mRNA_H-elongata_contig131321.2260.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131321.2260.1
Unique NamemRNA_H-elongata_contig131321.2260.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131321.2260.1 vs. uniprot
Match: A0A836CD73_9STRA (Mo25-like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD73_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.050e-30
Identity = 64/84 (76.19%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:    1 QFLSQKFETVFEKYDILLKSSNYVTRRQSLKLLGELLLDRANFQVMMRYIQASASNKENLKMMMNLLRDKSHNIQYEAFHVFKV 252
            +FLS++F+TVF KY ILL S NYVTRRQSLKLLGELLLDR+NF VMMRYI     N++NLK MM LLRDKS NIQYEAFHVFKV
Sbjct:  189 EFLSERFDTVFSKYTILLDSENYVTRRQSLKLLGELLLDRSNFAVMMRYI----CNRDNLKKMMMLLRDKSPNIQYEAFHVFKV 268
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BLAST of mRNA_H-elongata_contig131321.2260.1 vs. uniprot
Match: UPI000B4E86C3 (calcium-binding protein 39-like isoform X1 n=3 Tax=Eutheria TaxID=9347 RepID=UPI000B4E86C3)

HSP 1 Score: 111 bits (277), Expect = 5.540e-29
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    1 QFLSQKFETVFEKYDILLKSSNYVTRRQSLKLLGELLLDRANFQVMMRYIQASASNKENLKMMMNLLRDKSHNIQYEAFHVFKV 252
            +FL Q ++T+FE Y+ LL+S NYVT+RQSLKLLGEL+LDR NF +M +YI    S  ENLK+MMNLLRDKS NIQ+EAFHVFKV
Sbjct:   56 EFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYI----SKPENLKLMMNLLRDKSPNIQFEAFHVFKV 135
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BLAST of mRNA_H-elongata_contig131321.2260.1 vs. uniprot
Match: A0A5D6XJS2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJS2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 5.650e-29
Identity = 59/84 (70.24%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:    1 QFLSQKFETVFEKYDILLKSSNYVTRRQSLKLLGELLLDRANFQVMMRYIQASASNKENLKMMMNLLRDKSHNIQYEAFHVFKV 252
            QF +  F+ +F KY+ LL S NYVTRRQSLKLLGE+LLDRANF +MM+YI      KENLKMMMNLLRD S NIQ+EAFHVFKV
Sbjct:  106 QFYASHFDLIFAKYNTLLMSENYVTRRQSLKLLGEILLDRANFDIMMKYI----GEKENLKMMMNLLRDTSANIQFEAFHVFKV 185
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BLAST of mRNA_H-elongata_contig131321.2260.1 vs. uniprot
Match: G4YX18_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YX18_PHYSP)

HSP 1 Score: 111 bits (277), Expect = 7.330e-29
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:    4 FLSQKFETVFEKYDILLKSSNYVTRRQSLKLLGELLLDRANFQVMMRYIQASASNKENLKMMMNLLRDKSHNIQYEAFHVFKV 252
            F +  F+ VF KY+ LL S NYVTRRQSLKLLGE+LLDR+NF +MM+YI      KENLKMMMNLLRD S NIQ+EAFHVFKV
Sbjct:   58 FFTSNFDVVFAKYNCLLMSENYVTRRQSLKLLGEILLDRSNFDIMMKYI----GEKENLKMMMNLLRDTSANIQFEAFHVFKV 136
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BLAST of mRNA_H-elongata_contig131321.2260.1 vs. uniprot
Match: UPI001BB165F8 (calcium-binding protein 39-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB165F8)

HSP 1 Score: 114 bits (285), Expect = 8.430e-29
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    1 QFLSQKFETVFEKYDILLKSSNYVTRRQSLKLLGELLLDRANFQVMMRYIQASASNKENLKMMMNLLRDKSHNIQYEAFHVFKV 252
            +FL + ++TVF+KY +LL S NYVT+RQSLKLLGELLLDR NF  M RYI    SN ENLK+MMN+LRDKS NIQ+EAFHVFKV
Sbjct:  200 EFLEKNYDTVFDKYKVLLNSDNYVTKRQSLKLLGELLLDRHNFTSMTRYI----SNPENLKLMMNMLRDKSRNIQFEAFHVFKV 279
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BLAST of mRNA_H-elongata_contig131321.2260.1 vs. uniprot
Match: A0A1X7VM74_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VM74_AMPQE)

