prot_H-elongata_contig13148.2272.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13148.2272.1
Unique Nameprot_H-elongata_contig13148.2272.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length211
Homology
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: D7G466_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G466_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 3.880e-99
Identity = 148/209 (70.81%), Postives = 174/209 (83.25%), Query Frame = 0
Query:    1 MSDSDLMGRPILVREYVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 209
            +S+++LMGRPI VRE  GD GN G GVGG AGA+V+VGNL+W  QWQDLKD+MR AG+VK VDLFQEPGGRSKGCAVVEYETPQ AH+AIR+LHDTEL GR++FVREDREEG   SK +G +   H GAEGRQV+V N+SWE+GWQ LKDHF+Q G VQFVEIPED QGRS+G+ATVRF SEQ A  AI++L+ T+L GRRI VR DN+
Sbjct:  230 LSETELMGRPIQVREERGDAGNHGRGVGGAAGAKVYVGNLSWECQWQDLKDHMRAAGSVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPIGSKRIGQL---HEGAEGRQVHVSNVSWETGWQSLKDHFKQCGRVQFVEIPEDAQGRSKGYATVRFGSEQDAADAINQLDGTDLDGRRIGVREDNR 435          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: L1ITL9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ITL9_GUITC)

HSP 1 Score: 189 bits (481), Expect = 6.360e-58
Identity = 99/186 (53.23%), Postives = 122/186 (65.59%), Query Frame = 0
Query:   28 GGGAGARVFVGNLAWGVQWQDLKDYMR---QAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQL 210
            G G G RV+VGNL+W  QWQDLKD+MR   Q  NV   D+  E GGRSKGCA+VEY +P+ A  AI  L+DTE+ GR++FVREDRE         G MG+      GR+VYVGNLSWE  WQDLKDH R  G+V   ++     GRS+G   V F+S + A RAI ELN+TEL GR I+VR D ++
Sbjct:    7 GPGLGCRVYVGNLSWDAQWQDLKDHMRGPNQNLNVVHADIMYEAGGRSKGCAIVEYASPEDAQRAIAELNDTEMMGRLIFVREDRE------GFKGGMGTG-----GRRVYVGNLSWECKWQDLKDHMRTAGNVLHADVMTGPDGRSKGCGLVEFSSPEEAVRAIQELNETELMGRMIFVREDREM 181          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: I2CPF4_NANGC (Rnp domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPF4_NANGC)

HSP 1 Score: 188 bits (477), Expect = 3.640e-57
Identity = 100/196 (51.02%), Postives = 125/196 (63.78%), Query Frame = 0
Query:   29 GGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMG-------SRH-------PGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQL 210
            GG G RV+VGNL++ V WQDLKD+MR+ GNV   D+ ++  GRSKGC +VEY+ P GA  AIR L++T+L GR++FVREDRE+     K  GPMG       S H       P A GRQ+YVGNL +E  WQ LKDHF+    VQ  E+  D +GRSRG  TVRF +   A RA + LN T L  R I VR DN++
Sbjct:    2 GGVGTRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHEGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDRED----KKMGGPMGGGFQGGASMHRVGVGGPPSAAGRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDAEGRSRGFGTVRFGTAAEAQRAQEALNGTNLNNRTIEVREDNRV 192          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A3R7H492_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H492_9STRA)

HSP 1 Score: 189 bits (479), Expect = 3.020e-55
Identity = 94/179 (52.51%), Postives = 122/179 (68.16%), Query Frame = 0
Query:   32 GARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDRE-EGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 209
            G RV+VGNL W V+WQ+LKD+M+QAG V   D+ +E GGRSKGC +VEY T + A+ AI  L++TEL GR++FVREDRE EG + SK      +   G EGRQ+YVGNL W++ WQ LKD FR VG V+  +I E   GRSRG   +R+A+   A +AI+ LN  E+ GR I VR D +
Sbjct:  192 GFRVYVGNLPWNVKWQELKDHMKQAGTVVHADVLEEAGGRSKGCGLVEYATEEEANNAIAQLNNTELEGRLIFVREDREPEGGSISKFAKRTAAPRNGGEGRQLYVGNLPWDTNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYANPAHAFQAIERLNGLEIEGRLIEVRLDKK 370          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A8K1CTK2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTK2_PYTOL)

