mRNA_H-elongata_contig131370.2264.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131370.2264.1
Unique NamemRNA_H-elongata_contig131370.2264.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig131370.2264.1 vs. uniprot
Match: D7FNK5_ECTSI (Imidazoleglycerol-phosphate dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK5_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 8.270e-42
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:    1 RKTNETMITVDICLDGTGKAEVDTGLGFLDHMLHAMAKHGHLDLKLTCKGDLHIDDHHTAEDCAIALGEAFDK 219
            RKTNET ITVDI LDGTGKAEVDTGLGFLDHMLHAMAKHGHLDLKLTCKGDLHIDDHHTAEDCAIALGEAFDK
Sbjct:  288 RKTNETAITVDISLDGTGKAEVDTGLGFLDHMLHAMAKHGHLDLKLTCKGDLHIDDHHTAEDCAIALGEAFDK 360
[Close]
BLAST of mRNA_H-elongata_contig131370.2264.1 vs. uniprot
Match: A0A7S0MBW8_9CRYP (Imidazoleglycerol-phosphate dehydratase (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MBW8_9CRYP)

HSP 1 Score: 119 bits (298), Expect = 5.930e-33
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 RKTNETMITVDICLDGTGKAEVDTGLGFLDHMLHAMAKHGHLDLKLTCKGDLHIDDHHTAEDCAIALGEAFDK 219
            RKT ET I V+I LDGTGK ++++G+GFLDHM  AM+KHG  DL+L CKGDLHIDDHHTAEDCA+ALG+AFDK
Sbjct:   25 RKTKETDIEVEIDLDGTGKQDIESGIGFLDHMFSAMSKHGRFDLRLRCKGDLHIDDHHTAEDCALALGQAFDK 97
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BLAST of mRNA_H-elongata_contig131370.2264.1 vs. uniprot
Match: A0A7S2XXK4_9STRA (Imidazoleglycerol-phosphate dehydratase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXK4_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.660e-32
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    1 RKTNETMITVDICLDGTGKAEVDTGLGFLDHMLHAMAKHGHLDLKLTCKGDLHIDDHHTAEDCAIALGEAFDK 219
            RKT+ET I+V I LDGTGK E+ TGLGFLDHML A+AKHG LD+ L CKGDLHIDDHHTAEDCA+ALGEAFDK
Sbjct:  138 RKTSETDISVSINLDGTGKGELSTGLGFLDHMLGALAKHGGLDISLHCKGDLHIDDHHTAEDCALALGEAFDK 210
[Close]
BLAST of mRNA_H-elongata_contig131370.2264.1 vs. uniprot
Match: L1K3F7_GUITC (Imidazoleglycerol-phosphate dehydratase n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1K3F7_GUITC)

HSP 1 Score: 117 bits (293), Expect = 1.490e-31
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 RKTNETMITVDICLDGTGKAEVDTGLGFLDHMLHAMAKHGHLDLKLTCKGDLHIDDHHTAEDCAIALGEAFDK 219
            RKT ET + V++ LDGTGK+++ TG+GFLDHM  AM+KHG +DL L CKGDLHIDDHHTAEDCA+ +GEAFDK
Sbjct:    9 RKTKETDVEVELNLDGTGKSDISTGIGFLDHMFTAMSKHGRIDLTLKCKGDLHIDDHHTAEDCALTVGEAFDK 81
[Close]
BLAST of mRNA_H-elongata_contig131370.2264.1 vs. uniprot
Match: A0A7S0YV81_9CRYP (Imidazoleglycerol-phosphate dehydratase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YV81_9CRYP)

HSP 1 Score: 117 bits (292), Expect = 2.400e-31
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 RKTNETMITVDICLDGTGKAEVDTGLGFLDHMLHAMAKHGHLDLKLTCKGDLHIDDHHTAEDCAIALGEAFDK 219
            RKT ET I+V I LDGTG+ +VDTG+GFLDHM+  M+KHG LD+ + CKGDLHI DHHTAEDCAIALGEAFDK
Sbjct:   14 RKTKETEISVTINLDGTGQHDVDTGIGFLDHMISQMSKHGRLDITMRCKGDLHICDHHTAEDCAIALGEAFDK 86
[Close]
BLAST of mRNA_H-elongata_contig131370.2264.1 vs. uniprot
Match: A0A518EPI9_9BACT (Imidazoleglycerol-phosphate dehydratase n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EPI9_9BACT)

HSP 1 Score: 112 bits (281), Expect = 1.220e-29
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 RKTNETMITVDICLDGTGKAEVDTGLGFLDHMLHAMAKHGHLDLKLTCKGDLHIDDHHTAEDCAIALGEAFDK 219
            RKT ET I+  + LDGTG+A V TG+GFLDHML A+AKHG  DL L+C+GDL IDDHHTAEDCAI LGEAFD+
Sbjct:   19 RKTRETSISCSLDLDGTGEAAVSTGIGFLDHMLTALAKHGRFDLALSCQGDLEIDDHHTAEDCAIVLGEAFDE 91
[Close]
BLAST of mRNA_H-elongata_contig131370.2264.1 vs. uniprot
Match: A0A6L7PBI3_9CHLR (Imidazoleglycerol-phosphate dehydratase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7PBI3_9CHLR)

