mRNA_H-elongata_contig131536.2278.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131536.2278.1
Unique NamemRNA_H-elongata_contig131536.2278.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131536.2278.1 vs. uniprot
Match: A0A6H5JJG3_9PHAE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG3_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 5.690e-47
Identity = 83/127 (65.35%), Postives = 96/127 (75.59%), Query Frame = 1 
Query:   10 ACRILARPGKATVVAIRRPIV----GGVRRHASNLKPADQ--AYFLNLGPHYKREGWEEIMAVTGVASAAVLIIGLGFGPETSIKEWARDEALARNVREAKGLPLQYGKIYSQEPMFSFTPAGEDED 372
            A R+LAR G   V A RR        G RR ASNLKP DQ  AYFLNLGPHYK+EGWE IMA T VASA +LI G+G+GPET IKEWARDEALARNVRE +GLP++YGKIYSQ+P ++FT A  D++
Sbjct:    2 ASRMLARSG---VAAGRRVAATSASAGARRSASNLKPVDQNKAYFLNLGPHYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLPVEYGKIYSQQPRYTFTAAELDDE 125
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BLAST of mRNA_H-elongata_contig131536.2278.1 vs. uniprot
Match: A0A7S2SPP1_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SPP1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.060e-7
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:  127 LNLGPHYKREGWEEIMAVTGVASAAVLIIGLGFGPETSIKEWARDEALARNVREAKGLPLQYGKIYSQE 333
            L  G   KRE WE I   T V     L +GL + P TSI++WA+ EALAR +    G  ++ G+ Y+QE
Sbjct:   44 LGPGEKRKRESWELIYHGTMVGGLIFLAVGLYYKPNTSIRQWAKQEALARELIVEAGGEVELGRNYAQE 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131536.2278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJG3_9PHAE5.690e-4765.35NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A7S2SPP1_9STRA3.060e-742.03NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131536contigH-elongata_contig131536:365..1575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_004975.1
Exons2
Model size408
Cds size408
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.6075954-CDS-H-elongata_contig131536:364..4811622929781.6075954-CDS-H-elongata_contig131536:364..481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131536 365..481 +
1691679155.2619019-CDS-H-elongata_contig131536:364..4811691679155.2619019-CDS-H-elongata_contig131536:364..481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131536 365..481 +
1622929781.634512-CDS-H-elongata_contig131536:1284..15751622929781.634512-CDS-H-elongata_contig131536:1284..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131536 1285..1575 +
1691679155.274276-CDS-H-elongata_contig131536:1284..15751691679155.274276-CDS-H-elongata_contig131536:1284..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131536 1285..1575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131536.2278.1prot_H-elongata_contig131536.2278.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131536 365..1575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131536.2278.1

>prot_H-elongata_contig131536.2278.1 ID=prot_H-elongata_contig131536.2278.1|Name=mRNA_H-elongata_contig131536.2278.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MSTACRILARPGKATVVAIRRPIVGGVRRHASNLKPADQAYFLNLGPHYK
