mRNA_H-elongata_contig13121.2255.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig13121.2255.1
Unique Name	mRNA_H-elongata_contig13121.2255.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig13121.2255.1 vs. uniprot
Match: D8LNW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW4_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.010e-46
Identity = 111/267 (41.57%), Postives = 142/267 (53.18%), Query Frame = 1

Query:   49 GVYGLNREIVEREAAEAPFRRFRLVAYGALSLAAVVLGGVSLGGLAGVEELSELSRNLPNPLLDSAVLGLAFYLWVEEVKTKRSALRLMEKRVEEESRVPNRASRRLDKKGARKKQQQPKGGIRAHKTATAPAVTPREKLRMSSAGEDESNSDVSPGSQMLPALASDADDVDPGAGDGIFGGILKTLDTVNQQSYYQALALNKDLEDKGVLPRLERKPGLPG---------------EGAANATDSESRRNPAELLADVEDSSRGGG 804
            G+YG  REI+E+E A APFRR RL+ Y   +  A+ L G+SLGG+AG++E  E+S NLPNPL+D+ V+G AFYLWVEEVKTKRS+L L++K  EE+S+VPNR+                                                           A  +   +V P  G G+F G+ +TL+ VN+QSYYQALALNK+LEDKGVLP LER PG PG               E AA AT  +         ADV  +S+GGG
Sbjct:   31 GIYGFAREIIEKEEASAPFRRLRLIGYAVPAFIAIFLAGISLGGMAGIDEFKEVSENLPNPLIDAGVVGAAFYLWVEEVKTKRSSLALLKKEYEEKSKVPNRSXXXXX------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGATEQEVGPAPGRGMFAGVKETLEAVNKQSYYQALALNKELEDKGVLPPLERTPGPPGGEEEVAIAEERSEAPESAAGATAVQGEAETVASPADV--ASQGGG 271

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig13121.2255.1 vs. uniprot

BLAST of mRNA_H-elongata_contig13121.2255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LNW4_ECTSI	1.010e-46	41.57	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig13121	contig	H-elongata_contig13121:2025..4903 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-08_005580.1
Exons	2
Model size	2376
Cds size	495
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig13121.2255.1	prot_H-elongata_contig13121.2255.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig13121 2840..3334 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929779.4713027-UTR-H-elongata_contig13121:2024..2306	1622929779.4713027-UTR-H-elongata_contig13121:2024..2306	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig13121 2025..2306 +
1691679154.499315-UTR-H-elongata_contig13121:2024..2306	1691679154.499315-UTR-H-elongata_contig13121:2024..2306	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig13121 2025..2306 +
1622929779.4875317-UTR-H-elongata_contig13121:2809..2839	1622929779.4875317-UTR-H-elongata_contig13121:2809..2839	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig13121 2810..2839 +
1691679154.516277-UTR-H-elongata_contig13121:2809..2839	1691679154.516277-UTR-H-elongata_contig13121:2809..2839	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig13121 2810..2839 +
1622929779.5230317-UTR-H-elongata_contig13121:3334..4903	1622929779.5230317-UTR-H-elongata_contig13121:3334..4903	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig13121 3335..4903 +
1691679154.5368967-UTR-H-elongata_contig13121:3334..4903	1691679154.5368967-UTR-H-elongata_contig13121:3334..4903	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig13121 3335..4903 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929779.5117977-CDS-H-elongata_contig13121:2839..3334	1622929779.5117977-CDS-H-elongata_contig13121:2839..3334	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig13121 2840..3334 +
1691679154.5272086-CDS-H-elongata_contig13121:2839..3334	1691679154.5272086-CDS-H-elongata_contig13121:2839..3334	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig13121 2840..3334 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig13121:2025..4903+
coding sequence from alignment at H-elongata_contig13121:2025..4903+

protein sequence of mRNA_H-elongata_contig13121.2255.1

>prot_H-elongata_contig13121.2255.1 ID=prot_H-elongata_contig13121.2255.1|Name=mRNA_H-elongata_contig13121.2255.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
MEKRVEEESRVPNRASRRLDKKGARKKQQQPKGGIRAHKTATAPAVTPRE
KLRMSSAGEDESNSDVSPGSQMLPALASDADDVDPGAGDGIFGGILKTLD
TVNQQSYYQALALNKDLEDKGVLPRLERKPGLPGEGAANATDSESRRNPA
ELLADVEDSSRGGG*