HSP 1 Score: 186 bits (473), Expect = 1.900e-54
Identity = 100/200 (50.00%), Postives = 127/200 (63.50%), Query Frame = 0
Query:   10 PILVREYVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 209
            P   R  VG+    G G  GGAG RV+VGNL+W V+WQDLKD+MR AG V+R  +  E  GRSKGC +V Y T   AH AI  L+DTEL+GR +FVREDREE +       P  +R    +G +VYVGNLSW   WQDLKDH +  G+V   ++ E+  GRS+G   V +++   A  AI  LNDTEL GR+I+VR D +
Sbjct:   49 PRNARYGVGETPGNGEGGDGGAGRRVYVGNLSWNVKWQDLKDHMRAAGEVERASIM-ESNGRSKGCGLVTYVTEVDAHRAIETLNDTELDGRKIFVREDREEST-------PNWTR--ATKGCRVYVGNLSWNVKWQDLKDHMKLAGTVVHADVLEEPNGRSKGCGLVEYSTPDEAQHAIMSLNDTELEGRKIFVREDRE 238          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A7S2KX18_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KX18_9STRA)

HSP 1 Score: 190 bits (482), Expect = 2.250e-54
Identity = 91/176 (51.70%), Postives = 117/176 (66.48%), Query Frame = 0
Query:   34 RVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 209
            R++VGNL+W V W++LKD+M+ AG+V R D+ Q P GRSKGC +VE+ T + A  A+  L+D+EL GR +FVREDRE   AA             A  ++VYVGNL++E  WQDLKDH R  G VQF E+     GRS+G   V FA E+GA  AID LNDTEL GR+I+VR D +
Sbjct:   91 RLYVGNLSWSVSWRELKDHMKSAGDVTRADILQTPDGRSKGCGIVEFATAEEASNAVETLNDSELMGRQIFVREDREAEKAAD------------ASSKRVYVGNLAYEVAWQDLKDHMRDAGEVQFAEVMMMNDGRSKGCGIVEFADEEGAQNAIDTLNDTELCGRQIFVREDRE 254          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: B8CBN8_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBN8_THAPS)

HSP 1 Score: 178 bits (452), Expect = 1.960e-53
Identity = 87/188 (46.28%), Postives = 119/188 (63.30%), Query Frame = 0
Query:   34 RVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRH------------PGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 209
            RV+VGNL+W   W+DLKD+M+  G+V R D+ Q   GRSKGC +VEY +P+ A  A+  L+++EL+GR +FVREDRE+ + ++   G  G  +            P  EG Q++VGNLSWE+GW++LKDHFRQ G V   E+ E   GR RG   VRF S + A  AI +LN  +  GR + VR DN+
Sbjct:    1 RVYVGNLSWSTGWRDLKDHMKACGDVLRADIMQTHDGRSKGCGIVEYSSPEEAARAVEELNNSELSGRQIFVREDREQTTGSNNRHGGGGFNNQRSHNTSYMQGSPAEEGCQLFVGNLSWETGWRELKDHFRQCGEVDRAEVAEGNDGRKRGFGLVRFHSAKDAQAAIRKLNGVDFMGRPLDVRVDNK 188          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: H3GHR3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHR3_PHYRM)

HSP 1 Score: 182 bits (462), Expect = 5.020e-53
Identity = 100/215 (46.51%), Postives = 133/215 (61.86%), Query Frame = 0
Query:    1 MSDSDLMGRPILVREY-----VGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDRE-EGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 209
            ++DS+L GR I VRE      +         V    G RV+VGNL+W V+WQ+LKD+M++AG V   D+ +E  GRSKGC +VEY T   A+ AI  L+++EL GR++FVREDRE EG + SK      +     EGRQ+YVGNL WE+ WQ LKD FR VG V+  +I E   GRSRG   +R+ +   A +AI+ LN  E+ GR I VR D +
Sbjct:  134 LNDSELGGRKIFVREDRETQPIAA-------VKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLEESNGRSKGCGLVEYATQDEANKAIAELNNSELEGRLIFVREDREPEGGSISKLAKRAAAPRGNGEGRQLYVGNLPWETNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 341          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A2D4CCJ1_PYTIN (RNA binding protein putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCJ1_PYTIN)

