO:0036310,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0045910,GO:0045934,GO:0046483,GO:0048478,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070530,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0097617,GO:0140030,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.	annealing helicase activity
EggNOG OGs	COG0553@1,KOG1000@2759
EC	3.6.4.12
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko03036,ko03400
Hectar predicted targeting category	other localisation
Exons	2
Model size	686
Cds size	684
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929782.864704-CDS-H-elongata_contig13186:4267..4866	1622929782.864704-CDS-H-elongata_contig13186:4267..4866	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig13186 4268..4866 +
1691679155.7159774-CDS-H-elongata_contig13186:4267..4866	1691679155.7159774-CDS-H-elongata_contig13186:4267..4866	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig13186 4268..4866 +
1622929782.8810837-CDS-H-elongata_contig13186:5453..5538	1622929782.8810837-CDS-H-elongata_contig13186:5453..5538	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig13186 5454..5538 +
1691679155.7329185-CDS-H-elongata_contig13186:5453..5538	1691679155.7329185-CDS-H-elongata_contig13186:5453..5538	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig13186 5454..5538 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig13186.2289.1	prot_H-elongata_contig13186.2289.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig13186 4268..5538 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig13186:4268..5540+
coding sequence from alignment at H-elongata_contig13186:4268..5540+

protein sequence of mRNA_H-elongata_contig13186.2289.1

>prot_H-elongata_contig13186.2289.1 ID=prot_H-elongata_contig13186.2289.1|Name=mRNA_H-elongata_contig13186.2289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
PFFVNSTGRPSNPFSLFKNTSLSLSPPLFSPQGMGKTPSFPSPLALQQGC
GHNVDLSGTTDTPRIVGGCPRTPRTPGASQDGDGSAFSPLMLVDACSDGE
EGKMTASGEGSSREGDVQITVDASLCHKGGRNEGNVGVFGSGRVPSGQEE
KQDDAEKLLFLVSHYTGRVHVFEGREGDADADGGIEDDDFDQEKKPRHCR
CNFRPEDLDRLFEAAKQASLLPLKGLGL

mRNA from alignment at H-elongata_contig13186:4268..5540+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig13186.2289.1 ID=mRNA_H-elongata_contig13186.2289.1|Name=mRNA_H-elongata_contig13186.2289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1273bp|location=Sequence derived from alignment at H-elongata_contig13186:4268..5540+ (Himanthalia elongata Himel1 dioecious)
CCTTTCTTCGTCAACTCCACCGGCCGCCCGTCAAATCCATTCTCGCTGTT
CAAGAACACCTCGCTATCGCTATCACCACCGCTCTTTTCACCTCAAGGCA
TGGGCAAGACGCCCTCCTTCCCATCACCGCTAGCGCTGCAGCAAGGATGT
GGTCATAACGTTGACCTCTCGGGGACGACAGACACGCCCCGGATCGTGGG
GGGATGTCCACGAACTCCAAGGACACCAGGGGCCTCACAGGACGGGGATG
GAAGCGCGTTTTCTCCCCTCATGTTGGTGGACGCGTGTTCCGACGGCGAA
GAAGGGAAGATGACGGCATCGGGTGAAGGTTCAAGTAGAGAGGGAGATGT
GCAGATTACGGTTGATGCGAGTCTGTGTCACAAGGGTGGTCGTAATGAGG
GAAACGTAGGAGTTTTCGGCAGTGGAAGAGTCCCATCGGGACAGGAGGAA
AAACAAGATGATGCCGAGAAGCTGTTGTTCCTGGTTAGCCACTACACCGG
GAGGGTGCACGTGTTCGAGGGCAGAGAGGGCGATGCTGATGCTGATGGAG
GCATCGAAGACGACGATTTCGACCAGGAGAAGAAGCCCCGGCATTGCAGG
TAAAATATTTAGTGGGAATAGCATAGAATCCTAACCCTATCGACGCCTGT
CACGGAGTCAGCGCTGACTCTCTATCAATAGTGCTTGTTATAATAGTTAA
TGCTAATGTTAGTGCTTATGTTAATGTTAGTATTTATGAAAGCTAAACCG
AGGGCTCGACCCCCGATGACCATAATTTTAATTTGGCAGTTTTTTCATTG
TTGCGAGAAAATAATAAAATCGTTAGGCTGAAAAGAGTCAGCTGTACAGT
ACTGTTGTGGTATGTCTATCGTATGGCCGTATTGCCGTGGATTGCACTAT
GATATATTGAAGGGTTTGCGATCTTGTGGTGAGGTGGGGAATGCAATCCG
ACCCCCCCTAGTCGTTTTTTGCCCGAGTTGCGTCTAACGACTCCTGCTAC
CGAGTCAGCGTCAATCATGTGCGGTAGCAACCTCTGTACCGTACCATTAG
TACTTCACGTCCCACTGTCGCCGGTGGGATGCAATAGACCGTACCAGAGA
AATATACTAGTGAGAAGAATAGACCGAACTCTCCAGTGTCGACCCTCCGC
TGTTGAATCATTTTTGAATCCTGCAAACATGTCCAGGTGTAACTTCCGTC
CGGAGGACTTAGATCGTCTCTTCGAGGCCGCCAAGCAAGCTTCACTGTTG
CCGTTAAAAGGGTTAGGGTTAGG