mRNA from alignment at H-elongata_contig13121:2025..4903+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig13121.2255.1 ID=mRNA_H-elongata_contig13121.2255.1|Name=mRNA_H-elongata_contig13121.2255.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2879bp|location=Sequence derived from alignment at H-elongata_contig13121:2025..4903+ (Himanthalia elongata Himel1 dioecious)
CAGGAAATATCCGATCGAGAGGCCGACGACGTCTCCAGCAAAGGTAAGGG
CGTCTACGGTCTGAATCGCGAGATCGTGGAGCGTGAGGCCGCGGAGGCTC
CGTTCCGAAGGTTTCGACTCGTCGCCTACGGCGCGCTATCACTCGCGGCG
GTAGTTCTGGGAGGCGTTTCCCTCGGCGGGTTGGCCGGCGTCGAAGAATT
GAGCGAGTTGAGCCGGAATCTGCCAAATCCCCTTCTCGATTCTGCCGTGT
TGGGTCTCGCTTTTTATCTGTGGGTCGAAGAGGTGGGAAGCCCCAGAGTT
GTCGTTTGACGGGGAAATTGCTGGATATATCCCATGAGCGCTGGCGACGC
GAGTGGATTGATTCTAGTCGCTTCGATCGAGCACCGTTTGTCCCAAGATG
AATGTGGTTCTCATCGATGTGATCGATATCAGCTGTCCTTGACTAAAGTA
GTACCCAACGATGCAATCCCAAGAATCAATCGAGTAGTATTAATAGTAAC
AGTAGCTGTAGGAGAGAGGTCATAGTATCAGTTGTAGTGTTAGTAGTAGT
ATTATTCGAGTAACAGAAGAACCAGTAGTAGTACTAGTAGCGGAAGGACG
ACATTTTGGTTTTCGCTTGATGAATCTGCTCTGTCCGTAACACGTATTTG
ACTGCCGCTGTTGGCTCATCGATCTGATCACAAATTCTCTCTCTGTCATA
GTATCTCTCTTTCTCTCTCCGTTCCCTATTTTGCGTTTCGATTGACCATT
TTTTCCGCCCTCTTCCCTCCCATTGCTCGCGCAAGGTTAAAACGAAGCGA
TCGGCATTGCGACTGATGGAAAAAAGGGTTGAGGAAGAATCGCGAGTTCC
AAATCGCGCATCGAGAAGGCTCGATAAAAAAGGCGCCCGGAAGAAACAGC
AACAACCGAAAGGAGGCATTCGGGCTCATAAGACGGCGACTGCGCCGGCC
GTGACGCCCCGCGAAAAACTTCGGATGAGTTCCGCAGGAGAAGACGAGTC
CAACAGTGACGTCAGTCCCGGGTCGCAAATGCTGCCGGCGTTGGCAAGCG
ATGCCGACGATGTCGATCCCGGAGCAGGAGATGGTATCTTTGGGGGTATA
CTTAAGACCCTCGATACCGTTAACCAACAGAGCTACTATCAGGCTCTCGC
GCTCAACAAAGACCTCGAGGACAAGGGAGTCCTGCCGCGCCTGGAACGCA
AGCCAGGGCTACCTGGAGAGGGAGCGGCCAATGCTACTGACTCTGAATCC
AGACGGAATCCTGCCGAGTTACTTGCGGATGTCGAAGATTCGTCTAGAGG
AGGGGGCTGACGTTTTGAGGGTCTTGGAGAACTCCTCCGAGGAAGGGCGA
GAAACCTGTCCCAGGTGCGGTTGAAAGCATCCTACGGGAGGACGGCAAGG
GCGTAGAAAAAGGATGAGGACGACAAGGATGAGGGCAAGCACCGGAAGAG
ATAAACCCAAGACCTCTTTCGTTCGTCTTGTTGTGTCTGGGGGTTATCCG
GCGGGACGGTGCCGGCGTTGGCTGCTTCCCCCGCTCCCCGCGTGCCTCGG
TGTGGCTTAAAGAAGTACCGTGAGCGGAAGCAAGAAAAACAAATGTGCGG
TTTCTCACTCGAGTAGAAGAAAGATAAATAATGACGAGGATCATCGGAAA
ATCGATAAGAAGATCCTCGGCCTTGCCCAAGGTTTAAATTAAAAACTTGC
CAATAATTTCACGAAGTTCAAGGCAAGCTGGGGATAGAGCGGACCGAGCA
AGGAATACGCAGCTGTGGAGAAAGGGGAGAGGTTGGTTAGGCGGAGCAGG
GCGGGGGGAGGCATGACAGCCCTAGAGGACAGAGGAAGCACACGCGCGCG
GGGCGGAGGGGTATAAATTCGTCAGGGATAGGTACGAGGAACACAAGGGA
GAGGGGGGTGTCCACTAGTCTATGACTTCTTAGGCGGGAAAAGCAAAGGG
AGTGACTACGGCGAAATGGACGAGCGCCTCTGCGCCGCGGAGGACAGGTG
CTTGGGAAAACAGGCAACATGCATGAGCAGTAGCCAGGACATTCGCGAGC
GAAAACAGCCGGGATGCTGCAAGCGGACCACCCAAGTCTTGAGGGCTCAG
AAAATGAAGCGACCGTACCGTACGGGTTGCGCAAGATCAGCGTTTGGGAA
TCTGTGGCAATGGCGGATAACCGATACTTGCACACTATTATAGTAGGGCT
CTAAGCCTGACGAGCCCGTAAAATCTTGGGGGCGTTTATTTCATCCAAAC
AATACAATTTATAGGTAGACATCAAGGTTGTAACCGTAGCCCCTGTCCCC
CTCAGCCATTCTCGTCCCATGACGAGGGGGTTATTATTTTGTTGACACAC
CAACGTTAACCTTGTCATACACAGGATCGTAAAACGATGCATTTAGGCCA
TAAAAAATATGCTTTACTTTCAGTATAGTAATTAAAAAAAAATGAATTTC
GTTCACATAATCTCGACCTTGATTCCTTTCCATTAGATTTTTTTTCCGAA
AAAATCGTCTCCTCCGTAAGAAACGTCATGATTGTCAAACACCTCAAGGG
TGTTTTTACTCCTTTCCCCGTGACGCCCTTCCAAGGGTAAAAAATACTGT
ATTACATTTTGTTTTCTTAGGTGATACTAAAGTTGGTAGATTTGAAGGGT
CTGTAGGGACACGGATAATAAATTGCGGCGATCCAAATTGGTGCTGGACT
TCCGAGTGATGATATGTGTATCTCACGCTTTAAATCCCGGGCGGCATACT
GGTTGATTGATGATTAATGATTGTGGTCGATGACCCTCTAACGGCCTGTC
TATGGATATATGTTCGTTTTCGTTTTATTTCTTCCCTTTAGTTAACAATA
ATCTAAAAATGTTGTATAATCCCCCCTAG

