mRNA_H-elongata_contig13144.2268.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13144.2268.1
Unique NamemRNA_H-elongata_contig13144.2268.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13144.2268.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.640e-33
Identity = 70/137 (51.09%), Postives = 91/137 (66.42%), Query Frame = 2 
Query:    2 LEAMNQQGQLGPNISTFKNRDLLDDLRSMLCADALVLSRSSLHFLTTALTRASTFYIPSECGPGRYNRASKVGPHPKVVPENTTLLLLEKPEAEVYGVEWQLGLESYSPYTSWNNTQMQVKEMIDYDGIE-LKKCCV 409
            LE M + G LG N+   KNR LL+D+R MLCADAL  SRSS+ FLT A +RA+TF++P+ CG G + R  +  P  K   +NTTLLLLEKP+AEVYG  W      YS Y +W++T  Q+ EM  + GIE ++KC V
Sbjct:  314 LEVMAKAGTLGDNVRLLKNRSLLEDVREMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNGGFRRMRR--PPVKATFDNTTLLLLEKPDAEVYGTAWPGNSPKYSVYQAWHDTPEQLLEMATFGGIEGVQKCSV 448
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BLAST of mRNA_H-elongata_contig13144.2268.1 vs. uniprot
Match: D7FRV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV8_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.860e-31
Identity = 68/137 (49.64%), Postives = 89/137 (64.96%), Query Frame = 2 
Query:    2 LEAMNQQGQLGPNISTFKNRDLLDDLRSMLCADALVLSRSSLHFLTTALTRASTFYIPSECGPGRYNRASKVGPHPKVVPENTTLLLLEKPEAEVYGVEWQLGLESYSPYTSWNNTQMQVKEMIDYDGIE-LKKCCV 409
            LE M   G LG N+  F NR LL D++ MLCADAL  SRSS+ FLT A +RA+TF++P+ CG G + R   V    K   +NTTLLLLEK E+EV+GV+W+     YS Y +W ++  Q+ EM  Y GI+ L+KC V
Sbjct:  178 LEMMADAGVLGENVHLFNNRTLLTDMKEMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNGGFRRMKDVPV--KATFDNTTLLLLEKRESEVFGVDWRQNGSDYSVYKNWLDSPHQLLEMTTYKGIKGLQKCTV 312
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BLAST of mRNA_H-elongata_contig13144.2268.1 vs. uniprot
Match: D8LSV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV7_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 6.900e-20
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 2 
Query:    2 LEAMNQQGQLGPNISTFKNRDLLDDLRSMLCADALVLSRSSLHFLTTALTRASTFYIPSECGPGRYNRASKVGPHPKVVPENTTLLLLEKPEAEVYGVEWQLGLESYSPYTSWNNTQMQVKEMIDYDGIE-LKKCCV 409
            L+ +++QG LG   + + +RDL  DLR MLCA+ +VL++SS+  L    +RA  F++P+ C  G               P     + L +P+ EVYG+EW+  L  YS Y  W NT  Q  EMI  D ++ +++CCV
Sbjct:   76 LQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGG--------------PFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCV 198
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BLAST of mRNA_H-elongata_contig13144.2268.1 vs. uniprot
Match: A0A6H5L0Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z0_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.560e-18
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 2 
Query:    2 LEAMNQQGQLGPNISTFKNRDLLDDLRSMLCADALVLSRSSLHFLTTALTRASTFYIPSECGPGRYNRASKVGPHPKVVPENTTLLLLEKPEAEVYGVEWQLGLESYSPYTSWNNTQMQVKEMIDYDGIE-LKKCCV 409
            L+ +++QG LG   + + +RDL  DLR MLCA+ +VL++SS+  L    +RA  F++P+ C  G               P     + L +P+ EVYG+EW+  L  YS Y  W NT  Q  EMI  D ++ +++CCV
Sbjct:  298 LQELDKQGLLGAPANFYADRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGG--------------PFFVDRICLYRPDVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCV 420
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BLAST of mRNA_H-elongata_contig13144.2268.1 vs. uniprot
Match: D7FSJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ7_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.760e-16
Identity = 48/140 (34.29%), Postives = 82/140 (58.57%), Query Frame = 2 
Query:    2 LEAMNQQGQLGPN---ISTFKNRDLLDDLRSMLCADALVLSRSSLHFLTTALTRASTFYIPSECGPGRYNRASKVGPH--PKVVPENTTLLLLEKPEAEVYGVEWQLGLESYSPYTSWNNTQMQVKEMIDYDGIELKKCC 406
            +E +  QG LG N   + T+K R L +DL++MLCADAL ++ S+L  L  A +RA  F++P  C P       ++G    P+ V  + +++ L++PE EVYG+EW+    +Y+ Y  W+ +  Q++ ++  D   ++ CC
