mRNA_H-elongata_contig131513.2276.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131513.2276.1
Unique NamemRNA_H-elongata_contig131513.2276.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig131513.2276.1 vs. uniprot
Match: D7G7L2_ECTSI (G-patch_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L2_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 4.680e-33
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 1
Query:    1 EGVKQRHLETVLPSRGGKVIVVRGREKGAAGKLLAKDKEAGTALVQVYEDLRAIRLSLDDVAEFTGMLDQDVEDLG 228
            EGVK+RHLETVLP+RGGKVIVVRG EKGA GKLLAK+KE  TALVQVYEDLRA+ LSLDDVAEFTGMLD+D+ED+G
Sbjct:  594 EGVKERHLETVLPARGGKVIVVRGAEKGATGKLLAKNKEKETALVQVYEDLRAVTLSLDDVAEFTGMLDEDMEDVG 669          
BLAST of mRNA_H-elongata_contig131513.2276.1 vs. uniprot
Match: A0A1E7FVK9_9STRA (KN17_SH3 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVK9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.750e-14
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    7 VKQRHLETVLPSRGGKVIVVRGREKGAAGKLLAKDKEAGTALVQVYEDLRAIRLSLDDVAEFTGMLDQDVE 219
            V +RHLET LP  GG  I++ G ++ + G+LL +D +    +VQV+ED+  I  SLD++AE+ G LD D+E
Sbjct:   50 VAERHLETALPKAGGNSIILSGDQRHSKGRLLERDSKKNRGVVQVFEDMSVITTSLDEMAEWCGPLDDDLE 120          
BLAST of mRNA_H-elongata_contig131513.2276.1 vs. uniprot
Match: A0A7S1D9L4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9L4_CYCTE)

HSP 1 Score: 70.9 bits (172), Expect = 1.450e-13
Identity = 30/70 (42.86%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    7 VKQRHLETVLPSRGGKVIVVRGREKGAAGKLLAKDKEAGTALVQVYEDLRAIRLSLDDVAEFTGMLDQDV 216
            V + +LET LP  GG  +++ G+ K A GKLL ++ ++G  ++Q++ED+  + LSLDD+AE+ G LD D+
Sbjct:   99 VPESYLETALPKVGGNAVILAGKSKLAKGKLLERNSDSGEGIIQIFEDMSVLSLSLDDLAEWVGPLDDDL 168          
BLAST of mRNA_H-elongata_contig131513.2276.1 vs. uniprot
Match: A0A7S3VCG7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCG7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.100e-13
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 EGVKQRHLETVLPSRGGKVIVVRGREKGAAGKLLAKDKEAGTALVQVYEDLRAIRLSLDDVAEFTGMLDQDVED 222
            E + +R+LET LP  GG VI++ G  K   GKLL +D E G  +VQ++ED+    LSLDD+AE+ G LD  + D
Sbjct:  566 ERIPERYLETALPKVGGNVIILTGSNKFEKGKLLERDSEKGRGVVQLFEDMHVKTLSLDDIAEYCGPLDDALAD 639          
BLAST of mRNA_H-elongata_contig131513.2276.1 vs. uniprot
Match: B8CB44_THAPS (G-patch_2 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB44_THAPS)

HSP 1 Score: 71.2 bits (173), Expect = 1.080e-12
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 EGVKQRHLETVLPSRGGKVIVVRGREKGAAGKLLAKDKEAGTALVQVYEDLRAIRLSLDDVAEFTGMLDQDVE 219
            + + +R+LET LP  GG VIV+ GR +   G+LL +    G+ +VQ++EDL  + +SLD VAE+ G +D D+E
Sbjct:  646 DNIPERYLETALPKTGGNVIVLEGRYRWKKGRLLERSSGDGSGVVQLFEDLEVVNISLDSVAEWCGPVDDDLE 718          
BLAST of mRNA_H-elongata_contig131513.2276.1 vs. uniprot
Match: A0A7S4ELZ5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ELZ5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.960e-12
Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   13 QRHLETVLPSRGGKVIVVRGREKGAAGKLLAKDKEAGTALVQVYEDLRAIRLSLDDVAEFTGMLDQDVE 219
            +RHLET LP  GG  I++ G ++ + G+LL +D +    +VQV+ED+  +  SLDD+AE+ G LD D+E
Sbjct:  485 ERHLETALPKAGGNAIILSGDQRFSKGQLLERDGKKNRGVVQVFEDMSIVTTSLDDMAEWCGPLDDDLE 553          
BLAST of mRNA_H-elongata_contig131513.2276.1 vs. uniprot
Match: A0A388K7G6_CHABU (G-patch domain-containing protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388K7G6_CHABU)