HSP 1 Score: 114 bits (284), Expect = 1.330e-28
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 QFLSQKFETVFEKYDILLKSSNYVTRRQSLKLLGELLLDRANFQVMMRYIQASASNKENLKMMMNLLRDKSHNIQYEAFHVFKV 252
            QFL   ++ VF+KY +LL S NYVTRRQSLKLLGELLLDR N+ VM RYI    SN ENLKM+MN+LRDKS NIQ+EAFHVFKV
Sbjct:  199 QFLEGSYDKVFDKYHVLLNSENYVTRRQSLKLLGELLLDRHNYTVMTRYI----SNPENLKMIMNMLRDKSRNIQFEAFHVFKV 278
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BLAST of mRNA_H-elongata_contig131321.2260.1 vs. uniprot
Match: UPI00093D4E80 (calcium-binding protein 39-like n=3 Tax=Phasianidae TaxID=9005 RepID=UPI00093D4E80)

HSP 1 Score: 108 bits (271), Expect = 1.530e-28
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:    4 FLSQKFETVFEKYDILLKSSNYVTRRQSLKLLGELLLDRANFQVMMRYIQASASNKENLKMMMNLLRDKSHNIQYEAFHVFKV 252
            F+ Q ++T+FE Y+ LL S NYVT+RQSLKLLGEL+LDR NF +M +YI    S  ENLK+MMNLLRDKS NIQ+EAFHVFKV
Sbjct:   74 FMEQNYDTIFEDYEKLLHSENYVTKRQSLKLLGELILDRHNFAIMTKYI----SKPENLKLMMNLLRDKSPNIQFEAFHVFKV 152
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BLAST of mRNA_H-elongata_contig131321.2260.1 vs. uniprot
Match: A0A067CHG8_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHG8_SAPPC)

HSP 1 Score: 113 bits (283), Expect = 1.800e-28
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:    1 QFLSQKFETVFEKYDILLKSSNYVTRRQSLKLLGELLLDRANFQVMMRYIQASASNKENLKMMMNLLRDKSHNIQYEAFHVFKV 252
            QF    F+ VFEKY+ LL S NYVTRRQSLKLLGE+LLDR+NF VMMRYI      +ENLKMMMNLLRD S NIQ+EAFHVFKV
Sbjct:  197 QFFESHFDMVFEKYNKLLSSENYVTRRQSLKLLGEILLDRSNFDVMMRYI----CKRENLKMMMNLLRDTSVNIQFEAFHVFKV 276
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BLAST of mRNA_H-elongata_contig131321.2260.1 vs. uniprot
Match: A0A0P1AEE7_PLAHL (Conserved protein Mo25 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEE7_PLAHL)

HSP 1 Score: 114 bits (286), Expect = 1.810e-28
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    4 FLSQKFETVFEKYDILLKSSNYVTRRQSLKLLGELLLDRANFQVMMRYIQASASNKENLKMMMNLLRDKSHNIQYEAFHVFKV 252
            FL+ KF+ VF KY+ LL S NYVTRRQSLKLLGE+LLDR+NF +MM+YI      KENLKMMMNLLRD S NIQ+EAFHVFKV
Sbjct:  264 FLTSKFDVVFTKYNCLLMSENYVTRRQSLKLLGEILLDRSNFDIMMKYI----GEKENLKMMMNLLRDTSANIQFEAFHVFKV 342
[Close]
BLAST of mRNA_H-elongata_contig131321.2260.1 vs. uniprot
Match: G1NQ57_MELGA (Uncharacterized protein n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=G1NQ57_MELGA)