Sbjct:  224 IEELISQGILGTNGTIVETYKKRSLWEDLQAMLCADALSVAHSTLTNLLLAHSRAKMFFLPWGCEP-------QIGDMMIPRFV--SASMICLQRPEVEVYGIEWRTTSNAYTVYNKWDPSVNQLEMIVSDDLKGVQHCC 354
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BLAST of mRNA_H-elongata_contig13144.2268.1 vs. uniprot
Match: D7FHC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC1_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 6.290e-16
Identity = 48/137 (35.04%), Postives = 81/137 (59.12%), Query Frame = 2 
Query:    2 LEAMNQQGQLGPNISTFKNRDLLDDLRSMLCADALVLSRSSLHFLTTALTRASTFYIPSECGPGRYNRASKVGPHPKVVPENTTLLLLEKPEAEVYGVEWQLGLESYSPYTSWN-NTQMQVKEMIDYDGIE-LKKCC 406
            +  +N+QG LG N+   K+R    DL++MLCAD L LS S+L  L  A +RA  F++P  C P  +          + V  N +++ L++PE +VYG++W+   ++Y+ Y SW+ N+ M   EM+  D ++ +++CC
Sbjct:  432 IAELNRQGYLGTNVGMHKDRSFWVDLQTMLCADNLALSHSTLSNLLLAHSRAKRFFLPWGCEPQPWTLKLN-----RFV--NASMICLQRPEVQVYGIDWRTTKDAYTVYDSWDPNSNMM--EMVVSDAVKGVQRCC 559
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13144.2268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FRV9_ECTSI1.640e-3351.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRV8_ECTSI1.860e-3149.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSV7_ECTSI6.900e-2036.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0Z0_9PHAE1.560e-1836.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSJ7_ECTSI5.760e-1634.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHC1_ECTSI6.290e-1635.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13144contigH-elongata_contig13144:5566..6876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size597
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13144.2268.1prot_H-elongata_contig13144.2268.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13144 5576..6691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.4693341-UTR-H-elongata_contig13144:5565..55751622929780.4693341-UTR-H-elongata_contig13144:5565..5575Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13144 5566..5575 +
1691679154.8431785-UTR-H-elongata_contig13144:5565..55751691679154.8431785-UTR-H-elongata_contig13144:5565..5575Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13144 5566..5575 +
1622929780.5484598-UTR-H-elongata_contig13144:6691..68761622929780.5484598-UTR-H-elongata_contig13144:6691..6876Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13144 6692..6876 +
1691679154.8986094-UTR-H-elongata_contig13144:6691..68761691679154.8986094-UTR-H-elongata_contig13144:6691..6876Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13144 6692..6876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.4826956-CDS-H-elongata_contig13144:5575..56201622929780.4826956-CDS-H-elongata_contig13144:5575..5620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13144 5576..5620 +
1691679154.860127-CDS-H-elongata_contig13144:5575..56201691679154.860127-CDS-H-elongata_contig13144:5575..5620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13144 5576..5620 +
1622929780.498-CDS-H-elongata_contig13144:5876..59221622929780.498-CDS-H-elongata_contig13144:5876..5922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13144 5877..5922 +
1691679154.8715353-CDS-H-elongata_contig13144:5876..59221691679154.8715353-CDS-H-elongata_contig13144:5876..5922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13144 5877..5922 +
1622929780.5123508-CDS-H-elongata_contig13144:6105..62871622929780.5123508-CDS-H-elongata_contig13144:6105..6287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13144 6106..6287 +
1691679154.88115-CDS-H-elongata_contig13144:6105..62871691679154.88115-CDS-H-elongata_contig13144:6105..6287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13144 6106..6287 +
1622929780.52808-CDS-H-elongata_contig13144:6562..66911622929780.52808-CDS-H-elongata_contig13144:6562..6691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13144 6563..6691 +
1691679154.8900793-CDS-H-elongata_contig13144:6562..66911691679154.8900793-CDS-H-elongata_contig13144:6562..6691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13144 6563..6691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13144.2268.1

>prot_H-elongata_contig13144.2268.1 ID=prot_H-elongata_contig13144.2268.1|Name=mRNA_H-elongata_contig13144.2268.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MNQQGQLGPNISTFKNRDLLDDLRSMLCADALVLSRSSLHFLTTALTRAS
TFYIPSECGPGRYNRASKVGPHPKVVPENTTLLLLEKPEAEVYGVEWQLG
LESYSPYTSWNNTQMQVKEMIDYDGIELKKCCV*
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mRNA from alignment at H-elongata_contig13144:5566..6876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13144.2268.1 ID=mRNA_H-elongata_contig13144.2268.1|Name=mRNA_H-elongata_contig13144.2268.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1311bp|location=Sequence derived from alignment at H-elongata_contig13144:5566..6876+ (Himanthalia elongata Himel1 dioecious)
CCTGGAGGCCATGAATCAGCAGGGGCAATTGGGGCCAAATATCAGCACTT
TCAAGGTACGGTTATAAGGCGTACCAATTTCGCGCCAGGACCTTTCTACG
CCTTCAACTTGGAGCTTCTACAATGTAACGCATGTTCGTGGCTACTAAAA
TTCCCTTCAAAAGTTCCTGTCGAATGTCTGAAGATGTTCACGGCGTAATA
ATAACAAGAAGAAATGTAACTTCAAATTATAATAACGCTTTCACGCCTCG
TTTTTGTTGAAAACGGCTCGCCGGTATGTCGTTACGGGGGTGCATCGTCT
CCAACTTGAAGAATCGGGACCTTCTAGACGATCTTCGGTCAATGCTTTGT
GCGGATGGTAAGATCGACATTCAGTCTTCCGGGTTGCCCGGGGTTGTTAC
CGAGCGTGACAGTGTTATCATGGTCATTGTTTAACCCAGGACGGAAATCG
ACGGCGTGTCTTGCATTATTCTAAATTTTGAATCGGCTGGATGACATTAA
TATATTCCCACCCTTACGTTGTCTTGATGCGCCTTGCCAGCTCTTGTTTT
ATCTCGATCAAGCCTTCACTTCTTGACAACTGCCCTCACGCGAGCCTCCA
CCTTCTATATACCTTCGGAGTGCGGCCCAGGGAGATACAACCGTGCGTCA
AAGGTCGGACCGCACCCGAAGGTTGTCCCGGAAAACACGACACTTTTGCT
CCTCGAAAAACCGGAAGCAGAGGTAAGATCGGTCTGTAGACGTCGTATAG
CGATTAGTTTGTACATATTGAGATCCACATCCCAGATGACGATATACCGG
CTGCCAAAGGTAGCCGAGATAGGAAGTTACATAATATCCAGTTTTTTCTT
CGTTCGATAATGGTTGTGCTTCAATGAGATGAAGGAACTAATCTAGGCTA
CCTTGACGTTCGAAAAGTATGTCGTTCGAAGAGTGTCACGTTTTGTGTAT
TGAAACCCAATGTATTTACTCCCTTTCCATCCCCGTTACAAAAACAGGTA
TACGGTGTCGAGTGGCAGCTTGGACTGGAATCGTATAGCCCTTACACTTC
GTGGAACAATACACAAATGCAAGTGAAAGAGATGATCGATTACGATGGCA
TCGAGTTGAAGAAGTGTTGCGTCTGATGATTCAGATGGGAGTCTACCAGT
GAGTGCGGCGGATATGGGTTGCGGTACTCTTATCTCATCAGTGCATTTCA
TTATCTCTGTTCAAGAAAAACCGATTTAGGGCGCTCAGAAGAATCATATT
CCGAGCTTGTTACGAAACAACTAAAATCACTTACTTGCCCCACATACGTT
GTTGACGGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig13144:5566..6876+

>mRNA_H-elongata_contig13144.2268.1 ID=mRNA_H-elongata_contig13144.2268.1|Name=mRNA_H-elongata_contig13144.2268.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig13144:5566..6876+ (Himanthalia elongata Himel1 dioecious)
ATGAATCAGCAGGGGCAATTGGGGCCAAATATCAGCACTTTCAAGATGAA
TCAGCAGGGGCAATTGGGGCCAAATATCAGCACTTTCAAGAATCGGGACC
TTCTAGACGATCTTCGGTCAATGCTTTGTGCGGATGAATCGGGACCTTCT
AGACGATCTTCGGTCAATGCTTTGTGCGGATGCTCTTGTTTTATCTCGAT
CAAGCCTTCACTTCTTGACAACTGCCCTCACGCGAGCCTCCACCTTCTAT
ATACCTTCGGAGTGCGGCCCAGGGAGATACAACCGTGCGTCAAAGGTCGG
ACCGCACCCGAAGGTTGTCCCGGAAAACACGACACTTTTGCTCCTCGAAA
AACCGGAAGCAGAGCTCTTGTTTTATCTCGATCAAGCCTTCACTTCTTGA
CAACTGCCCTCACGCGAGCCTCCACCTTCTATATACCTTCGGAGTGCGGC
CCAGGGAGATACAACCGTGCGTCAAAGGTCGGACCGCACCCGAAGGTTGT
CCCGGAAAACACGACACTTTTGCTCCTCGAAAAACCGGAAGCAGAGGTAT
ACGGTGTCGAGTGGCAGCTTGGACTGGAATCGTATAGCCCTTACACTTCG
TGGAACAATACACAAATGCAAGTGAAAGAGATGATCGATTACGATGGCAT
CGAGTTGAAGAAGTGTTGCGTCTGAGTATACGGTGTCGAGTGGCAGCTTG
GACTGGAATCGTATAGCCCTTACACTTCGTGGAACAATACACAAATGCAA
GTGAAAGAGATGATCGATTACGATGGCATCGAGTTGAAGAAGTGTTGCGT
CTGA
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