mRNA_H-elongata_contig131387.2266.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131387.2266.1
Unique NamemRNA_H-elongata_contig131387.2266.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131387.2266.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.250e-19
Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = 1 
Query:   49 VTFVVAYAPTEEATEGQKAKYIAALNSTISSVPARKYVFILTDANARTGKRVEGGGEAESNVLVAYDRNVLNKNGKLLFNFAEDNKRDLRNACFFIPQNGVSYTFQSANRGKGQARLDYILTK 417
            V FV A APTE +T   K  +   L+S +  +P+++ V++L DANARTG R++GG   +  V+  Y R+ LN NG LL NFA +N+  L N  F   + G+ +T+   + G    RLDYILT+
Sbjct:  164 VNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDRLDGG---DGRVIGMYGRDELNDNGMLLLNFATENRLALTNTFFETRKGGIWHTYNGVS-GNDCKRLDYILTR 282
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BLAST of mRNA_H-elongata_contig131387.2266.1 vs. uniprot
Match: A0A6P4YMD7_BRABE (uncharacterized protein LOC109466573 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YMD7_BRABE)

HSP 1 Score: 53.9 bits (128), Expect = 1.110e-5
Identity = 38/138 (27.54%), Postives = 61/138 (44.20%), Query Frame = 1 
Query:    1 ISTHLLKARISIKPNFVTFVVAYAPTEEATEGQKAKYIAALNSTISSVPARKYVFILTDANARTGKRVEGGGEAESNVLVAYDRNVLNKNGKLLFNFAEDNKRDLRNACFFIPQNGVSYTFQSANRGKGQARLDYILT 414
            +   LL AR+  K   ++ +VAYAPTE A+E  K  +   L++  S +     +++L D NA TG    G      + L  +     N NG+ L  +   ++  LR    F P   +      +N       +D+ILT
Sbjct:  105 VDNRLLMARLRHKHGNISIIVAYAPTEVASEEDKDSFYIKLSALTSGISRHDIIWVLGDLNAATGSDRRGF----EHCLGPHGVGECNDNGRRLLEYCSSHR--LRTERSFFPHKRIHSMTWISNDHYTTKEVDHILT 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131387.2266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBD7_9PHAE1.250e-1941.46Reverse transcriptase domain-containing protein n=... [more]
A0A6P4YMD7_BRABE1.110e-527.54uncharacterized protein LOC109466573 n=1 Tax=Branc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131387contigH-elongata_contig131387:517..936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.3053973-CDS-H-elongata_contig131387:516..9361622929780.3053973-CDS-H-elongata_contig131387:516..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131387 517..936 +
1691679154.792609-CDS-H-elongata_contig131387:516..9361691679154.792609-CDS-H-elongata_contig131387:516..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131387 517..936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131387.2266.1prot_H-elongata_contig131387.2266.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131387 517..936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131387.2266.1

>prot_H-elongata_contig131387.2266.1 ID=prot_H-elongata_contig131387.2266.1|Name=mRNA_H-elongata_contig131387.2266.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
ISTHLLKARISIKPNFVTFVVAYAPTEEATEGQKAKYIAALNSTISSVPA
RKYVFILTDANARTGKRVEGGGEAESNVLVAYDRNVLNKNGKLLFNFAED
NKRDLRNACFFIPQNGVSYTFQSANRGKGQARLDYILTK*
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mRNA from alignment at H-elongata_contig131387:517..936+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131387.2266.1 ID=mRNA_H-elongata_contig131387.2266.1|Name=mRNA_H-elongata_contig131387.2266.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig131387:517..936+ (Himanthalia elongata Himel1 dioecious)
ATCAGCACACATCTCCTGAAGGCTCGAATATCGATCAAACCTAATTTTGT
TACGTTTGTGGTAGCCTACGCTCCAACAGAGGAAGCAACGGAGGGGCAGA
AGGCCAAGTACATCGCAGCCCTCAACAGCACCATATCATCAGTGCCCGCT
CGGAAATACGTCTTCATTTTGACCGACGCAAATGCCAGGACAGGGAAAAG
GGTTGAGGGAGGCGGGGAAGCAGAAAGCAATGTATTGGTCGCATATGACC
GAAACGTGCTTAACAAAAACGGCAAACTACTGTTCAACTTTGCAGAAGAT
AACAAGCGCGATCTTCGGAATGCTTGTTTTTTTATCCCCCAAAATGGCGT
ATCATACACATTCCAAAGTGCCAACCGTGGCAAGGGGCAAGCGCGTCTGG
ACTATATCCTGACAAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig131387:517..936+

>mRNA_H-elongata_contig131387.2266.1 ID=mRNA_H-elongata_contig131387.2266.1|Name=mRNA_H-elongata_contig131387.2266.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig131387:517..936+ (Himanthalia elongata Himel1 dioecious)
ATCAGCACACATCTCCTGAAGGCTCGAATATCGATCAAACCTAATTTTGT
TACGTTTGTGGTAGCCTACGCTCCAACAGAGGAAGCAACGGAGGGGCAGA
AGGCCAAGTACATCGCAGCCCTCAACAGCACCATATCATCAGTGCCCGCT
CGGAAATACGTCTTCATTTTGACCGACGCAAATGCCAGGACAGGGAAAAG
GGTTGAGGGAGGCGGGGAAGCAGAAAGCAATGTATTGGTCGCATATGACC
GAAACGTGCTTAACAAAAACGGCAAACTACTGTTCAACTTTGCAGAAGAT
AACAAGCGCGATCTTCGGAATGCTTGTTTTTTTATCCCCCAAAATGGCGT
ATCATACACATTCCAAAGTGCCAACCGTGGCAAGGGGCAAGCGCGTCTGG
ACTATATCCTGACAAAGTAGATCAGCACACATCTCCTGAAGGCTCGAATA
TCGATCAAACCTAATTTTGTTACGTTTGTGGTAGCCTACGCTCCAACAGA
GGAAGCAACGGAGGGGCAGAAGGCCAAGTACATCGCAGCCCTCAACAGCA
CCATATCATCAGTGCCCGCTCGGAAATACGTCTTCATTTTGACCGACGCA
AATGCCAGGACAGGGAAAAGGGTTGAGGGAGGCGGGGAAGCAGAAAGCAA
TGTATTGGTCGCATATGACCGAAACGTGCTTAACAAAAACGGCAAACTAC
TGTTCAACTTTGCAGAAGATAACAAGCGCGATCTTCGGAATGCTTGTTTT
TTTATCCCCCAAAATGGCGTATCATACACATTCCAAAGTGCCAACCGTGG
CAAGGGGCAAGCGCGTCTGGACTATATCCTGACAAAGTAG
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