mRNA_H-elongata_contig13163.2282.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig13163.2282.1 vs. uniprot
Match: D8LQ47_ECTSI (APPLE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ47_ECTSI) HSP 1 Score: 595 bits (1533), Expect = 8.010e-199 Identity = 294/445 (66.07%), Postives = 341/445 (76.63%), Query Frame = 3
Query: 975 MFG--IDPVRESLELQDCLIREPVPLIVGGTDGSGTRSVVALLQRLKVPMVVEDGGTMDVHGSPYMIKGGWPAVVRPVLDWTHGALYDPRDAPEKLRSSTITALGNLRRKMESSSGKLRKTDGSGAKHVIWGFKAPVSMILVPFFAEAWGKAKFLHVVRDGRDIAFSGNQTPVEKFYGETFPEGSRAREQTEGPLKAITMWNSWNVGLYEWAASREAYGATGLDYLLLHTEDLIDPAAKFAAIKDVAEFVGSPLSDKDLCCIATEASKDMGSHTTGRKERGKVTSRFGKWKGKVEGNPELSKRLHEGGERGLQLFGYKPERSVRASDGYQCPEEHDSSCPKFSTASGRQPVPRPMDVVRKN------TKVPERIEDTATCVGLDGDVDFKGFDLLVGNTEEHLECCQECLKAHSCTHFTFDYKNGNCYLKSAKGEVSPKKGLVSG 2285
MFG P+R SL Q LIREPVPLIVGG+DGSGTR VVALLQRLKVPMVVED GTMDVHG+PYM+KGGWPAVVRPV+ W GA Y+ R AP +LR T ALG L+ +M+ +GK R T G AKHV WGFKAPVSM+LVPFF EAWGKAKFLHVVRDGRDIAFSGNQTPVEKFY + FPEG+R E +KA+ +WNSWNVG++ WAASR+ GATGLDYLLLH EDLIDP AKFAAIKDVAEFVGSPLSD DLCCIATE SKDMGSHT +K+RGK+TSRFGKWK KVE PELSK+LH+ GERGL+ FGY+PERS+RAS G+QC E D +CPK +++ RP ++ + VP +EDTATCVGL ++DF GFD + ++HL CCQEC +A C+HFTFDY +G CYLK +G + K GLVSG
Sbjct: 1 MFGGLTPPLRPSLGSQPGLIREPVPLIVGGSDGSGTRGVVALLQRLKVPMVVEDRGTMDVHGAPYMVKGGWPAVVRPVIGWAKGAGYESRGAPAQLRRKTFDALGGLKVQMQKMAGKSRPTGGEAAKHVSWGFKAPVSMVLVPFFEEAWGKAKFLHVVRDGRDIAFSGNQTPVEKFYADMFPEGTRESGFKEPSVKAMALWNSWNVGVHHWAASRKERGATGLDYLLLHAEDLIDPEAKFAAIKDVAEFVGSPLSDFDLCCIATEGSKDMGSHTKSQKDRGKITSRFGKWKNKVEAKPELSKQLHDEGERGLRTFGYEPERSLRASSGFQCAAERDPTCPKPASSPQPSRSSRPKNLKAQAQVPAPIAPVPAAVEDTATCVGLKLNMDFNGFDSKAVHAQDHLGCCQECHQADGCSHFTFDYSSGVCYLKVGQGVQNFKVGLVSG 445
BLAST of mRNA_H-elongata_contig13163.2282.1 vs. uniprot
Match: A0A6H5L0U6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U6_9PHAE) HSP 1 Score: 437 bits (1123), Expect = 1.760e-140 Identity = 212/295 (71.86%), Postives = 238/295 (80.68%), Query Frame = 3
Query: 975 MFG--IDPVRESLELQDCLIREPVPLIVGGTDGSGTRSVVALLQRLKVPMVVEDGGTMDVHGSPYMIKGGWPAVVRPVLDWTHGALYDPRDAPEKLRSSTITALGNLRRKMESSSGKLRKTDGSGAKHVIWGFKAPVSMILVPFFAEAWGKAKFLHVVRDGRDIAFSGNQTPVEKFYGETFPEGSRAREQTEGPLKAITMWNSWNVGLYEWAASREAYGATGLDYLLLHTEDLIDPAAKFAAIKDVAEFVGSPLSDKDLCCIATEASKDMGSHTTGRKERGKVTSRFGKWKGKVE 1853