REGWEEIMAVTGVASAAVLIIGLGFGPETSIKEWARDEALARNVREAKGL
PLQYGKIYSQEPMFSFTPAGEDEDEEEEDEEDEED*
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mRNA from alignment at H-elongata_contig131536:365..1575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131536.2278.1 ID=mRNA_H-elongata_contig131536.2278.1|Name=mRNA_H-elongata_contig131536.2278.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1211bp|location=Sequence derived from alignment at H-elongata_contig131536:365..1575+ (Himanthalia elongata Himel1 dioecious)
ATGTCCACGGCGTGTAGGATTCTCGCTCGTCCGGGAAAAGCTACTGTGGT
AGCTATACGGAGACCGATAGTGGGTGGAGTACGGCGTCATGCATCAAATT
TGAAGCCGGCCGACCAGGTTAGAAATGCTTTGTAGGTTGGTATGATCTTC
TGGTGCTATATACCTGGTACAAAACCGTTTGCGAGAAGCAAGTGCCGCAG
CTTCTTAATGAATATAACACCCCCTCGTCCCTATTTTGCTCTTTTATGTC
GATCAGTTGACTGGAATGTTTCTCAGGCTCGAAGCCATAAGCATGGATGC
AGGCAACGGAAATTATGATGCGAATTTACTCTGTTTTGGCGGTCGTCCTT
TGCGGAAGTACCTCCCTCCTCCTTTCTTTAGTTTTCTTCCTTTTTAGTCA
GTCATATCATTTCACCAGAGACATCAAAATAGTAGAATACTTCAGTCCCT
ATGAGCCTACTGCTGTAGATATATTTCCTTGTGTGATTCCTTAGACTCTA
AACCTTTAGCCTCGACAACATGCGTTCGGGCAGCACCAGGCAAGAGCTAT
GAGATCAAACAGGGCCATTCCAAGCACCGTCATAATCCATGACAATCTTG
AGGTCGGATAATCGGTATATTATCGTCCATGTTGCCCGGTGCCCTTTCCT
CCTACTAATAAAGGGTTTCAACGTGTTATAAAAAGTGTATGAAAACAATG
CACTAAAGTGAAGAGGAACTTAAACCAGTCCGCCATGGACTAGTTTAGGT
TCCTGTCCACTTTAGTGCATGTTTTTTGTGCATTGTTTGTGACACGTGGA
AACCCTTTCTAATGGTATACCTTGTGTATCTTCCCTCTCATTTCCGTACT
GACTGCATTTACGGCGTTTACCGTCTAACGCTTGATTCATGTGGCATGAC
GTGTGACGTGGCAGAACAAGGCCTACTTCCTCAACTTGGGCCCTCATTAC
AAGAGAGAGGGCTGGGAGGAAATCATGGCCGTCACAGGGGTGGCGAGCGC
GGCCGTCCTCATCATCGGACTAGGCTTCGGACCAGAAACTAGTATCAAGG
AATGGGCTAGGGACGAGGCGCTAGCGAGAAACGTGCGGGAGGCGAAGGGG
CTGCCCCTCCAATATGGCAAGATCTACTCGCAGGAGCCCATGTTTAGCTT
TACACCCGCGGGAGAAGATGAGGATGAAGAAGAGGAAGATGAAGAGGACG
AAGAGGACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig131536:365..1575+

>mRNA_H-elongata_contig131536.2278.1 ID=mRNA_H-elongata_contig131536.2278.1|Name=mRNA_H-elongata_contig131536.2278.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig131536:365..1575+ (Himanthalia elongata Himel1 dioecious)
ATGTCCACGGCGTGTAGGATTCTCGCTCGTCCGGGAAAAGCTACTGTGGT
AGCTATACGGAGACCGATAGTGGGTGGAGTACGGCGTCATGCATCAAATT
TGAAGCCGGCCGACCAGATGTCCACGGCGTGTAGGATTCTCGCTCGTCCG
GGAAAAGCTACTGTGGTAGCTATACGGAGACCGATAGTGGGTGGAGTACG
GCGTCATGCATCAAATTTGAAGCCGGCCGACCAGGCCTACTTCCTCAACT
TGGGCCCTCATTACAAGAGAGAGGGCTGGGAGGAAATCATGGCCGTCACA
GGGGTGGCGAGCGCGGCCGTCCTCATCATCGGACTAGGCTTCGGACCAGA
AACTAGTATCAAGGAATGGGCTAGGGACGAGGCGCTAGCGAGAAACGTGC
GGGAGGCGAAGGGGCTGCCCCTCCAATATGGCAAGATCTACTCGCAGGAG
CCCATGTTTAGCTTTACACCCGCGGGAGAAGATGAGGATGAAGAAGAGGA
AGATGAAGAGGACGAAGAGGACTAAGCCTACTTCCTCAACTTGGGCCCTC
ATTACAAGAGAGAGGGCTGGGAGGAAATCATGGCCGTCACAGGGGTGGCG
AGCGCGGCCGTCCTCATCATCGGACTAGGCTTCGGACCAGAAACTAGTAT
CAAGGAATGGGCTAGGGACGAGGCGCTAGCGAGAAACGTGCGGGAGGCGA
AGGGGCTGCCCCTCCAATATGGCAAGATCTACTCGCAGGAGCCCATGTTT
AGCTTTACACCCGCGGGAGAAGATGAGGATGAAGAAGAGGAAGATGAAGA
GGACGAAGAGGACTAA
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