mRNA_H-elongata_contig1317.2285.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1317.2285.1 vs. uniprot
Match: A0A6H5JU62_9PHAE (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU62_9PHAE) HSP 1 Score: 759 bits (1960), Expect = 5.390e-238 Identity = 755/1791 (42.16%), Postives = 947/1791 (52.88%), Query Frame = 1
Query: 1 EIEEEFPALPFPSGCETQPKTL--PPKPREESPRTVTDA-----LDYASVAEKLVAGTAIXXXXXXXXXVSNAVMSPGQRSDFAK-DNFRRLSVLPGFRKGRRSGSKPNVDDGSLEPTKEGPHSASLRLCDTIR-GVTETKTKSIEIIGPLLSRPPALAPQPTPAAKSLPSQHAGATVATTALRKRLRERWFRLEAMKKAERQKEVAERSLMGVEDRESMEREVT-LGRRPGDRNDARGSNLVGIRPPYDDECDESVLPPRADCTTYGNREASIVGTVMSSGASGESTLSTRDVKFLSAAGAAAVKRAEATAIVSTASVVTLAPDVSDSAPSLSRPASNRPQKTTALSRDESREALRGRVPDLPGASANDDKRSTSDYSDLLEKGSGRGRAQEVARCPA------HVASEAGMAGTLNEQLVRTGGAVADSKDKLRRXXXXXXXXXXSLECVNLLLKQGSRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAVLLSFGARPDEPDVDGKWSCQAPPPLRRITPVCQAAMNGQGELLMTMASSNQACRKGSNAMEPHLVTAAVPRQGGEG---RGSSTAKRRPLASSGRPLVASASISVGGVGE---LSALSPVHEAAAAGQVETLSLLLQLGVSFEERDSAAGMAGDTPLGRAVRCGRLDCVRVLLDAGAMVGRENTRXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGRSQGRLTSANGRVPAGARDNMLARRRSVPLEVALREGQLACAAVLIEGGARINIQALRMVKLEPSFAASDPGDRSLARGPRVKYAGSACAV---GGVGVGDMTARDAGV-TRLLALQASLLECQSSDVRHAADTASPDGGGLQEGGVLPDIDVSFGVLESVVAEDGALASALNLAPNSTAMFDCTPEVSQVFGKVGETAIERKAQAK----VECVGGRMAALGDCD---------------------------------------------------------------ALLTGQER--------------GSIPPGE------------LPSAAVTAATTASIMVNFTTGSRRPRATSVVRWGSARGDVLVRFWGPGTMAALVTHVYSGRPPDEIRVEGLGRLLAAAKSLQMPRLARQVEHLLSATVTEHRGSGRSAQLGDVARLLRGARALGARDLEKRCTLHLQANGGSPAVMKLRRQLDIPSLNASDVARGLARLKESGYLGSGPAHAWSSAGAVRKTSTSAAVEAAKRTVDLSLRKRAVDFDQLLPLLVDPPR----CMSTLSIGRHERAVLLTAALSDACLGRPSEAFAPRTKEEHERGIISSHAQEQ-HPLLRGRRQSCCDVLGA---------ASVPLASNFAAFSHGMGWLLETGAVADVVLVLPARGDVT--VEPSVMRSNG----------------GGATVVDMAEGKPLALGESPDSEK-----GRLEQRGASKKKADSDR----------RNRFLAHSVVLAARSEKFAAMLRFIRRQDDAIGRSCADD-----HDDDITEEANLVDRTNFLRDRSV-------DAAAGDESSGLESTTADGSLAVDSEPPRSPVCGGRPPNTWN---GRRPRRDPQPRELELHSPLLSPQSMVLFLEFLYTGVLDPGISVTELFELALIADEYLVPDLTLQAETLLVEYLV-----------THTVDGASHGFNSSSLLSIGQPGRDIREEDDTASTPLEALQLAASVGMRKLSVVAARAVLLRLDTVSRSEAFEASGMTKRELVVAALGA 4797
E +E FPALP SG P L P +P P VT A LDY+S+ ++L A A S G A+ D+F RLSVLP GR +KP ++ P S+ LR+ + G T I L S+ P L P+ A + S A+ T ALR RLR+RWFRLEA +KA+RQ+E AER+LM ED ++ + LG GD N S G+R + DE R AS T M+S + S P N+ + + +S S A + + +A+ +T ++L + GR PA + A +AGMAG LN+ LVR+GG AD KDKLRR SLECV+LLLKQG+RLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ELLMTMA+SNQA + + + + ++ G+ RG++T KRR L S P ++++ + GG G + ALSP+HEAAA+GQ ETLSLLLQLGVS EERD+AAG+ GDTPLGRAVR G++DC R+LLDAGAMVGREN RXXXXXXXXXXXXXXXXXXXXXXXX DGG+S GRLT A+GR P G R+ M+ARRR PLE+ALREGQLACAA LIEGGA IN + LR VKL+PS D+S+A+G +V YAG++ GG G+ A AG L LQA +L+ S +V +D+A PDGGGL+ V P+ D L+ V + +LA + G ETA E +A + VE VGG LG+CD A G+E G PPG+ PS + A A+ T + A V+ WG RG+V VRFWG GTM+A+V HVY+G+PP + +GLGRLL A+ SL+M RL RQVEHLLS + +G RS Q + ARLLR AR L A DLEKRCTL++QANG PAVMKLRR+L +PSLN DV RGLARL SGYLGSGPA+AWSS+GAV +S SA V AAK VDLSLRKRAVDFDQL+PLL+D R C STLSIGR ERAVLLTAAL+DAC P E +PR++ + + + + P LRG CCD + +VPL SN +AFSHGMGWLL TG VADVVLVLP + + + P+ + +G GG V +E + + DS G ++ G+ + DS + +RFLAHS+VLA+RSEKF+AMLRF++ QD R+ AD DDDI +A+ +R + R+ +AA ++ +++ DG + S+PPR PP+ RRPRR+ PRE+ELHSP+L+PQS+ LFLEFLYTGVLD +S EL ELALIADEYLVPDL QAE LLVE LV T + + + F+S++ G + E+DT S PLE LQL S+ + LS AARAVLL+L+ VSRSEAFE S M+KRELV+AAL A