HSP 1 Score: 66.6 bits (161), Expect = 4.570e-11
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 EGVKQRHLETVLPSRGGKVIVVRGREKGAAGKLLAKDKEAGTALVQVYEDLRAIRLSLDDVAE 189
            +GV +  LETVLP RGG+V++V G  +G  G+L+ K+ + G ALVQ++EDL  +++ LDDV E
Sbjct:  581 QGVDESSLETVLPKRGGRVLIVSGXLRGQXGRLMDKNLDKGWALVQLHEDLAHVQVHLDDVXE 643          
BLAST of mRNA_H-elongata_contig131513.2276.1 vs. uniprot
Match: A0A7R9Y0J3_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y0J3_9VIRI)

HSP 1 Score: 63.9 bits (154), Expect = 9.400e-11
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    7 VKQRHLETVLPSRGGKVIVVRGREKGAAGKLLAKDKEAGTALVQVYEDLRAIRLSLDDVAEFTG 198
            V QR LET LP RGG+VIVV+G  +G   +L+ +  ++G A VQ+ +DL    L +D+VAE+ G
Sbjct:  124 VPQRSLETALPKRGGRVIVVKGEHRGEVAQLIERHSDSGEATVQLSDDLSMRTLMMDEVAEYRG 187          
BLAST of mRNA_H-elongata_contig131513.2276.1 vs. uniprot
Match: W7T0X8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0X8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.430e-10
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    4 GVKQRHLETVLPSRGGKVIVVRGREKGAAGKLLAKDKEAGTALVQVYED-LRAIRLSLDDVAEFTG 198
            G+  R+LET+LPS GG V+++RG  +   GKLL  D+    A+VQ+ ED L+ +RLSLDDVA + G
Sbjct:   39 GLPARYLETLLPSTGGLVLLLRGPHRLQRGKLLEVDRRREEAIVQLIEDDLQVLRLSLDDVAGYGG 104          
BLAST of mRNA_H-elongata_contig131513.2276.1 vs. uniprot
Match: A0A0K9PGU6_ZOSMR (G patch domain and KOW motifs-containing protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PGU6_ZOSMR)

HSP 1 Score: 64.7 bits (156), Expect = 2.120e-10
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 EGVKQRHLETVLPSRGGKVIVVRGREKGAAGKLLAKDKEAGTALVQVYEDLRAIRLSLDDVAEFTGMLDQDVEDL 225
            +G+ Q+ LETVLP RGG V+V+ GR KG  G+L+ KD+E  TA V+  E+    ++ ++ +AE+ G    D  DL
Sbjct:  373 QGIHQKSLETVLPHRGGPVVVLYGRYKGVYGRLMEKDRENETATVRDVENHTMFKVRMEQIAEYVGSDPSDEIDL 447          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131513.2276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7L2_ECTSI4.680e-3384.21G-patch_2 domain-containing protein n=2 Tax=Ectoca... [more]
A0A1E7FVK9_9STRA9.750e-1445.07KN17_SH3 domain-containing protein n=1 Tax=Fragila... [more]
A0A7S1D9L4_CYCTE1.450e-1342.86Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3VCG7_9STRA3.100e-1347.30Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B8CB44_THAPS1.080e-1243.84G-patch_2 domain-containing protein n=1 Tax=Thalas... [more]
A0A7S4ELZ5_9STRA6.960e-1244.93Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A388K7G6_CHABU4.570e-1149.21G-patch domain-containing protein n=2 Tax=Chara br... [more]
A0A7R9Y0J3_9VIRI9.400e-1146.88Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
W7T0X8_9STRA1.430e-1050.00Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A0K9PGU6_ZOSMR2.120e-1042.67G patch domain and KOW motifs-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131513contigH-elongata_contig131513:533..1307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue7.1e-28
Seed eggNOG ortholog2880.D7G7L2
Preferred nameGPKOW
KEGG rclassRC00010
KEGG koko:K10798,ko:K13101,ko:K13566
KEGG ReactionR00269,R00348
KEGG Pathwayko00250,ko03410,ko04210,ko04212,ko04214,ko04217,map00250,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
GOsGO:0000375,GO:0000377,GO:0000398,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009870,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.defense response signaling pathway, resistance gene-dependent
EggNOG OGsKOG4315@1,KOG4315@2759
EC2.4.2.30,3.5.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.4500844-CDS-H-elongata_contig131513:532..6701622929781.4500844-CDS-H-elongata_contig131513:532..670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131513 533..670 +
1691679155.204777-CDS-H-elongata_contig131513:532..6701691679155.204777-CDS-H-elongata_contig131513:532..670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131513 533..670 +
1622929781.469779-CDS-H-elongata_contig131513:1214..13071622929781.469779-CDS-H-elongata_contig131513:1214..1307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131513 1215..1307 +
1691679155.2177098-CDS-H-elongata_contig131513:1214..13071691679155.2177098-CDS-H-elongata_contig131513:1214..1307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131513 1215..1307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131513.2276.1prot_H-elongata_contig131513.2276.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131513 533..1307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131513.2276.1

