mRNA_H-elongata_contig131854.2286.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131854.2286.1
Unique NamemRNA_H-elongata_contig131854.2286.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig131854.2286.1 vs. uniprot
Match: D7G6H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H7_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.670e-14
Identity = 63/143 (44.06%), Postives = 77/143 (53.85%), Query Frame = 1 
Query:   37 DEEDTRR-SARWGVKPNSPPKLGV-----ALGNPLKAVGSSLKVVGQGATAAKDALYDVANAITTPGSLLPKLPEQQRDSSDQGEVECGLVSGGTSDGIIASGKSTG-------GGLVGALRVVGEGAVITKDAFWGTLDALG 426
            +EED R+ SARWGVKP SPPKL       +L NPL  VG SL+ VG G  A KDA+Y  A+A    GS+     EQ +  +D          GG    + A+   T        GG   ALR++  GAV  KDAFWG+LDALG
Sbjct:  124 EEEDVRKKSARWGVKPPSPPKLPSIPDVRSLKNPLDGVGKSLRKVGSGVAAVKDAVYGAADAA---GSVA----EQVQGVADAAAAGKAPGDGGAMPQLAATASVTPVAPSNAPGGAKRALRLLVGGAVAAKDAFWGSLDALG 259
[Close]
BLAST of mRNA_H-elongata_contig131854.2286.1 vs. uniprot
Match: A0A6H5L8H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 9.870e-14
Identity = 63/146 (43.15%), Postives = 76/146 (52.05%), Query Frame = 1 
Query:   37 DEEDTRR-SARWGVKPNSPPKLGV-----ALGNPLKAVGSSLKVVGQGATAAKDALYDVANAITTPGSLLPKLPEQQRDSSDQGEVECGLVSGGTSDGIIASGKSTG-------GGLVGALRVVGEGAVITKDAFWGTLDALGYAA 435
            +EED R+ SARWGVKP SPPKL       +L NPL  VG SL+ VG G  A KDA Y  A+A    GS+     EQ +  +D          GG    + A+   T        GG   ALR++  GAV  KDAFWG+LD L  AA
Sbjct:  137 EEEDVRKKSARWGVKPPSPPKLPSIPDVRSLKNPLDGVGKSLRKVGSGVAAVKDAAYGAADAA---GSIA----EQVQGVADAAAAGKAAGDGGAMPQLAATASVTPVVPSNAPGGAKRALRLLVGGAVAAKDAFWGSLDTLSSAA 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131854.2286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6H7_ECTSI2.670e-1444.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8H1_9PHAE9.870e-1443.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131854contigH-elongata_contig131854:143..1329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929782.636179-CDS-H-elongata_contig131854:142..4341622929782.636179-CDS-H-elongata_contig131854:142..434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131854 143..434 +
1691679155.674525-CDS-H-elongata_contig131854:142..4341691679155.674525-CDS-H-elongata_contig131854:142..434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131854 143..434 +
1622929782.6534388-CDS-H-elongata_contig131854:1117..13291622929782.6534388-CDS-H-elongata_contig131854:1117..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131854 1118..1329 +
1691679155.6818085-CDS-H-elongata_contig131854:1117..13291691679155.6818085-CDS-H-elongata_contig131854:1117..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131854 1118..1329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131854.2286.1prot_H-elongata_contig131854.2286.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131854 143..1329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131854.2286.1

>prot_H-elongata_contig131854.2286.1 ID=prot_H-elongata_contig131854.2286.1|Name=mRNA_H-elongata_contig131854.2286.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
PSSQKSLEREERDEEDTRRSARWGVKPNSPPKLGVALGNPLKAVGSSLKV
VGQGATAAKDALYDVANAITTPGSLLPKLPEQQRDSSDQGEVECGLVSGG
TSDGIIASGKSTGGGLVGALRVVGEGAVITKDAFWGTLDALGYAADAVGK
APETTRSVAEGARAALQG
back to top