Sbjct: 350 EDDEAFPALPPASGPRNTPGELLAPVQP----PPVVTAAAGHVALDYSSLKDRLAIEAAAA--------AKAAAESSGALGGTAEGDDFSRLSVLPSVGSGRGGEAKPGSTSSAILPV-----SSDLRVLEGCSPGSMGTDGDVSRGISALQSQSPKLPSPPSRQAVAANSVTRCASAETAALRARLRDRWFRLEAARKAQRQREAAERALMTAEDCATLGSAASVLGWNGGDGN--HSSAEEGMRSGSGENHDEGEAK---------GRRASSSHTAMTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLPMGTNTSSPL-NQNECSRGISAIASIPAAEAELIEA-AETASCRPETTQVGAELSGEDGGRASCGGGGGLPAVTGEHVYAACQAGMAGLLNDLLVRSGGRAADGKDKLRRTPLHLAAEAGSLECVSLLLKQGTRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------XXXXXXXELLMTMANSNQAWKSSAPSSRDNSAPYSMVVMSGQASRARGNATGKRRALQSPMNPGSSNSARANGGKGNGVPVPALSPLHEAAASGQPETLSLLLQLGVSLEERDAAAGVGGDTPLGRAVRAGQIDCARILLDAGAMVGRENARXXXXXXXXXXXXXXXXXXXXXXXXAPLDGGKSNGRLTGADGRAPTGPREKMMARRRVEPLELALREGQLACAAALIEGGAHINERTLRAVKLQPS-GTEVTEDKSVAQGRQVIYAGTSPGESRRGGGWSGNGGAGSAGTPATTLPLQADILQRLSPEVPEISDSAPPDGGGLE---VDPEYDCDM--LDGVSVDIRETWRDKDLARREPSA-----------GGSKETAAEGEAATRPGRPVEYVGGLRPTLGECDIDLVLEDGSRLPAHSCLLAAFSGTFCDLFLRRHGRCSRRTCPAARGGNYSKRQPVPGASEVAAAAADGREMDQRTRSRDVHHLLAGHDPPGQGRSATSEHQRQTSPSISEAAVAAAAFAATATVENTAWWAPPVIDWGPGRGEVSVRFWGAGTMSAVVKHVYTGQPPSNMHADGLGRLLVASVSLRMNRLIRQVEHLLSDRLAPQKGKARSLQHAEAARLLRAARVLRATDLEKRCTLYMQANGVFPAVMKLRRELVVPSLNTLDVTRGLARLSNSGYLGSGPAYAWSSSGAVSTSSASATVAAAKLAVDLSLRKRAVDFDQLVPLLLDTVRFITWCTSTLSIGRQERAVLLTAALADAC---PQE--SPRSQNDAPDPLAAPQRRRPIPPNLRG----CCDAVRCDGDRWNADRPAVPLVSNVSAFSHGMGWLLRTGTVADVVLVLPEQPSHSDAMPPATVIEDGEEDEKNYSGNRENLSPGGRVGVQSSERGAHSADSAVDSPARVSPGGPVKDEGSGRPATDSRKMEGTTKDQLVNSRFLAHSMVLASRSEKFSAMLRFVQGQD-GNSRTYADSVDGSSTDDDIFTDADTPEREHRNREEPPWGDVEQGEAAGHNQGEAVDNIGKDGEV---SQPPRIDSRRPSPPSDRRCHCRRRPRRNTAPREMELHSPILTPQSLGLFLEFLYTGVLDTSLSTRELSELALIADEYLVPDLIRQAEALLVECLVRRGDVRYSLQVTASRNAGDYSFDSTTFN--GTTTVQSKREEDTESAPLELLQLGVSLALPDLSAAAARAVLLQLERVSRSEAFEQSSMSKRELVMAALEA 2066 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1317.2285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1317.2285.1 >prot_H-elongata_contig1317.2285.1 ID=prot_H-elongata_contig1317.2285.1|Name=mRNA_H-elongata_contig1317.2285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1603bp EIEEEFPALPFPSGCETQPKTLPPKPREESPRTVTDALDYASVAEKLVAGback to top mRNA from alignment at H-elongata_contig1317:2201..13327+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1317.2285.1 ID=mRNA_H-elongata_contig1317.2285.1|Name=mRNA_H-elongata_contig1317.2285.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=11127bp|location=Sequence derived from alignment at H-elongata_contig1317:2201..13327+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1317:2201..13327+ >mRNA_H-elongata_contig1317.2285.1 ID=mRNA_H-elongata_contig1317.2285.1|Name=mRNA_H-elongata_contig1317.2285.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=9618bp|location=Sequence derived from alignment at H-elongata_contig1317:2201..13327+ (Himanthalia elongata Himel1 dioecious)back to top |