MFG P+R LE Q LIREPVPLIVGG+DGSGTR VVALLQ+LKVPMVVED GTMDVHG+PYM KGGWPAVV PV+ W G Y+ R AP +LR T ALG L+ +M+ +GK R G AK+V WGFKAPVSM+LVPFF EAWGKAKFLHVVRDGRDIAFSGNQTPVEKFY + FPEG+R E +KA+ +WNSWNVG++ WAASR+ GATGLDYLLLH EDLIDP AKFAAIKDVAEFVGSPLSD DLCCIATE SKDMGSHT +K+RGK+TSRFGKWK ++E
Sbjct: 1 MFGGLTSPLRPWLESQPGLIREPVPLIVGGSDGSGTRGVVALLQQLKVPMVVEDRGTMDVHGAPYMDKGGWPAVVSPVIGWAKGTGYESRSAPAQLRRKTFDALGGLKAQMQKMTGKSRSIGGEAAKYVSWGFKAPVSMVLVPFFEEAWGKAKFLHVVRDGRDIAFSGNQTPVEKFYADMFPEGTRESGFKEPSVKAMALWNSWNVGVHHWAASRKERGATGLDYLLLHAEDLIDPEAKFAAIKDVAEFVGSPLSDFDLCCIATEGSKDMGSHTKSQKDRGKITSRFGKWKARIE 295
BLAST of mRNA_H-elongata_contig13163.2282.1 vs. uniprot
Match: A0A482SCK3_9ARCH (APPLE domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCK3_9ARCH) HSP 1 Score: 255 bits (651), Expect = 7.410e-70 Identity = 162/453 (35.76%), Postives = 236/453 (52.10%), Query Frame = 3
Query: 1044 LIVGGTDGSGTRSVVALLQRLKVPMVVEDGGTMDVHGSPYMIKGGWPAVVRPVLDWTHGALYDPRDAPEKLRSSTITALGNLRRKMESSS-----------GKLRKTDGSGAKHVIWGFKAPVSMILVPFFAEAWGKAKFLHVVRDGRDIAFSGNQTPVEKFYGETFPEGSRAREQTEGPLKAITMWNSWNVGLYEWAAS--------REAYGATGLDYLLLHTEDLIDP--AAKFAAIKDVAEFVGSPLSDKDLCCIATEASKDMGSHTTGRKERGKVTSRFGKWKGKVEGNPELSKRLHEGGERGLQLFGYKPER--SVRASDG-----YQCPEEHDSSCPKFSTASGRQPVPRPMDVVRKNTKVPERIEDTATCVGLDGDVDFKGFDLLVGN-------TEEHLECCQECLKAHSCTHFTFDYKNGNCYLKSAKGEVSPKKGLVSGSVLV 2297
LIVGGTDGSGTR VV +L L V MV ED T D+H + GWP VV+PVL TH Y P D P+ + TI A+ + + + S G L + A + +GFKAPV+M L+P++ + KFLHV+RDGRDIAFS NQ PVEKFY + + + A + + ++AI +W+ WNVG+ +W+ + + G Y++LH+ED++ P ++ A+ +A +VGS +S +CC+A + S MGSH R + V+ R+GKW+G N L +L+ G+ GL+LFGY P R S DG Y+C ++ D RQ V +KN C+ G VDF G D+ + E + CC++C +C FT + CYLKS++ +V K+ L+SG+V+V
Sbjct: 127 LIVGGTDGSGTRRVVQVLTDLGVTMVSEDPETYDIHAD---LVSGWPPVVKPVLKHTHTLNYKPEDLPKHVNQQTIAAVRKITEQAQKDSTKPQSSRLAVGGALNIKTHAHASAIQYGFKAPVAMTLLPYWTSVLPRVKFLHVLRDGRDIAFSANQGPVEKFYEDMYAK--HAADVKDKRVQAIQLWSDWNVGILQWSLAYVQSLSNTNTSSSDKGYGYMMLHSEDIVSPDMQVRYEAMAKLAMYVGSDMSADRICCMAVKDSTFMGSHD--RSQHAVVSKRYGKWEGYTRNNKGLLDQLYGKGKEGLKLFGYDPLRTSSTLVEDGGGLLGYRCVKQTDDC---LDPEEKRQQEELVATVKQKN------------CMVQMG-VDFPGADISSVSMPETMLMVESAVFCCEQCKVNPACKFFTTAHSQHVCYLKSSQTDVVSKEQLISGAVVV 556
BLAST of mRNA_H-elongata_contig13163.2282.1 vs. uniprot
Match: A0A1Z5JYM4_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYM4_FISSO) HSP 1 Score: 186 bits (472), Expect = 3.320e-47 Identity = 107/273 (39.19%), Postives = 148/273 (54.21%), Query Frame = 3
