mRNA_H-elongata_contig131588.2280.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131588.2280.1
Unique NamemRNA_H-elongata_contig131588.2280.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131588.2280.1 vs. uniprot
Match: D8LBZ1_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ1_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 4.740e-89
Identity = 158/222 (71.17%), Postives = 171/222 (77.03%), Query Frame = 1 
Query:    1 DIVRLSPSQATGVLGLPENEHLNAFFSGFGACTQIVQEASDEIRGAMIHILSEGQFGMPDVEGKSFYSPPTPSPSC---PTKRAFGSGDQFANNDNPTDLPMIRLAGGGLGIPVGDPIEGSGSVDER---QRAQRARLSAGVACLWAGIGVGAMLCGHTAEATLHYAENAREAIKGCYDVVSEEVLRAFFCLAHMHSFREDFGKFSRYTAMAKNVAASLDRQ 648
            D+VRL+PS  TG LGL EN HLNAFFSGFG+CTQIVQE  DEIRGAMIH+LS+GQFGMP V+G+SFYSP T S S     T+R  G G++         L +IRL  GGLGI  G P    G   E+   QRAQRARLSAGVACLWAGIGVGAMLCG TAEAT  YAENAREAIKGCYDVVSEEVLRAF CLAHMHSFREDF KF RYTAMA +VAASLDRQ
Sbjct:  120 DVVRLTPSHGTGTLGLEENRHLNAFFSGFGSCTQIVQE--DEIRGAMIHVLSDGQFGMPSVDGESFYSPSTDSSSAGGTSTRRGIGVGEE-------PSLKLIRLEEGGLGIAAGTPAGAGGGESEKDLKQRAQRARLSAGVACLWAGIGVGAMLCGQTAEATSGYAENAREAIKGCYDVVSEEVLRAFLCLAHMHSFREDFTKFFRYTAMANDVAASLDRQ 332
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BLAST of mRNA_H-elongata_contig131588.2280.1 vs. uniprot
Match: A0A6H5JQB9_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQB9_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 1.190e-66
Identity = 128/179 (71.51%), Postives = 135/179 (75.42%), Query Frame = 1 
Query:  121 DEIRGAMIHILSEGQFGMPDVEGKSFYSPPTPSPSCPTKRAFGSGDQFANNDNPTDLPMIRLAGGGLGIPVGDPIEGSGSVDER---QRAQRARLSAGVACLWAGIGVGAMLCGHTAEATLHYAENAREAIKGCYDVVSEEVLRAFFCLAHMHSFREDFGKFSRYTAMAKNVAASLDRQ 648
            DEIRGAMIH+LS GQFGMP V+G+SFYSP T S S     + GSG       +   L +IRL  GGLGI  G P    G   ER   QRAQRARLSAGVACLWAGIGVGAMLCG TAEAT  YAENAREAIKGCYDVVSEEVLRAF CLAHMHSFREDF KF RYTAMA +VAASLDRQ
Sbjct:  105 DEIRGAMIHVLSYGQFGMPSVDGESFYSPSTDS-STAGGTSTGSGSGVGEEPS---LKLIRLKEGGLGIAAGTPAGADGGGSERDLKQRAQRARLSAGVACLWAGIGVGAMLCGQTAEATSGYAENAREAIKGCYDVVSEEVLRAFLCLAHMHSFREDFTKFFRYTAMANDVAASLDRQ 279
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131588.2280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBZ1_ECTSI4.740e-8971.17Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JQB9_9PHAE1.190e-6671.51Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131588contigH-elongata_contig131588:214..1562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-20_003830.1
Exons3
Model size648
Cds size648
