mRNA_H-elongata_contig131568.2279.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131568.2279.1
Unique NamemRNA_H-elongata_contig131568.2279.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131568.2279.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 8.960e-36
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 EPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFVTLLAFELMRPHLSQTDAWMYRVGCIVIFF 213
            EP N+YYETVECGRRCLLTGALVFVLPNTAGQ AGA +FAFV LL FEL+RPHLS TDAWMYR+GCI IFF
Sbjct: 1552 EPDNYYYETVECGRRCLLTGALVFVLPNTAGQAAGASVFAFVGLLGFELLRPHLSHTDAWMYRIGCITIFF 1622
[Close]
BLAST of mRNA_H-elongata_contig131568.2279.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 3.920e-27
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    4 PRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFVTLLAFELMRPHLSQTDAWMYRVGCIVIF 210
            P  +YYE VECGRR LLTG LVF+ PNTA Q+A AC+FAFV+LL FEL+RPHL   D+W+YR+GC+ IF
Sbjct: 1348 PEIYYYEVVECGRRILLTGVLVFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCLCIF 1416
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BLAST of mRNA_H-elongata_contig131568.2279.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 9.980e-27
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    4 PRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFVTLLAFELMRPHLSQTDAWMYRVGCIVIF 210
            P  +YYE VECGRR LLTG L+F+ PNTA Q+A AC+FAFV+LL FEL+RPHL   D+W+YR+GC+ IF
Sbjct: 1338 PDMYYYEVVECGRRILLTGVLIFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCMCIF 1406
[Close]
BLAST of mRNA_H-elongata_contig131568.2279.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.710e-26
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 EPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFVTLLAFELMRPHLSQTDAWMYRVGCIVIF 210
            +P  +YYE +ECGRR LLTGAL+F+ P+TA Q A AC+FAF +LL FEL+RPHL   D+W+YR+GC+ IF
Sbjct:  881 DPDMYYYEVIECGRRILLTGALIFIAPHTAAQAAMACMFAFASLLGFELLRPHLDPADSWLYRLGCVTIF 950
[Close]
BLAST of mRNA_H-elongata_contig131568.2279.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.200e-25
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    4 PRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFVTLLAFELMRPHLSQTDAWMYRVGCIVIF 210
            P  +YYE +ECGRR LLTGAL+F+ P+T  Q A AC+FAF +LL FEL+RPHL   D+W+YR+GC+VIF
Sbjct: 1428 PDMYYYEVIECGRRILLTGALIFIAPHTVAQAAIACMFAFASLLGFELLRPHLDPADSWLYRLGCVVIF 1496
[Close]
BLAST of mRNA_H-elongata_contig131568.2279.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.060e-25
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    4 PRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFVTLLAFELMRPHLSQTDAWMYRVGCIVIF 210
            P  +YYE +ECGRR LLTG L+F    TA Q A ACIFAFV+LL FEL+RPHL   DAW+YR+GC++IF
Sbjct: 1377 PDMYYYEVIECGRRILLTGVLIFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADAWLYRLGCVIIF 1445
[Close]
BLAST of mRNA_H-elongata_contig131568.2279.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.450e-24
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    4 PRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFVTLLAFELMRPHLSQTDAWMYRVGCIVIF 210
            P  +YYE +ECGRR LLTG L+F    TA Q A ACIFAFV+LL FEL+RPHL   D W+YR+GC++IF
Sbjct: 1035 PDMYYYEVIECGRRILLTGVLIFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADMWLYRLGCVIIF 1103
[Close]
BLAST of mRNA_H-elongata_contig131568.2279.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.280e-23
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    4 PRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFVTLLAFELMRPHLSQTDAWMYRVGCIVIFF 213
            P  +YYE  EC RR LLTG LVFV+P+T GQ+A  C+FAF++LLAFEL+RPH    D  +YR GC+VIFF
Sbjct: 1746 PNRYYYEVFECMRRLLLTGLLVFVVPDTPGQVAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFF 1815
[Close]
BLAST of mRNA_H-elongata_contig131568.2279.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 3.260e-23
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    4 PRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFVTLLAFELMRPHLSQTDAWMYRVGCIVIFF 213
            P  +YYE  EC RR LLTG LVF++P+T GQ+A  C+FAF++LLAFEL+RPH    D  +YR GC+VIFF
Sbjct: 1540 PNRYYYEVFECMRRLLLTGLLVFLVPDTPGQVAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFF 1609
[Close]
BLAST of mRNA_H-elongata_contig131568.2279.1 vs. uniprot
Match: A0A6H5JI42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI42_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.850e-22
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    4 PRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFVTLLAFELMRPHLSQTDAWMYRVGCIVIF 210
            P  +YYE +EC RR LLTG LVF++P+T GQ+A  C+FAF++LL FEL+RPH    D  +YR GC+VIF
Sbjct:  479 PSRYYYEVIECFRRLLLTGLLVFLVPDTPGQVAFGCVFAFLSLLVFELLRPHTDHLDMQLYRTGCLVIF 547