Query: 1029 REPVPL-IVGGTDGSGTRSVVALLQRLKVPMVVEDGGTMDVHGSPYMIKGGWPAVVRPVLDWTHGALYDPRDAPEKLRSSTITALG----------NLRRKMESSSGKLRKTDGSGAKHVI-WGFKAPVSMILVPFFAEAWGKAKFLHVVRDGRDIAFSGNQTPVEKFYGETFPEGSRAREQTEGPL----------KAITMWNSWNVGLYEWAASREAYGATGLDYLLLHTEDLIDPAAKFAAIKDVAEFVGSPLSDKDLCCIATEASKDMG 1781
R +PL I+GG+DGSGTR+ V +L L VPM+V+D T+D+H + GWP +V V++ TH A Y+ D ++ + LR ME+ G H I +GFKAPVSM+L+P E + KFLHV+RDGRDIA S N +PV+KFY +P + L A+ +WN WN +YE+ S + +DYL + TEDL++P +F AI+ VAEFVGSPLS LCC++ + DMG
Sbjct: 6 RSKLPLLIIGGSDGSGTRAFVDVLGHLHVPMLVDDKATLDIHAPCFYHGDGWPHLVNRVMNETHSARYEFSDLSPSVQDELHEQMRICFREHYAPRALRLLMEAHK------KGKELPHRIRYGFKAPVSMLLLPVLLETFENIKFLHVIRDGRDIALSSNTSPVDKFYRTFYPNAAEQVTMLHEALGNDTVSVKQVMAMQLWNDWNTQVYEFGTSHPS-----IDYLPIKTEDLLNPVTRFEAIQQVAEFVGSPLSTAQLCCLSQKELHDMG 267
BLAST of mRNA_H-elongata_contig13163.2282.1 vs. uniprot
Match: A0A7S2TNP4_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TNP4_9EUKA) HSP 1 Score: 172 bits (436), Expect = 1.240e-41 Identity = 107/298 (35.91%), Postives = 150/298 (50.34%), Query Frame = 3
Query: 1026 IREPVPLIVGGTDGSGTRSVVALLQRLKVPMVVEDGGTMDVHGSPYMIKGGWPAVVRPVLDWTHGALYDPRDAPEKLRSSTITALGNLRRKMESSSGKLRKTDGSGAKHVIWGFKAPVSMILVPFFAEAWGKAKFLHVVRDGRDIAFSGNQTPVEKFYGETFPEGSRAREQTEGPLKAITMWNSWNVGLYEWAASREAYGATGLDYLLLHTEDLIDPAAKFAAIKDVAEFVGSPLSDKDLCCIATEASKDMGSHTTGRKERGKVTSRFGKWKGKVEGNPELSKRLHEGGERGLQLFGY 1919
I E P+IVGGTDGSGTR+VV LL L V MV +D T DVH GGWP VVR L ++HGA Y P D PE R+ +L KM+ + + + +H WGFKAP++ +L+PF E + F+ V+RDGRD+ FS NQ+PV+KFY + + + KAI MW+ N + + + + G YL + E+ ++ + E + +D+CC + SH V SR+GKW+ E N L L E G+ GL+ FGY
Sbjct: 224 ISEEPPIIVGGTDGSGTRAVVTLLSNLNVLMVKDDACTFDVHAGE---MGGWPPVVRRALRFSHGANYKPEDIPENDRAYLRRSLKRFADKMKKEAKRFSRMK----RHERWGFKAPIAQMLLPFLDEVFPGFSFVQVLRDGRDLPFSKNQSPVDKFYVTMYKGAKDSYLNLDPKFKAIRMWSDANTQVQTYMNTVQV--PKGSIYLRMKIENSVEEESLLQMGYVCNEKLKLGYKREDMCCRL----RGYISHLKKADFFRGVKSRYGKWEKITENNLPLRNGLQEHGKEGLEAFGY 508
BLAST of mRNA_H-elongata_contig13163.2282.1 vs. uniprot
Match: A0A7R9U6Q8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6Q8_9STRA) HSP 1 Score: 160 bits (404), Expect = 5.190e-38 Identity = 114/337 (33.83%), Postives = 165/337 (48.96%), Query Frame = 3
Query: 1044 LIVGGTDGSGTRSVVALLQRLKVPMVVEDGGTMDVHGSPYMIKGGWPAVVRPVLDWTH---GALYDPRDAPEKLRSSTITALGNLRRKMESSSGKLRKTDGSGAKHVIWGFKAPVSMILVPFFAEAWGKA----KFLHVVRDGRDIAFSGNQTPVEKFYGETFPEGSRAREQTEGPLKAITMWNSWNVGLYEWAASREA--------YGATG---------------------LDYLLLHTEDLIDPAAKFAAIKDVAEFVGSPLSDKDLCCIATEASKDMGSHTTGRKERGKVTSRFGKWKGKVE------GNPELSKRLHEGGERGLQLFGYKPE 1928
LIV GTDGSGTRS+V LL L V M+ E+ T DV + GGW +V+P+L T GA Y+ D PE +R+ + + ++ + G A WGFKAP+SM+ +P FA A + + LHV+RDGRD++FSGNQ+PV+K + P S +Q A+ +W+ NVG + +A A AT L YLL+ ED + K A ++ VA FVG+P + +C + + D+GSH + G + +RFGKWK K+ +SK + + R L++FGY PE
Sbjct: 141 LIVCGTDGSGTRSIVNLLAHLGVRMIDENRSTRDVEAWKGDL-GGWDKIVQPLLPHTAAGGGADYNVEDLPEDVRTQVVQWVNEF---LDLYTPAALSKGGVKAS---WGFKAPISMLTIPVFAHALAQRGQGLRVLHVLRDGRDLSFSGNQSPVQKLWHPLHPTTSA--KQFGAEAAALQLWDENNVGAWSFARRNAAKPGPVEVALSATEAIQVPPELAAASRMPSLKEAFLGYLLVRIEDFVFKDRKAALVQRVAAFVGAPTDKESVCRVVRLPATDLGSHGKVNRRAG-LAARFGKWKEKIGKISSEIARQAMSKSVRD--SRALKMFGYDPE 465
BLAST of mRNA_H-elongata_contig13163.2282.1 vs. uniprot
Match: A0A7S1FP45_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FP45_9STRA) HSP 1 Score: 159 bits (401), Expect = 4.500e-37 Identity = 116/420 (27.62%), Postives = 184/420 (43.81%), Query Frame = 3
Query: 1023 LIREPVPLIVGGTDGSGTRSVVALLQRLKVPMVVEDGGTMDVHGSPY---------MIKGGWPAVVRPVLDW---------THGALY-------------------------------------DPR------------DAPEKLRSSTITALGNLRRKMESSSGKLRKTD-----GSGAK-----------------HVIWGFKAPVSMILVPFFAEAWGKA----------------KFLHVVRDGRDIAFSGNQTPVEKFYGETFPEGSRAR---EQTEGPLKAITMWNSWNVGLYEWAASREAYGA---------TGLDYLLLHTEDLI--DPAAKFAAIKDVAEFVGSPLSDKDLCCIATEASKDMGSHTTGRKERGKVTSRFGKWKGKVEGNPELSKRLHEGGERGLQLFGYKP 1925
+++ P+PLIVGG+DGSGTRS+V++L L P + + T DV G+ ++ GWP +VR + + HG+L DPR +P++ R S + RR + S + R+ + S AK + +G KAP SM+++P + + + KF+HV+RDGRD+AFS NQ+PV KF+ PE + R E+ + A+ +WN +NV + W R+ + DY + ED + D + +F K +A +GSPL+D ++CC+A + +T ++ +V +GKWK K++ N +LSK LH+ G LQLFGY+P
Sbjct: 100 ILKSPIPLIVGGSDGSGTRSIVSILIDLCAPFLFQTESTFDVEGTEMTFNRSIESRILDVGWPGIVREGIKYGRGVVNYSLDHGSLKTSLVGVERMITAHERAVEVIETCMNETSKNFRCRRIPDPRIVGINKRQNIRRSSPDRRRRSAFRNQEHSRRLLSRKSFRERQHNXXXXXNSRAKIPRGLRYNFAIPKNRSMDISYGIKAPASMLMLPLLDQIYSSSGSGNGASDSNRNEKGFKFIHVLRDGRDVAFSKNQSPVNKFFDLVNPEANNMRLDAEEVPCEICAMQLWNDFNVQAHNWLKERKKRDKERDSTDPVKSRFDYATVRVEDTMSDDISVRFNTFKSLATLIGSPLTDDEICCVAKKERNIKIGNTAETIQKHEV---YGKWKKKIKSNTKLSKDLHDIGSEALQLFGYEP 516