HSP 1 Score: 182 bits (463), Expect = 5.230e-53
Identity = 96/196 (48.98%), Postives = 125/196 (63.78%), Query Frame = 0
Query:   31 AGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASK-SMGPMG--------------SRHPGAE--GRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 209
            +G RV+VGNLAW VQWQDLKDYMR AG V+RV L ++  GRSKGCAVV + T   A  AI  L+DTE +GR +FVREDR+  S ++  +  P G                 P A   GR+V+VGNLSW   WQDLKD+F++ G V   ++ E+  GRSRG   V F++ + A +AI  L+D+EL GRRI+VR D +
Sbjct:   21 SGRRVYVGNLAWAVQWQDLKDYMRSAGEVERVVLMEDHAGRSKGCAVVTFVTEADAQRAIHTLNDTEFHGRXLFVREDRDPQSGSNTGAWNPPGPPLAPLLPPPHSVQDAGPPAPTLGRRVFVGNLSWNIKWQDLKDYFKKAGRVLHADVMEEAGGRSRGFGLVEFSTAEEAQQAIAMLHDSELDGRRIFVREDRE 216          
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A0P1AA48_PLAHL (Rna-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AA48_PLAHL)

HSP 1 Score: 182 bits (461), Expect = 7.080e-53
Identity = 100/216 (46.30%), Postives = 137/216 (63.43%), Query Frame = 0
Query:    1 MSDSDLMGRPILVRE-----YVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDRE-EGSAASKSMGPMGSRHPG-AEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 209
            ++D++L GR I VRE     +V  G           G RV+VGNL+W V+WQ+LKD+M++AG V   D+ +   GRSKGC +VEY TP+ A  AI  L++TEL+GR++FVREDRE EG + SK      +   G  EGRQ+YVGNL W++ WQ LKD FR VG V+  +I E   GRSRG   +R+ +   A +AI+ +N  E+ GR+I VR D +
Sbjct:  133 LNDTELGGRKIFVREDRESQFVAAGKPK-------RGFRVYVGNLSWTVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYSTPEEAATAIAELNNTELDGRLIFVREDREPEGGSISKFAKRSNAPSRGNGEGRQLYVGNLPWDTNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYTTAADAWQAIERMNGMEVEGRQIEVRLDKK 341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G466_ECTSI3.880e-9970.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
L1ITL9_GUITC6.360e-5853.23Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
I2CPF4_NANGC3.640e-5751.02Rnp domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A3R7H492_9STRA3.020e-5552.51Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A8K1CTK2_PYTOL1.900e-5450.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2KX18_9STRA2.250e-5451.70Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8CBN8_THAPS1.960e-5346.28Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
H3GHR3_PHYRM5.020e-5346.51Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A2D4CCJ1_PYTIN5.230e-5348.98RNA binding protein putative (Fragment) n=1 Tax=Py... [more]
A0A0P1AA48_PLAHL7.080e-5346.30Rna-binding protein n=1 Tax=Plasmopara halstedii T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 34..106
e-value: 7.9E-22
score: 88.5
coord: 133..205
e-value: 1.1E-21
score: 88.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 134..202
e-value: 8.1E-19
score: 67.2
coord: 35..101
e-value: 6.6E-18
score: 64.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 33..110
score: 15.528
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 132..209
score: 17.353
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 128..209
e-value: 4.7E-24
score: 86.2
coord: 31..113
e-value: 6.6E-24
score: 85.8
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 1..208
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 128..207
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 33..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13148contigH-elongata_contig13148:5664..7470 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13148.2272.1mRNA_H-elongata_contig13148.2272.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13148 5624..7924 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13148.2272.1 ID=prot_H-elongata_contig13148.2272.1|Name=mRNA_H-elongata_contig13148.2272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=211bp
MSDSDLMGRPILVREYVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLK
DYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNG
RMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKD
HFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGR
RIYVRHDNQL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf