mRNA_H-elongata_contig13148.2272.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: D7G466_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G466_ECTSI) HSP 1 Score: 317 bits (811), Expect = 8.710e-102 Identity = 155/217 (71.43%), Postives = 182/217 (83.87%), Query Frame = 2
Query: 17 QARNAISQMSDSDLMGRPILVREYVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 667
+ARNAISQ+S+++LMGRPI VRE GD GN G GVGG AGA+V+VGNL+W QWQDLKD+MR AG+VK VDLFQEPGGRSKGCAVVEYETPQ AH+AIR+LHDTEL GR++FVREDREEG SK +G + H GAEGRQV+V N+SWE+GWQ LKDHF+Q G VQFVEIPED QGRS+G+ATVRF SEQ A AI++L+ T+L GRRI VR DN+
Sbjct: 222 EARNAISQLSETELMGRPIQVREERGDAGNHGRGVGGAAGAKVYVGNLSWECQWQDLKDHMRAAGSVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPIGSKRIGQL---HEGAEGRQVHVSNVSWETGWQSLKDHFKQCGRVQFVEIPEDAQGRSKGYATVRFGSEQDAADAINQLDGTDLDGRRIGVREDNR 435
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: L1ITL9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ITL9_GUITC) HSP 1 Score: 189 bits (481), Expect = 1.200e-55 Identity = 99/186 (53.23%), Postives = 122/186 (65.59%), Query Frame = 2
Query: 122 GGGAGARVFVGNLAWGVQWQDLKDYMR---QAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQL 670
G G G RV+VGNL+W QWQDLKD+MR Q NV D+ E GGRSKGCA+VEY +P+ A AI L+DTE+ GR++FVREDRE G MG+ GR+VYVGNLSWE WQDLKDH R G+V ++ GRS+G V F+S + A RAI ELN+TEL GR I+VR D ++
Sbjct: 7 GPGLGCRVYVGNLSWDAQWQDLKDHMRGPNQNLNVVHADIMYEAGGRSKGCAIVEYASPEDAQRAIAELNDTEMMGRLIFVREDRE------GFKGGMGTG-----GRRVYVGNLSWECKWQDLKDHMRTAGNVLHADVMTGPDGRSKGCGLVEFSSPEEAVRAIQELNETELMGRMIFVREDREM 181
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: I2CPF4_NANGC (Rnp domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPF4_NANGC) HSP 1 Score: 188 bits (477), Expect = 6.730e-55 Identity = 100/196 (51.02%), Postives = 125/196 (63.78%), Query Frame = 2
Query: 125 GGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMG-------SRH-------PGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQL 670
GG G RV+VGNL++ V WQDLKD+MR+ GNV D+ ++ GRSKGC +VEY+ P GA AIR L++T+L GR++FVREDRE+ K GPMG S H P A GRQ+YVGNL +E WQ LKDHF+ VQ E+ D +GRSRG TVRF + A RA + LN T L R I VR DN++
Sbjct: 2 GGVGTRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHEGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDRED----KKMGGPMGGGFQGGASMHRVGVGGPPSAAGRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDAEGRSRGFGTVRFGTAAEAQRAQEALNGTNLNNRTIEVREDNRV 192
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A3R7H492_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H492_9STRA) HSP 1 Score: 192 bits (489), Expect = 1.880e-54 Identity = 106/222 (47.75%), Postives = 140/222 (63.06%), Query Frame = 2
Query: 20 ARNAISQMSDSDLMGRPILVRE-----YVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDRE-EGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 667
A+NAI+ ++D++L R I VRE V G RV+VGNL W V+WQ+LKD+M+QAG V D+ +E GGRSKGC +VEY T + A+ AI L++TEL GR++FVREDRE EG + SK + G EGRQ+YVGNL W++ WQ LKD FR VG V+ +I E GRSRG +R+A+ A +AI+ LN E+ GR I VR D +
Sbjct: 156 AQNAIATLNDTELGERKIFVREDRETQAVAT-------TKPKRGFRVYVGNLPWNVKWQELKDHMKQAGTVVHADVLEEAGGRSKGCGLVEYATEEEANNAIAQLNNTELEGRLIFVREDREPEGGSISKFAKRTAAPRNGGEGRQLYVGNLPWDTNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYANPAHAFQAIERLNGLEIEGRLIEVRLDKK 370
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: H3GHR3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHR3_PHYRM) HSP 1 Score: 189 bits (480), Expect = 1.890e-53 Identity = 104/217 (47.93%), Postives = 137/217 (63.13%), Query Frame = 2
Query: 20 ARNAISQMSDSDLMGRPILVREYVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDRE-EGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 667
A+NAI ++DS+L GR I VRE V G RV+VGNL+W V+WQ+LKD+M++AG V D+ +E GRSKGC +VEY T A+ AI L+++EL GR++FVREDRE EG + SK + EGRQ+YVGNL WE+ WQ LKD FR VG V+ +I E GRSRG +R+ + A +AI+ LN E+ GR I VR D +
Sbjct: 127 AQNAIDTLNDSELGGRKIFVREDRETQPIAA--VKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLEESNGRSKGCGLVEYATQDEANKAIAELNNSELEGRLIFVREDREPEGGSISKLAKRAAAPRGNGEGRQLYVGNLPWETNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 341
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A0P1AA48_PLAHL (Rna-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AA48_PLAHL) HSP 1 Score: 188 bits (478), Expect = 3.740e-53 Identity = 104/223 (46.64%), Postives = 142/223 (63.68%), Query Frame = 2
Query: 20 ARNAISQMSDSDLMGRPILVRE-----YVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDRE-EGSAASKSMGPMGSRHPG-AEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 667
A+ AIS ++D++L GR I VRE +V G G RV+VGNL+W V+WQ+LKD+M++AG V D+ + GRSKGC +VEY TP+ A AI L++TEL+GR++FVREDRE EG + SK + G EGRQ+YVGNL W++ WQ LKD FR VG V+ +I E GRSRG +R+ + A +AI+ +N E+ GR+I VR D +
Sbjct: 126 AQEAISTLNDTELGGRKIFVREDRESQFVAAGKPK-------RGFRVYVGNLSWTVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYSTPEEAATAIAELNNTELDGRLIFVREDREPEGGSISKFAKRSNAPSRGNGEGRQLYVGNLPWDTNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYTTAADAWQAIERMNGMEVEGRQIEVRLDKK 341
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A8K1CTK2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTK2_PYTOL) HSP 1 Score: 189 bits (479), Expect = 4.490e-53 Identity = 102/207 (49.28%), Postives = 130/207 (62.80%), Query Frame = 2
Query: 68 PILVREYVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQL*GQDIA 688
P R VG+ G G GGAG RV+VGNL+W V+WQDLKD+MR AG V+R + E GRSKGC +V Y T AH AI L+DTEL+GR +FVREDREE + P +R +G +VYVGNLSW WQDLKDH + G+V ++ E+ GRS+G V +++ A AI LNDTEL GR+I+VR D + G I+
Sbjct: 49 PRNARYGVGETPGNGEGGDGGAGRRVYVGNLSWNVKWQDLKDHMRAAGEVERASIM-ESNGRSKGCGLVTYVTEVDAHRAIETLNDTELDGRKIFVREDREEST-------PNWTR--ATKGCRVYVGNLSWNVKWQDLKDHMKLAGTVVHADVLEEPNGRSKGCGLVEYSTPDEAQHAIMSLNDTELEGRKIFVREDREPDGGSIS 245
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: R1FPR2_EMIHU (RNA-binding protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FPR2_EMIHU) HSP 1 Score: 186 bits (473), Expect = 2.340e-52 Identity = 106/229 (46.29%), Postives = 131/229 (57.21%), Query Frame = 2
Query: 20 ARNAISQMSDSDLMGRPILVREYVGDGGNFGHGVGGGA--GARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPG-GRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAE------------GRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHD 661