mRNA from alignment at H-elongata_contig131854:143..1329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131854.2286.1 ID=mRNA_H-elongata_contig131854.2286.1|Name=mRNA_H-elongata_contig131854.2286.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1187bp|location=Sequence derived from alignment at H-elongata_contig131854:143..1329+ (Himanthalia elongata Himel1 dioecious)
CCTTCGTCACAGAAATCACTGGAGAGGGAGGAACGAGACGAAGAGGACAC
GCGCAGAAGTGCGCGCTGGGGCGTGAAGCCTAACTCTCCGCCCAAGCTCG
GGGTGGCCCTGGGCAACCCCCTCAAGGCCGTGGGATCGTCGTTGAAGGTA
GTCGGGCAAGGTGCGACAGCGGCCAAGGACGCGCTGTACGACGTTGCTAA
TGCGATCACTACCCCAGGCAGTCTCCTTCCCAAGCTTCCCGAGCAGCAGC
GGGATAGCTCAGACCAAGGTGAGGTGGAATGTGGACTAGTGAGTCAGGTC
GATAGCAGTTATATGCTAGAGTCGGTGGAGAGCAGAGGAAGCACGCGGTA
TATAGATCAACTCTGGGGGGCAAGGATAACGAGTCGTTTTGGGCCTTCTC
TTGTGTACGGATCTTCTTCCTTCTCCGTAAATGTTTTTCTTTGTTTTTGT
CCCAAAAAGTGTGCGGATCAATATAATTACTTAATATCATTGTCGTTTGC
CCATGTTTCTTTAAAAACATTTAAACTAATTAAAACAACCCTCCAAACAT
TCATTTTAATCAAACTACACTATTCATGTTATTAATAGCATAAGTATACT
ACAAGCAATACGATAGTTGGTCCCCTGGACTGCACCCCTCACAGCGCTAA
GAAGGTGTGGATGTTCCGAGGGTTTGAATGAGTTCATATGTTCTTGAATA
AAAACATGAGCTATTCCGACCAGGGGGGGGATATTCACTAAAACCTCCAG
GGATTGCCTTTGTAAAGTCTCACTCCTCGACTCTCCGTGTCGCCACGGGG
GACCGGGTACTATCCATTTGTAACAATCGCGCCGGGCTATCGAGACAGGG
TTAACAGCGAACTGTGACCGGAGCTAGGCATAGGCCTTATCGCCATAATA
ATGCGAGAGCAATGCAGCAGCCACGCAAACAGCACGTTTCAATAAATCCA
CGCCTATGTCTTGGGCCGACGGTAGGCGGGGGAACCTCAGATGGCATCAT
CGCGAGCGGCAAGTCGACGGGAGGGGGCTTGGTGGGAGCTTTGAGAGTCG
TAGGTGAAGGGGCGGTGATTACCAAGGACGCCTTCTGGGGCACGCTCGAC
GCGCTGGGGTACGCGGCTGACGCCGTCGGGAAGGCCCCGGAAACGACCAG
ATCTGTCGCCGAGGGGGCAAGGGCGGCGCTCCAAGGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig131854:143..1329+

>mRNA_H-elongata_contig131854.2286.1 ID=mRNA_H-elongata_contig131854.2286.1|Name=mRNA_H-elongata_contig131854.2286.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig131854:143..1329+ (Himanthalia elongata Himel1 dioecious)
CCTTCGTCACAGAAATCACTGGAGAGGGAGGAACGAGACGAAGAGGACAC
GCGCAGAAGTGCGCGCTGGGGCGTGAAGCCTAACTCTCCGCCCAAGCTCG
GGGTGGCCCTGGGCAACCCCCTCAAGGCCGTGGGATCGTCGTTGAAGGTA
GTCGGGCAAGGTGCGACAGCGGCCAAGGACGCGCTGTACGACGTTGCTAA
TGCGATCACTACCCCAGGCAGTCTCCTTCCCAAGCTTCCCGAGCAGCAGC
GGGATAGCTCAGACCAAGGTGAGGTGGAATGTGGACTAGTGACCTTCGTC
ACAGAAATCACTGGAGAGGGAGGAACGAGACGAAGAGGACACGCGCAGAA
GTGCGCGCTGGGGCGTGAAGCCTAACTCTCCGCCCAAGCTCGGGGTGGCC
CTGGGCAACCCCCTCAAGGCCGTGGGATCGTCGTTGAAGGTAGTCGGGCA
AGGTGCGACAGCGGCCAAGGACGCGCTGTACGACGTTGCTAATGCGATCA
CTACCCCAGGCAGTCTCCTTCCCAAGCTTCCCGAGCAGCAGCGGGATAGC
TCAGACCAAGGTGAGGTGGAATGTGGACTAGTGAGCGGGGGAACCTCAGA
TGGCATCATCGCGAGCGGCAAGTCGACGGGAGGGGGCTTGGTGGGAGCTT
TGAGAGTCGTAGGTGAAGGGGCGGTGATTACCAAGGACGCCTTCTGGGGC
ACGCTCGACGCGCTGGGGTACGCGGCTGACGCCGTCGGGAAGGCCCCGGA
AACGACCAGATCTGTCGCCGAGGGGGCAAGGGCGGCGCTCCAAGGCGCGG
GGGAACCTCAGATGGCATCATCGCGAGCGGCAAGTCGACGGGAGGGGGCT
TGGTGGGAGCTTTGAGAGTCGTAGGTGAAGGGGCGGTGATTACCAAGGAC
GCCTTCTGGGGCACGCTCGACGCGCTGGGGTACGCGGCTGACGCCGTCGG
GAAGGCCCCGGAAACGACCAGATCTGTCGCCGAGGGGGCAAGGGCGGCGC
TCCAAGGC
back to top