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131588.2280.1prot_H-elongata_contig131588.2280.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131588 214..1562 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.784937-CDS-H-elongata_contig131588:213..3331622929781.784937-CDS-H-elongata_contig131588:213..333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131588 214..333 +
1691679155.3265243-CDS-H-elongata_contig131588:213..3331691679155.3265243-CDS-H-elongata_contig131588:213..333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131588 214..333 +
1622929781.805303-CDS-H-elongata_contig131588:690..11041622929781.805303-CDS-H-elongata_contig131588:690..1104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131588 691..1104 +
1691679155.334161-CDS-H-elongata_contig131588:690..11041691679155.334161-CDS-H-elongata_contig131588:690..1104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131588 691..1104 +
1622929781.8196552-CDS-H-elongata_contig131588:1448..15621622929781.8196552-CDS-H-elongata_contig131588:1448..1562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131588 1449..1562 +
1691679155.3451052-CDS-H-elongata_contig131588:1448..15621691679155.3451052-CDS-H-elongata_contig131588:1448..1562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131588 1449..1562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131588.2280.1

>prot_H-elongata_contig131588.2280.1 ID=prot_H-elongata_contig131588.2280.1|Name=mRNA_H-elongata_contig131588.2280.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=216bp
DIVRLSPSQATGVLGLPENEHLNAFFSGFGACTQIVQEASDEIRGAMIHI
LSEGQFGMPDVEGKSFYSPPTPSPSCPTKRAFGSGDQFANNDNPTDLPMI
RLAGGGLGIPVGDPIEGSGSVDERQRAQRARLSAGVACLWAGIGVGAMLC
GHTAEATLHYAENAREAIKGCYDVVSEEVLRAFFCLAHMHSFREDFGKFS
RYTAMAKNVAASLDRQ
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mRNA from alignment at H-elongata_contig131588:214..1562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131588.2280.1 ID=mRNA_H-elongata_contig131588.2280.1|Name=mRNA_H-elongata_contig131588.2280.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1349bp|location=Sequence derived from alignment at H-elongata_contig131588:214..1562+ (Himanthalia elongata Himel1 dioecious)
GATATAGTGAGGCTTTCCCCATCCCAGGCAACGGGGGTACTCGGTCTCCC
GGAGAACGAGCATCTGAACGCCTTCTTCAGTGGGTTTGGAGCGTGCACCC
AGATCGTGCAAGAGGCGAGTGTGCGCGGGGAGCGCTATCGCCGATGGTGG
TATCAATAGTCAAGGTCCCGCGGCACGACACGGCACGATAGTAGGTTTTG
TTTTATGCAGAGACTTTTTAAGACCACGACACGACACGATGAAGATTTTG
TGGATTACCTGTGTGCTGATGAGTGTGGTGGGGCTCAGCAGAGACATAGC
ATGAGGGAGGTTGAGGTAAACACCGGATGGGGAAGGTTATATGAACCGTG
ATGATCCTCGCTGATATATCTGATTGCGCATCCTATAGCCCGTCTACCTG
CGCCCTTCATCCTCCCTTCCCCTCCCATCCCCTCTCTATATCTCTCTCTA
TATATAAATATATCCCATCTACCGCAGGATGAGATCAGGGGAGCGATGAT
CCACATCCTGAGCGAGGGGCAATTCGGCATGCCGGACGTCGAGGGGAAGT