A+NAI + D++L GRPI VRE G GGG G V+VGNLA+ V WQDLKD+ +Q G+V R D+ E G GRSKGC +V + +P+ A AI LHDT+L GR +FVREDRE G+ G QVYVGNLSW+ WQDLKDHF+Q G V E+ + GRSRG TV F+S A RAI + N++ GR I VR D
Sbjct: 116 AQNAIEMLHDTELKGRPIFVREDREAGAPQSSSRGGGTAPGCSVYVGNLAYEVSWQDLKDHCKQVGDVVRADVLLENGTGRSKGCGIVVFGSPKDAKTAIDTLHDTDLKGRAIFVREDREAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCQVYVGNLSWDCKWQDLKDHFKQAGDVIRAEVKDGADGRSRGFGTVLFSSAMDAARAIQKFNESNFMGRPILVRPD 344
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A7S2KX18_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KX18_9STRA) HSP 1 Score: 190 bits (482), Expect = 4.270e-52 Identity = 91/176 (51.70%), Postives = 117/176 (66.48%), Query Frame = 2
Query: 140 RVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDREEGSAASKSMGPMGSRHPGAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHDNQ 667
R++VGNL+W V W++LKD+M+ AG+V R D+ Q P GRSKGC +VE+ T + A A+ L+D+EL GR +FVREDRE AA A ++VYVGNL++E WQDLKDH R G VQF E+ GRS+G V FA E+GA AID LNDTEL GR+I+VR D +
Sbjct: 91 RLYVGNLSWSVSWRELKDHMKSAGDVTRADILQTPDGRSKGCGIVEFATAEEASNAVETLNDSELMGRQIFVREDREAEKAAD------------ASSKRVYVGNLAYEVAWQDLKDHMRDAGEVQFAEVMMMNDGRSKGCGIVEFADEEGAQNAIDTLNDTELCGRQIFVREDRE 254
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Match: A0A484EGA9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGA9_BRELC) HSP 1 Score: 185 bits (470), Expect = 5.710e-52 Identity = 104/217 (47.93%), Postives = 138/217 (63.59%), Query Frame = 2
Query: 20 ARNAISQMSDSDLMGRPILVREYVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKDYMRQAGNVKRVDLFQEPGGRSKGCAVVEYETPQGAHAAIRNLHDTELNGRMMFVREDRE-EGSAASKSMGPMGSRHP--GAEGRQVYVGNLSWESGWQDLKDHFRQVGSVQFVEIPEDVQGRSRGHATVRFASEQGANRAIDELNDTELGGRRIYVRHD 661
A+NAI+ ++D++L GR I VRE V G RV+VGNL+W V+WQ+LKD+M+Q G V D+ + GRSKGC +VEY T + A AI L++TEL GR++FVREDRE EG + SK + S P +GRQ+YVGNL W++ WQ LKD FR VG V+ +I E GRSRG +RF + A +AI++LN E+ GR I VR D
Sbjct: 126 AQNAIASLNDTELGGRKIFVREDRES--QSVSAVKPKRGLRVYVGNLSWTVKWQELKDHMKQVGTVVHADVLELSNGRSKGCGLVEYSTEEEAALAISELNNTELEGRLIFVREDREPEGGSISKFV-KRASAPPRVNGDGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYSDGRSRGFGIIRFTNAADACQAIEQLNGLEVEGRMIEVRLD 339 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13148.2272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13148.2272.1 >prot_H-elongata_contig13148.2272.1 ID=prot_H-elongata_contig13148.2272.1|Name=mRNA_H-elongata_contig13148.2272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=211bp MSDSDLMGRPILVREYVGDGGNFGHGVGGGAGARVFVGNLAWGVQWQDLKback to top mRNA from alignment at H-elongata_contig13148:5624..7924+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13148.2272.1 ID=mRNA_H-elongata_contig13148.2272.1|Name=mRNA_H-elongata_contig13148.2272.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2301bp|location=Sequence derived from alignment at H-elongata_contig13148:5624..7924+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13148:5624..7924+ >mRNA_H-elongata_contig13148.2272.1 ID=mRNA_H-elongata_contig13148.2272.1|Name=mRNA_H-elongata_contig13148.2272.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1266bp|location=Sequence derived from alignment at H-elongata_contig13148:5624..7924+ (Himanthalia elongata Himel1 dioecious)back to top |