Coding sequence (CDS) from alignment at H-elongata_contig13121:2025..4903+

>mRNA_H-elongata_contig13121.2255.1 ID=mRNA_H-elongata_contig13121.2255.1|Name=mRNA_H-elongata_contig13121.2255.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig13121:2025..4903+ (Himanthalia elongata Himel1 dioecious)
ATGGAAAAAAGGGTTGAGGAAGAATCGCGAGTTCCAAATCGCGCATCGAG
AAGGCTCGATAAAAAAGGCGCCCGGAAGAAACAGCAACAACCGAAAGGAG
GCATTCGGGCTCATAAGACGGCGACTGCGCCGGCCGTGACGCCCCGCGAA
AAACTTCGGATGAGTTCCGCAGGAGAAGACGAGTCCAACAGTGACGTCAG
TCCCGGGTCGCAAATGCTGCCGGCGTTGGCAAGCGATGCCGACGATGTCG
ATCCCGGAGCAGGAGATGGTATCTTTGGGGGTATACTTAAGACCCTCGAT
ACCGTTAACCAACAGAGCTACTATCAGGCTCTCGCGCTCAACAAAGACCT
CGAGGACAAGGGAGTCCTGCCGCGCCTGGAACGCAAGCCAGGGCTACCTG
GAGAGGGAGCGGCCAATGCTACTGACTCTGAATCCAGACGGAATCCTGCC
GAGTTACTTGCGGATGTCGAAGATTCGTCTAGAGGAGGGGGCTGAATGGA
AAAAAGGGTTGAGGAAGAATCGCGAGTTCCAAATCGCGCATCGAGAAGGC
TCGATAAAAAAGGCGCCCGGAAGAAACAGCAACAACCGAAAGGAGGCATT
CGGGCTCATAAGACGGCGACTGCGCCGGCCGTGACGCCCCGCGAAAAACT
TCGGATGAGTTCCGCAGGAGAAGACGAGTCCAACAGTGACGTCAGTCCCG
GGTCGCAAATGCTGCCGGCGTTGGCAAGCGATGCCGACGATGTCGATCCC
GGAGCAGGAGATGGTATCTTTGGGGGTATACTTAAGACCCTCGATACCGT
TAACCAACAGAGCTACTATCAGGCTCTCGCGCTCAACAAAGACCTCGAGG
ACAAGGGAGTCCTGCCGCGCCTGGAACGCAAGCCAGGGCTACCTGGAGAG
GGAGCGGCCAATGCTACTGACTCTGAATCCAGACGGAATCCTGCCGAGTT
ACTTGCGGATGTCGAAGATTCGTCTAGAGGAGGGGGCTGA