BLAST of mRNA_H-elongata_contig13163.2282.1 vs. uniprot
Match: A0A7S1GKE0_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GKE0_CYCTE) HSP 1 Score: 146 bits (369), Expect = 2.720e-36 Identity = 75/204 (36.76%), Postives = 120/204 (58.82%), Query Frame = 3
Query: 1188 VVRPVLDWTHGALYDPRDAPEKLRSSTITALGNLRRKME----SSSGKLRKTDGSGAKHVIWGFKAPVSMILVPFFAEAWGKAKFLHVVRDGRDIAFSGNQTPVEKFYGETFPEGSRAREQTEGPL---KAITMWNSWNVGLYEWAASREAYGATGLDYLLLHTEDLIDPAAKFAAIKDVAEFVGSPLSDKDLCCIATEASKDM 1778
+ + VL TH A Y D L+ L+++++ ++ G+LR D + A+ V +GFKAP++M+LVP E G K+LH+VRDGRD+AFS NQ+PV+K Y + + + G L + + +WN WN L +W +E G D+L++ TEDL+DPA +F ++ +A FVGS +S +++CC++ A+ DM
Sbjct: 2 LAKAVLQETHSASYKFGDLSHFLQDGAKEEFQKLKKRIDFQKGAAYGRLRHNDVTPARWVEYGFKAPITMVLVPILREVLGPMKYLHIVRDGRDVAFSTNQSPVKKLYHTMYQDARLRSYKYSGNLSWVRGVHLWNDWNTQLLQW--EKENAGDR-FDFLVVRTEDLLDPAKRFDSLLQLAHFVGSSISTEEICCLSQSATVDM 202
BLAST of mRNA_H-elongata_contig13163.2282.1 vs. uniprot
Match: A0A1E7EYM7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EYM7_9STRA) HSP 1 Score: 146 bits (369), Expect = 1.570e-32 Identity = 125/496 (25.20%), Postives = 188/496 (37.90%), Query Frame = 3
Query: 1035 PVPLIVGGTDGSGTRSVVALLQR-LKVPMVVEDGGTMDVHGSPYMIKGGWPAVVRPVLDWTHG-----------------------------------------------------ALYDPRDAPEKLRSSTITAL---GNLRRKMES-------------SSGKLRKTDGS----------------------------GAKHVIWGFKAPVSMILVPFFAEA-------------------------WGKAKFLHVVRDGRDIAFSGNQTPVEKFYGETFPEGSRAREQTEG------PLKAITMWNSWNVGLYEWAASREAYGATGLDYLLLHTEDLI-----DPAAKFAAIKDVAEFVGSPLSDKDLCCIATEASKDMGSH--------------------------------------------------------TTGRKERGKVTSRFGKWKGKVEGNPELSKRLHEGGERGLQLFGYKPERSVRASDG 1952
P+ L+VGG+DGSGTR +V +L+ L V ++ED T+DVHG K GWP +V VL+ T+G A D + + ++T A N RR + S S+ +K + + A V + FKAPV+M+L+P F + K KF+HVVRDGRD+A S NQ+PV KFY T+P + R+ G ++A+ +WN WN+ WA +DYL++ TEDLI + K+ + ++ FVGSP S K+LCC+ + SKD G+ TT +T+R+GKW+ +E N LS+ ++ G GL++FGY P ++ ++G
Sbjct: 132 PIILLVGGSDGSGTRGMVDILKNELYVDFIIEDPATLDVHGQIMYDKRGWPELVLQVLNVTNGHIDYEFNTTNTNTSLFSFQKQQDIKKNIMKLLEYIQRRYIMGKERGLKMAVKKAFQDHMNMNKSNNANTNIANIANSNNRRTILSRTISIPTPIPNTLSNITTKKNNATINNXXXXXXMNAXXXXXXXXXXXXXXPYEASKVSYAFKAPVTMLLLPIFTSIIDTIFIENNNINNDDSDVDKSLLYQYPKVKFIHVVRDGRDVALSSNQSPVNKFYNATYPNDYKVRQALYGHDPDIQSVRAMQLWNDWNIQTRSWAIKNP----NKIDYLMIRTEDLIGSKSGNTKVKYDVLLALSNFVGSPRSRKELCCLTYKQSKDYGTSGNHVADGGGSFGXXXXXXXXXXXXXXXXXXXXXXXXPGMTRERPSFHQNQRRLSDATTAAGSSKDITTRYGKWQQVLENNTRLSEYFYKEGAEGLKIFGYHPYTEIQYNNG 623