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131568.2279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTT7_ECTSI8.960e-3684.51Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FRH4_ECTSI3.920e-2766.67Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH3_ECTSI9.980e-2765.22Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JCK8_9PHAE4.710e-2661.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH0_ECTSI1.200e-2562.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JS31_9PHAE3.060e-2563.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH1_ECTSI1.450e-2462.32Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JRA9_9PHAE1.280e-2361.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0B0_ECTSI3.260e-2360.00Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JI42_9PHAE2.850e-2257.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131568contigH-elongata_contig131568:459..1180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue2.3e-12
Seed eggNOG ortholog2880.D8LRF9
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons3
Model size215
Cds size213
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131568.2279.1prot_H-elongata_contig131568.2279.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131568 459..1178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.698481-CDS-H-elongata_contig131568:458..5251622929781.698481-CDS-H-elongata_contig131568:458..525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131568 459..525 +
1691679155.284232-CDS-H-elongata_contig131568:458..5251691679155.284232-CDS-H-elongata_contig131568:458..525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131568 459..525 +
1622929781.7210686-CDS-H-elongata_contig131568:750..8751622929781.7210686-CDS-H-elongata_contig131568:750..875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131568 751..875 +
1691679155.2982998-CDS-H-elongata_contig131568:750..8751691679155.2982998-CDS-H-elongata_contig131568:750..875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131568 751..875 +
1622929781.7357254-CDS-H-elongata_contig131568:1157..11781622929781.7357254-CDS-H-elongata_contig131568:1157..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131568 1158..1178 +
1691679155.3127408-CDS-H-elongata_contig131568:1157..11781691679155.3127408-CDS-H-elongata_contig131568:1157..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131568 1158..1178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131568.2279.1

>prot_H-elongata_contig131568.2279.1 ID=prot_H-elongata_contig131568.2279.1|Name=mRNA_H-elongata_contig131568.2279.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
EPRNFYYETVECGRRCLLTGALVFVLPNTAGQMAGACIFAFVTLLAFELM
RPHLSQTDAWMYRVGCIVIFF
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mRNA from alignment at H-elongata_contig131568:459..1180+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131568.2279.1 ID=mRNA_H-elongata_contig131568.2279.1|Name=mRNA_H-elongata_contig131568.2279.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=722bp|location=Sequence derived from alignment at H-elongata_contig131568:459..1180+ (Himanthalia elongata Himel1 dioecious)
GAGCCTCGCAACTTCTACTACGAGACCGTGGAATGTGGCCGACGCTGCCT
GTTAACGGGAGCTCTAGGTAGGGGATCCTTTAATGCGTACTAAAGGCCGT
CAATATGGGGGACACGTGAGAAACCGCGGACTGCAGCACGTGAATCGCGC
CAAGGGCACATGCATATTCGCATCCGTTTGACTCGCCTCCCTTCCCCTCG
TCCCGTGTCGCCGCTACTAAGCTGAACCTCTAATTCACCGTGCTTTCTTT
GATGCTTCTCGTTGTCCCCTGGTATCTTCGCTTTCACCTCAGTTTTCGTA
CTCCCCAACACGGCCGGTCAAATGGCAGGAGCGTGCATCTTCGCCTTTGT
GACCCTACTAGCGTTCGAGCTCATGCGTCCCCATCTTTCCCAAACCGACG
CCTGGATGTACCGCGTGGTGAGCGCAACGGCTTACTCTACCTCATTGGAT
TCCCTTACCCTTTTCCTACGCCCCATCGTTTTACCGACAAAATTCCGTGT
GTACAACGCTTCCTTAACATTAGTACATTACCACTCTGACTTTGTATGCA
CATTTATATGGGAAATGATGCATTAATATATACCCTTCAAGTATACGTCC
TTTTCATCGTCTTCGATTCAGCAGTATACCTATTCCTCCCCAAACCGGAA
TGCTGATACCTGCTATCACGTGTGTTTGTTCTCGTCTTGCCGTGAGCAGG
GGTGCATTGTCATCTTCTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig131568:459..1180+

>mRNA_H-elongata_contig131568.2279.1 ID=mRNA_H-elongata_contig131568.2279.1|Name=mRNA_H-elongata_contig131568.2279.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig131568:459..1180+ (Himanthalia elongata Himel1 dioecious)
GAGCCTCGCAACTTCTACTACGAGACCGTGGAATGTGGCCGACGCTGCCT
GTTAACGGGAGCTCTAGGAGCCTCGCAACTTCTACTACGAGACCGTGGAA
TGTGGCCGACGCTGCCTGTTAACGGGAGCTCTAGTTTTCGTACTCCCCAA
CACGGCCGGTCAAATGGCAGGAGCGTGCATCTTCGCCTTTGTGACCCTAC
TAGCGTTCGAGCTCATGCGTCCCCATCTTTCCCAAACCGACGCCTGGATG
TACCGCGTGTTTTCGTACTCCCCAACACGGCCGGTCAAATGGCAGGAGCG
TGCATCTTCGCCTTTGTGACCCTACTAGCGTTCGAGCTCATGCGTCCCCA
TCTTTCCCAAACCGACGCCTGGATGTACCGCGTGGGGTGCATTGTCATCT
TCTTTGGGTGCATTGTCATCTTCTTT
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