CCTTCTATTCACCTCCCACCCCGTCTCCATCGTGCCCTACCAAACGCGCC
TTTGGTAGTGGTGACCAATTTGCCAACAATGACAACCCGACGGACCTCCC
CATGATACGTCTCGCCGGGGGCGGCTTGGGCATCCCTGTCGGGGACCCTA
TTGAGGGTTCCGGCAGTGTGGACGAGAGGCAGCGAGCGCAGCGAGCGAGG
CTGTCGGCCGGAGTGGCATGTCTCTGGGCGGGGATCGGGGTCGGGGCGAT
GCTGTGCGGGCACACTGCGGAGGCCACCCTTCACTACGCGGAGAACGCCA
GAGAGGCGATCAAGGGATGCTACGACGTCGTCTCGGAGGAGGTGCGCGAG
ATAATACCCTGCACCCCACCCCCCCCCCTCTCCCCCTTCGTCCACACGTT
CGCGTCTTTTTATCTACCCTGTGAGGTTTCCCCTCTCTCGTCGAGCATCA
CGAGCTTCCTACCTCATACCTCTCTTACGGTAACGCGCCGGGCGTTTTTT
TAATATTTATCGAAACCAAAGCATTCCACACTACTTCGGCGACAAGGATA
CTATACCCCCCTCCCTACAAACACGCCGAAGAAATGCCTCCGTATGTGCT
GGGAGCTCGGCCTCACTCGCCTCGACTTGTTTCGATTTTCGTTTGTGTTT
TCCTCTCCGGGCCTCCGGGGTTTCCTAATGAACAGGTGCTTCGGGCGTTT
TTTTGTTTGGCGCACATGCATTCTTTTCGGGAGGACTTCGGCAAATTTTC
CCGTTACACCGCGATGGCCAAAAACGTGGCAGCTTCCCTCGACCGACAG
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Coding sequence (CDS) from alignment at H-elongata_contig131588:214..1562+

>mRNA_H-elongata_contig131588.2280.1 ID=mRNA_H-elongata_contig131588.2280.1|Name=mRNA_H-elongata_contig131588.2280.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1296bp|location=Sequence derived from alignment at H-elongata_contig131588:214..1562+ (Himanthalia elongata Himel1 dioecious)
GATATAGTGAGGCTTTCCCCATCCCAGGCAACGGGGGTACTCGGTCTCCC
GGAGAACGAGCATCTGAACGCCTTCTTCAGTGGGTTTGGAGCGTGCACCC
AGATCGTGCAAGAGGCGAGTGATATAGTGAGGCTTTCCCCATCCCAGGCA
ACGGGGGTACTCGGTCTCCCGGAGAACGAGCATCTGAACGCCTTCTTCAG
TGGGTTTGGAGCGTGCACCCAGATCGTGCAAGAGGCGAGTGATGAGATCA
GGGGAGCGATGATCCACATCCTGAGCGAGGGGCAATTCGGCATGCCGGAC
GTCGAGGGGAAGTCCTTCTATTCACCTCCCACCCCGTCTCCATCGTGCCC
TACCAAACGCGCCTTTGGTAGTGGTGACCAATTTGCCAACAATGACAACC
CGACGGACCTCCCCATGATACGTCTCGCCGGGGGCGGCTTGGGCATCCCT
GTCGGGGACCCTATTGAGGGTTCCGGCAGTGTGGACGAGAGGCAGCGAGC
GCAGCGAGCGAGGCTGTCGGCCGGAGTGGCATGTCTCTGGGCGGGGATCG
GGGTCGGGGCGATGCTGTGCGGGCACACTGCGGAGGCCACCCTTCACTAC
GCGGAGAACGCCAGAGAGGCGATCAAGGGATGCTACGACGTCGTCTCGGA
GGAGGATGAGATCAGGGGAGCGATGATCCACATCCTGAGCGAGGGGCAAT
TCGGCATGCCGGACGTCGAGGGGAAGTCCTTCTATTCACCTCCCACCCCG
TCTCCATCGTGCCCTACCAAACGCGCCTTTGGTAGTGGTGACCAATTTGC
CAACAATGACAACCCGACGGACCTCCCCATGATACGTCTCGCCGGGGGCG
GCTTGGGCATCCCTGTCGGGGACCCTATTGAGGGTTCCGGCAGTGTGGAC
GAGAGGCAGCGAGCGCAGCGAGCGAGGCTGTCGGCCGGAGTGGCATGTCT
CTGGGCGGGGATCGGGGTCGGGGCGATGCTGTGCGGGCACACTGCGGAGG
CCACCCTTCACTACGCGGAGAACGCCAGAGAGGCGATCAAGGGATGCTAC
GACGTCGTCTCGGAGGAGGTGCTTCGGGCGTTTTTTTGTTTGGCGCACAT
GCATTCTTTTCGGGAGGACTTCGGCAAATTTTCCCGTTACACCGCGATGG
CCAAAAACGTGGCAGCTTCCCTCGACCGACAGGTGCTTCGGGCGTTTTTT
TGTTTGGCGCACATGCATTCTTTTCGGGAGGACTTCGGCAAATTTTCCCG
TTACACCGCGATGGCCAAAAACGTGGCAGCTTCCCTCGACCGACAG
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