HSP 1 Score: 109 bits (272), Expect = 7.390e-29
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 RKTNETMITVDICLDGTGKAEVDTGLGFLDHMLHAMAKHGHLDLKLTCKGDLHIDDHHTAEDCAIALGEAFDK 219
            R T ET I V++ +DGTG+A V TG+GF DHML A AKHG  DL+LTC+GDLH+DDHHT EDCA+ALG AFD+
Sbjct:   10 RDTAETRIHVELDVDGTGEARVGTGVGFYDHMLEAFAKHGRFDLQLTCEGDLHVDDHHTMEDCALALGAAFDE 82
[Close]
BLAST of mRNA_H-elongata_contig131370.2264.1 vs. uniprot
Match: A0A7S0SV89_9STRA (Imidazoleglycerol-phosphate dehydratase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SV89_9STRA)

HSP 1 Score: 111 bits (277), Expect = 8.360e-29
Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 RKTNETMITVDICLDGTGKAEVDTGLGFLDHMLHAMAKHGHLDLKLTCKGDLHIDDHHTAEDCAIALGEAFDK 219
            R+T ET I   + LDGTG + + TGLGFLDHM   ++KHG  D+ L CKGDLHIDDHHTAEDCA+ALGEAFDK
Sbjct:   40 RQTKETSIYASVLLDGTGISNISTGLGFLDHMFSQLSKHGRFDINLECKGDLHIDDHHTAEDCALALGEAFDK 112
[Close]
BLAST of mRNA_H-elongata_contig131370.2264.1 vs. uniprot
Match: A0A2V7QLN0_9BACT (Imidazoleglycerol-phosphate dehydratase n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7QLN0_9BACT)

HSP 1 Score: 109 bits (273), Expect = 1.640e-28
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 RKTNETMITVDICLDGTGKAEVDTGLGFLDHMLHAMAKHGHLDLKLTCKGDLHIDDHHTAEDCAIALGEAFDK 219
            R T ET ITV + LDGTG  +V TG+GFLDH+L A+ +H  LDL + CKGDLHIDDHHTAEDCA+ALG+A D+
Sbjct:   10 RATRETSITVTLALDGTGAVDVKTGIGFLDHLLDALGRHARLDLTVACKGDLHIDDHHTAEDCALALGQALDR 82
[Close]
BLAST of mRNA_H-elongata_contig131370.2264.1 vs. uniprot
Match: A0A7S3Y389_HETAK (Imidazoleglycerol-phosphate dehydratase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y389_HETAK)

HSP 1 Score: 115 bits (287), Expect = 1.810e-28
Identity = 54/73 (73.97%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 RKTNETMITVDICLDGTGKAEVDTGLGFLDHMLHAMAKHGHLDLKLTCKGDLHIDDHHTAEDCAIALGEAFDK 219
            R T ET I+  I LDGTGKA+VDTGLGFLDHML A++K    DL L C+GDLHIDDHHTAEDCA+ALGEAFDK
Sbjct:  310 RDTKETQISCTIDLDGTGKAQVDTGLGFLDHMLTALSKFSRFDLALRCRGDLHIDDHHTAEDCALALGEAFDK 382
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131370.2264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNK5_ECTSI8.270e-4297.26Imidazoleglycerol-phosphate dehydratase n=2 Tax=Ec... [more]
A0A7S0MBW8_9CRYP5.930e-3372.60Imidazoleglycerol-phosphate dehydratase (Fragment)... [more]
A0A7S2XXK4_9STRA1.660e-3279.45Imidazoleglycerol-phosphate dehydratase n=1 Tax=Fi... [more]
L1K3F7_GUITC1.490e-3169.86Imidazoleglycerol-phosphate dehydratase n=2 Tax=Ge... [more]
A0A7S0YV81_9CRYP2.400e-3173.97Imidazoleglycerol-phosphate dehydratase n=1 Tax=He... [more]
A0A518EPI9_9BACT1.220e-2971.23Imidazoleglycerol-phosphate dehydratase n=1 Tax=Pl... [more]
A0A6L7PBI3_9CHLR7.390e-2967.12Imidazoleglycerol-phosphate dehydratase (Fragment)... [more]
A0A7S0SV89_9STRA8.360e-2967.12Imidazoleglycerol-phosphate dehydratase n=1 Tax=Ch... [more]
A0A2V7QLN0_9BACT1.640e-2865.75Imidazoleglycerol-phosphate dehydratase n=3 Tax=Ge... [more]
A0A7S3Y389_HETAK1.810e-2873.97Imidazoleglycerol-phosphate dehydratase n=2 Tax=He... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131370contigH-elongata_contig131370:493..1175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue2.1e-31
Seed eggNOG ortholog2880.D7FNK5
Preferred nameHIS3
KEGG rclassRC00932
KEGG koko:K01693,ko:K14713
KEGG TC2.A.5.4.3,2.A.5.4.4,2.A.5.4.7
KEGG ReactionR03457
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.imidazoleglycerol-phosphate dehydratase activity
EggNOG OGsCOG0131@1,KOG3143@2759
EC4.2.1.19
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131370.2264.1prot_H-elongata_contig131370.2264.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131370 511..1175 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.0247655-UTR-H-elongata_contig131370:492..5101622929780.0247655-UTR-H-elongata_contig131370:492..510Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131370 493..510 +
1691679154.7445805-UTR-H-elongata_contig131370:492..5101691679154.7445805-UTR-H-elongata_contig131370:492..510Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131370 493..510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.0411346-CDS-H-elongata_contig131370:510..5551622929780.0411346-CDS-H-elongata_contig131370:510..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131370 511..555 +
1691679154.7559655-CDS-H-elongata_contig131370:510..5551691679154.7559655-CDS-H-elongata_contig131370:510..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131370 511..555 +
1622929780.1920645-CDS-H-elongata_contig131370:1016..11751622929780.1920645-CDS-H-elongata_contig131370:1016..1175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131370 1017..1175 +
1691679154.7645056-CDS-H-elongata_contig131370:1016..11751691679154.7645056-CDS-H-elongata_contig131370:1016..1175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131370 1017..1175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131370.2264.1