HSP 1 Score: 108 bits (271), Expect = 2.020e-28
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:    4 FLSQKFETVFEKYDILLKSSNYVTRRQSLKLLGELLLDRANFQVMMRYIQASASNKENLKMMMNLLRDKSHNIQYEAFHVFKV 252
            F+ Q ++T+FE Y+ LL S NYVT+RQSLKLLGEL+LDR NF +M +YI    S  ENLK+MMNLLRDKS NIQ+EAFHVFKV
Sbjct:   57 FMEQNYDTIFEDYEKLLHSENYVTKRQSLKLLGELILDRHNFAIMTKYI----SKPENLKLMMNLLRDKSPNIQFEAFHVFKV 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131321.2260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CD73_9STRA2.050e-3076.19Mo25-like-domain-containing protein n=1 Tax=Tribon... [more]
UPI000B4E86C35.540e-2967.86calcium-binding protein 39-like isoform X1 n=3 Tax... [more]
A0A5D6XJS2_9STRA5.650e-2970.24Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
G4YX18_PHYSP7.330e-2969.88Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
UPI001BB165F88.430e-2970.24calcium-binding protein 39-like n=1 Tax=Lytechinus... [more]
A0A1X7VM74_AMPQE1.330e-2871.43Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI00093D4E801.530e-2867.47calcium-binding protein 39-like n=3 Tax=Phasianida... [more]
A0A067CHG8_SAPPC1.800e-2872.62Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A0P1AEE7_PLAHL1.810e-2872.29Conserved protein Mo25 n=1 Tax=Plasmopara halstedi... [more]
G1NQ57_MELGA2.020e-2867.47Uncharacterized protein n=1 Tax=Meleagris gallopav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131321contigH-elongata_contig131321:1405..1805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue4.4e-23
Seed eggNOG ortholog42099.EPrPV00000019622
Preferred nameCAB39L
KEGG koko:K08272
KEGG Pathwayko04150,ko04152,map04150,map04152
GOsGO:0000003,GO:0000131,GO:0000920,GO:0001700,GO:0001775,GO:0001932,GO:0001934,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004672,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005815,GO:0005816,GO:0005829,GO:0005856,GO:0005886,GO:0005933,GO:0005937,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006970,GO:0006971,GO:0007049,GO:0007050,GO:0007114,GO:0007117,GO:0007118,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007405,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0008360,GO:0009628,GO:0009790,GO:0009792,GO:0009889,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010799,GO:0010800,GO:0010959,GO:0012505,GO:0015630,GO:0016020,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017145,GO:0018105,GO:0018193,GO:0018209,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019954,GO:0022008,GO:0022402,GO:0022414,GO:0022603,GO:0022604,GO:0022898,GO:0023014,GO:0023052,GO:0030141,GO:0030154,GO:0030234,GO:0030295,GO:0030427,GO:0030436,GO:0030447,GO:0030448,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032147,GO:0032153,GO:0032268,GO:0032270,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032501,GO:0032502,GO:0032505,GO:0032878,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033554,GO:0033674,GO:0034613,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0034774,GO:0035556,GO:0035839,GO:0036211,GO:0036230,GO:0036445,GO:0040007,GO:0042119,GO:0042325,GO:0042327,GO:0042995,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043266,GO:0043267,GO:0043269,GO:0043271,GO:0043299,GO:0043312,GO:0043332,GO:0043412,GO:0043539,GO:0043549,GO:0043934,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044732,GO:0045055,GO:0045165,GO:0045321,GO:0045786,GO:0045859,GO:0045860,GO:0045937,GO:0046872,GO:0046903,GO:0048103,GO:0048315,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051286,GO:0051301,GO:0051338,GO:0051347,GO:0051641,GO:0051716,GO:0051726,GO:0055057,GO:0055059,GO:0060205,GO:0060255,GO:0060341,GO:0060583,GO:0061351,GO:0061695,GO:0061794,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071214,GO:0071470,GO:0071476,GO:0071574,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0071958,GO:0072089,GO:0072697,GO:0072741,GO:0080090,GO:0097708,GO:0098722,GO:0098772,GO:0099503,GO:0101002,GO:0104004,GO:0120025,GO:0120038,GO:0140096,GO:1901016,GO:1901017,GO:1901379,GO:1901380,GO:1901564,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1904062,GO:1904063,GO:1904813,GO:1990234,GO:1990778,GO:2000099,GO:2000100,GO:2000112,GO:2000769,GO:2001141
EggNOG free text desc.calcium-binding protein. Source PGD
EggNOG OGs1MCYX@121069,KOG1566@1,KOG1566@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929779.856301-CDS-H-elongata_contig131321:1404..15691622929779.856301-CDS-H-elongata_contig131321:1404..1569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131321 1405..1569 +
1691679154.6691625-CDS-H-elongata_contig131321:1404..15691691679154.6691625-CDS-H-elongata_contig131321:1404..1569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131321 1405..1569 +
1622929779.8678463-CDS-H-elongata_contig131321:1718..18051622929779.8678463-CDS-H-elongata_contig131321:1718..1805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131321 1719..1805 +
1691679154.682627-CDS-H-elongata_contig131321:1718..18051691679154.682627-CDS-H-elongata_contig131321:1718..1805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131321 1719..1805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131321.2260.1prot_H-elongata_contig131321.2260.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131321 1405..1805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131321.2260.1