Coding sequence (CDS) from alignment at H-elongata_contig13186:4268..5540+

>mRNA_H-elongata_contig13186.2289.1 ID=mRNA_H-elongata_contig13186.2289.1|Name=mRNA_H-elongata_contig13186.2289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig13186:4268..5540+ (Himanthalia elongata Himel1 dioecious)
CCTTTCTTCGTCAACTCCACCGGCCGCCCGTCAAATCCATTCTCGCTGTT
CAAGAACACCTCGCTATCGCTATCACCACCGCTCTTTTCACCTCAAGGCA
TGGGCAAGACGCCCTCCTTCCCATCACCGCTAGCGCTGCAGCAAGGATGT
GGTCATAACGTTGACCTCTCGGGGACGACAGACACGCCCCGGATCGTGGG
GGGATGTCCACGAACTCCAAGGACACCAGGGGCCTCACAGGACGGGGATG
GAAGCGCGTTTTCTCCCCTCATGTTGGTGGACGCGTGTTCCGACGGCGAA
GAAGGGAAGATGACGGCATCGGGTGAAGGTTCAAGTAGAGAGGGAGATGT
GCAGATTACGGTTGATGCGAGTCTGTGTCACAAGGGTGGTCGTAATGAGG
GAAACGTAGGAGTTTTCGGCAGTGGAAGAGTCCCATCGGGACAGGAGGAA
AAACAAGATGATGCCGAGAAGCTGTTGTTCCTGGTTAGCCACTACACCGG
GAGGGTGCACGTGTTCGAGGGCAGAGAGGGCGATGCTGATGCTGATGGAG
GCATCGAAGACGACGATTTCGACCAGGAGAAGAAGCCCCGGCATTGCAGC
CTTTCTTCGTCAACTCCACCGGCCGCCCGTCAAATCCATTCTCGCTGTTC
AAGAACACCTCGCTATCGCTATCACCACCGCTCTTTTCACCTCAAGGCAT
GGGCAAGACGCCCTCCTTCCCATCACCGCTAGCGCTGCAGCAAGGATGTG
GTCATAACGTTGACCTCTCGGGGACGACAGACACGCCCCGGATCGTGGGG
GGATGTCCACGAACTCCAAGGACACCAGGGGCCTCACAGGACGGGGATGG
AAGCGCGTTTTCTCCCCTCATGTTGGTGGACGCGTGTTCCGACGGCGAAG
AAGGGAAGATGACGGCATCGGGTGAAGGTTCAAGTAGAGAGGGAGATGTG
CAGATTACGGTTGATGCGAGTCTGTGTCACAAGGGTGGTCGTAATGAGGG
AAACGTAGGAGTTTTCGGCAGTGGAAGAGTCCCATCGGGACAGGAGGAAA
AACAAGATGATGCCGAGAAGCTGTTGTTCCTGGTTAGCCACTACACCGGG
AGGGTGCACGTGTTCGAGGGCAGAGAGGGCGATGCTGATGCTGATGGAGG
CATCGAAGACGACGATTTCGACCAGGAGAAGAAGCCCCGGCATTGCAGGT
GTAACTTCCGTCCGGAGGACTTAGATCGTCTCTTCGAGGCCGCCAAGCAA
GCTTCACTGTTGCCGTTAAAAGGGTTAGGGTTAGTGTAACTTCCGTCCGG
AGGACTTAGATCGTCTCTTCGAGGCCGCCAAGCAAGCTTCACTGTTGCCG
TTAAAAGGGTTAGGGTTA