>prot_H-elongata_contig131513.2276.1 ID=prot_H-elongata_contig131513.2276.1|Name=mRNA_H-elongata_contig131513.2276.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
EGVKQRHLETVLPSRGGKVIVVRGREKGAAGKLLAKDKEAGTALVQVYED
LRAIRLSLDDVAEFTGMLDQDVEDLG*
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mRNA from alignment at H-elongata_contig131513:533..1307+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131513.2276.1 ID=mRNA_H-elongata_contig131513.2276.1|Name=mRNA_H-elongata_contig131513.2276.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=775bp|location=Sequence derived from alignment at H-elongata_contig131513:533..1307+ (Himanthalia elongata Himel1 dioecious)
GAAGGCGTAAAGCAACGGCACCTGGAGACGGTACTGCCGTCGAGAGGCGG AAAGGTGATTGTCGTCCGCGGCCGGGAGAAGGGGGCGGCGGGGAAGCTTC TGGCGAAGGATAAGGAGGCCGGGACTGCCCTCGTGCAGGTAGGACGCGGG GCATATGGCGCGGCGGTACCCACAAGCACTTCGCGTTCCAAGTGTTCGCA TAATGTTTTCCGATTCTTTTTATAATAACGTCAGGAGGCGGGCGCACTTC GCTATCGTGTTGGTGATAAAAAAATCAAACACCACGGCGGCCGCAATGTC TGCGTAGAGAGTCTATTTAGGTATTTGATGCCTCGAGCACCGCGAAAAAT CAATAAGCAGAACAAGCGAAGACAATTCGGATCAATAGCGCTGTGACAAC TCGGTTGGTTGGCACCGAGGCTCGCGGGGGACGAGCATAATCGCCGAAAT CGGGCGTTTTTACTTGCCAGGCGCCAGCTCGCTCCCGTCTTTGATATGGG AATCTCCCGTCGCGTTCATTTCCCAATGAATTAGAGCACATCCCGCCCAT CCTCTACCACCCCACCCGGGCGGTTGCTCAAAATACGGTGATTATTATAT CATTGATTTGAAAACCGTTGGTAATTTTTTGCCCCACTCCCCCTCCTTCT GCCGATTCTCTGCTGCGGTTTGGGCTTTACAGGTATACGAAGATCTCCGC GCGATACGATTGTCGCTGGACGACGTGGCGGAATTCACGGGCATGCTCGA TCAGGACGTCGAGGATTTGGGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig131513:533..1307+

>mRNA_H-elongata_contig131513.2276.1 ID=mRNA_H-elongata_contig131513.2276.1|Name=mRNA_H-elongata_contig131513.2276.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig131513:533..1307+ (Himanthalia elongata Himel1 dioecious)
GAAGGCGTAAAGCAACGGCACCTGGAGACGGTACTGCCGTCGAGAGGCGG
AAAGGTGATTGTCGTCCGCGGCCGGGAGAAGGGGGCGGCGGGGAAGCTTC
TGGCGAAGGATAAGGAGGCCGGGACTGCCCTCGTGCAGGAAGGCGTAAAG
CAACGGCACCTGGAGACGGTACTGCCGTCGAGAGGCGGAAAGGTGATTGT
CGTCCGCGGCCGGGAGAAGGGGGCGGCGGGGAAGCTTCTGGCGAAGGATA
AGGAGGCCGGGACTGCCCTCGTGCAGGTATACGAAGATCTCCGCGCGATA
CGATTGTCGCTGGACGACGTGGCGGAATTCACGGGCATGCTCGATCAGGA
CGTCGAGGATTTGGGCTAGGTATACGAAGATCTCCGCGCGATACGATTGT
CGCTGGACGACGTGGCGGAATTCACGGGCATGCTCGATCAGGACGTCGAG
GATTTGGGCTAG
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