>prot_H-elongata_contig131321.2260.1 ID=prot_H-elongata_contig131321.2260.1|Name=mRNA_H-elongata_contig131321.2260.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
QFLSQKFETVFEKYDILLKSSNYVTRRQSLKLLGELLLDRANFQVMMRYI
QASASNKENLKMMMNLLRDKSHNIQYEAFHVFKV
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mRNA from alignment at H-elongata_contig131321:1405..1805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131321.2260.1 ID=mRNA_H-elongata_contig131321.2260.1|Name=mRNA_H-elongata_contig131321.2260.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=401bp|location=Sequence derived from alignment at H-elongata_contig131321:1405..1805+ (Himanthalia elongata Himel1 dioecious)
CAGTTCCTCTCTCAAAAGTTCGAGACAGTTTTCGAGAAGTACGACATCCT
GCTGAAGTCTTCGAACTACGTGACTCGGCGCCAGTCCCTAAAGCTCCTCG
GCGAACTGCTCCTCGACCGCGCCAACTTTCAAGTCATGATGCGCTACATC
CAGGCAAGTGCATCAGTGTTTGACGTGGATAAAAATTAAGCTTCGTGAAG
GATGATTTCAGACAAAATAGTCTGTAAACGGTTTATTTAATATCACACTT
AAGTGTCTCGTGCGCTTCCCACGTCTTGCCCATACTCTTCCCTTCCTTTC
CTGCATGCCTCCAGAACAAAGAAAACCTTAAGATGATGATGAATCTGCTA
AGAGACAAGAGCCACAACATCCAGTACGAAGCCTTCCACGTCTTCAAGGT
G
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Coding sequence (CDS) from alignment at H-elongata_contig131321:1405..1805+

>mRNA_H-elongata_contig131321.2260.1 ID=mRNA_H-elongata_contig131321.2260.1|Name=mRNA_H-elongata_contig131321.2260.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig131321:1405..1805+ (Himanthalia elongata Himel1 dioecious)
CAGTTCCTCTCTCAAAAGTTCGAGACAGTTTTCGAGAAGTACGACATCCT
GCTGAAGTCTTCGAACTACGTGACTCGGCGCCAGTCCCTAAAGCTCCTCG
GCGAACTGCTCCTCGACCGCGCCAACTTTCAAGTCATGATGCGCTACATC
CAGGCAAGTGCATCACAGTTCCTCTCTCAAAAGTTCGAGACAGTTTTCGA
GAAGTACGACATCCTGCTGAAGTCTTCGAACTACGTGACTCGGCGCCAGT
CCCTAAAGCTCCTCGGCGAACTGCTCCTCGACCGCGCCAACTTTCAAGTC
ATGATGCGCTACATCCAGGCAAGTGCATCAAACAAAGAAAACCTTAAGAT
GATGATGAATCTGCTAAGAGACAAGAGCCACAACATCCAGTACGAAGCCT
TCCACGTCTTCAAGGTGAACAAAGAAAACCTTAAGATGATGATGAATCTG
CTAAGAGACAAGAGCCACAACATCCAGTACGAAGCCTTCCACGTCTTCAA
GGTG
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