>prot_H-elongata_contig131370.2264.1 ID=prot_H-elongata_contig131370.2264.1|Name=mRNA_H-elongata_contig131370.2264.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MITVDICLDGTGKAEVDTGLGFLDHMLHAMAKHGHLDLKLTCKGDLHIDD
HHTAEDCAIALGEAFDK*
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mRNA from alignment at H-elongata_contig131370:493..1175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131370.2264.1 ID=mRNA_H-elongata_contig131370.2264.1|Name=mRNA_H-elongata_contig131370.2264.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=683bp|location=Sequence derived from alignment at H-elongata_contig131370:493..1175+ (Himanthalia elongata Himel1 dioecious)
AGAAAAACGAATGAAACGATGATAACGGTCGACATCTGCCTGGACGGCAC
TGGCAAGGCCGAGGTAAGTCACAGCGCGAACCCAGGCGGTCCAAGCCAAG
CGCGTGCGTGCGTGCGTGCCGTAGTAGACCACTCACTGATGTTCGGGTCC
ATCTCCCTGAACTCCCGCTGCTGCTGCTGCTGCTGCTGCTGCCGTCCTAT
TTCCCGACAATATAAGAACACGGTCAGGGCTGCAACGCCCACCACTGATA
TGTCTGGTACGATGCCTCGCTCGCTTTTATGTCTGGTACGCTGGACGCCG
CGGTGACGTGGGCACGAGAGCCTCTTTTGACGTCTGCTCGACACCCACCC
ACCCACTCTCCCTGTTTCCTGAGCTCTCGTCTCGGGTGTAACGAAAAAAT
AAGTATGCTCCTAGTCATTCTTCGTCCCATTGGTTCGTTGGCGTCATTGG
ACCATCCCATTGGACCATCCCATTGAACCATCCCATTGGACCATCCCTTT
GAACCACCCCGATCAAATCGAAAGGTCGATACCGGCCTGGGGTTCCTGGA
CCACATGCTCCACGCGATGGCCAAGCACGGCCACCTGGACCTGAAGCTGA
CCTGCAAGGGTGACCTCCACATTGACGACCACCACACGGCCGAGGACTGT
GCTATCGCGCTAGGAGAAGCCTTTGACAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig131370:493..1175+

>mRNA_H-elongata_contig131370.2264.1 ID=mRNA_H-elongata_contig131370.2264.1|Name=mRNA_H-elongata_contig131370.2264.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig131370:493..1175+ (Himanthalia elongata Himel1 dioecious)
ATGATAACGGTCGACATCTGCCTGGACGGCACTGGCAAGGCCGAGATGAT
AACGGTCGACATCTGCCTGGACGGCACTGGCAAGGCCGAGGTCGATACCG
GCCTGGGGTTCCTGGACCACATGCTCCACGCGATGGCCAAGCACGGCCAC
CTGGACCTGAAGCTGACCTGCAAGGGTGACCTCCACATTGACGACCACCA
CACGGCCGAGGACTGTGCTATCGCGCTAGGAGAAGCCTTTGACAAGTGAG
TCGATACCGGCCTGGGGTTCCTGGACCACATGCTCCACGCGATGGCCAAG
CACGGCCACCTGGACCTGAAGCTGACCTGCAAGGGTGACCTCCACATTGA
CGACCACCACACGGCCGAGGACTGTGCTATCGCGCTAGGAGAAGCCTTTG
ACAAGTGA
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