BLAST of mRNA_H-elongata_contig13163.2282.1 vs. uniprot
Match: A0A7R9WRJ1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRJ1_9STRA) HSP 1 Score: 136 bits (343), Expect = 1.360e-31 Identity = 99/301 (32.89%), Postives = 149/301 (49.50%), Query Frame = 3
Query: 1038 VPLIVGGTDGSGTRSVVALLQRLKVPMVVEDGGTMDVHGSPYMIKGGWPAVVRPVLDWTHGAL------YDPRDAPEKLRSSTITALGNLRRKMESSSGKLRKTDGSGAKHVIWGFKAPVSMILVPFFAEAW-GKAKFLHVVRDGRDIAFSGNQTPVEKFYGETFPEGSRAREQTEGPLKAITMWNSWNVGLYEWAASREAYGATGLDYLLLHTEDLIDPAAKFAAIKDVAEFVGSPLSDKDLCCIATEASKDMGSHTTGRKERGKVTSRFGKWKGKVEGNPELSKRLHEGGERGLQLFGY 1919
VPL++ GTDGSGTR V A+LQ+L VP+VV+D +DVH + GGW +VR L +H + Y R+ P + T + + V + FKAP++M L+P + G+ K +HVVRDGRDIAFS NQ+PV K+Y E ++ ++ KA+ +WN WNV + W +YL++ +EDL+ P + A ++ +A FV +P + C E +RG +GKWK + + + L+ G+ GL+LFGY
Sbjct: 61 VPLVMVGTDGSGTRGVAAILQQLGVPLVVDDFVQLDVHAASI---GGWTPLVRSAL--SHKDIDAVLSQYLLRELPPRWDQQYAT-----------------HEHAAMSPTVSFAFKAPIAMTLIPQLRRIFDGRFKLVHVVRDGRDIAFSDNQSPVNKYY-----EVVHGKDGSDTHCKAMRLWNDWNVQAHRWMRDDP-------NYLVVRSEDLMSPR-RGAVLQRLARFVDAP----GVPCSLREVP-----------QRGS----YGKWKQLADAG--MLQELNRIGKEGLELFGY 305 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13163.2282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13163.2282.1 >prot_H-elongata_contig13163.2282.1 ID=prot_H-elongata_contig13163.2282.1|Name=mRNA_H-elongata_contig13163.2282.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=635bp MSPFFESRGTQRVKRGNQAASELFPNSAAKRQSGTSHKLHRRRGSSRDASback to top mRNA from alignment at H-elongata_contig13163:15..6779- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13163.2282.1 ID=mRNA_H-elongata_contig13163.2282.1|Name=mRNA_H-elongata_contig13163.2282.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6765bp|location=Sequence derived from alignment at H-elongata_contig13163:15..6779- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13163:15..6779- >mRNA_H-elongata_contig13163.2282.1 ID=mRNA_H-elongata_contig13163.2282.1|Name=mRNA_H-elongata_contig13163.2282.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3810bp|location=Sequence derived from alignment at H-elongata_contig13163:15..6779- (Himanthalia elongata Himel1 dioecious)back to top |